Querying Biomedical Ontologies in Natural Language using Answer Set Programming. Erdogan, H., Oztok, U., Erdem, Y., & Erdem, E. In Proc. of the Third International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS'10), 2010. N abstract bibtex We present a formal framework to find answers and explanations to complex queries over biomedical ontologies and databases, using the high-level representation and efficient automated reasoners of Answer Set Programming. Over this framework, we develop an intelligent user-interface that allows users to enter biomedical queries in a natural language, and that presents the answers also in that natural language. We show the applicability of our approach with some queries over PharmGKB, DrugBank, CTD and Sider.
@inproceedings{ swat4ls10,
author = {Halit Erdogan and Umut Oztok and Yelda Erdem and Esra Erdem},
booktitle = {Proc. of the Third International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS'10)},
urln = {swat4ls10.pdf},
year = {2010},
title = {Querying Biomedical Ontologies in Natural Language using Answer Set Programming},
abstract = {We present a formal framework to find answers and explanations to complex queries over biomedical ontologies and databases, using the
high-level representation and efficient automated reasoners of Answer Set Programming. Over this framework, we develop an intelligent user-interface
that allows users to enter biomedical queries in a natural language, and that presents the answers also in that natural language. We show the
applicability of our approach with some queries over PharmGKB, DrugBank, CTD and Sider.}
}
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