Taverna: a tool for the composition and enactment of bioinformatics workflow. Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, R, M., Wipat, A., & Li, P. Bioinformatics (Oxford, England), 20(17):3045--54, 2004. Paper doi abstract bibtex MOTIVATION: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these resources are being made available with programmatic access in the form of Web services. Bioinformatics scientists will need to orchestrate these Web services in workflow as part of their analyses. RESULTS: The Taverna project has developed a tool for the composition and enactment of bioinformatics workflow for the life sciences community. The tool includes a workbench application which provides a graphical user interface for the composition of workflow. These workflow are written in a new language called the simple conceptual unified flow language (Scufl), where by each step within a workflow represents one atomic task. Two examples are used to illustrate the ease by which in silico experiments can be represented as Scufl workflow using the workbench application.
@article{ Oinn2004,
author = {Oinn, Tom and Addis, Matthew and Ferris, Justin and Marvin, Darren
and Senger, Martin and Greenwood, Mark and Carver, Tim and Glover,
Kevin and Pocock, Matthew R and Wipat, Anil and Li, Peter},
title = {{Taverna: a tool for the composition and enactment of bioinformatics
workflow.}},
journal = {Bioinformatics (Oxford, England)},
year = {2004},
volume = {20},
pages = {3045--54},
number = {17},
abstract = {MOTIVATION: In silico experiments in bioinformatics involve the co-ordinated
use of computational tools and information repositories. A growing
number of these resources are being made available with programmatic
access in the form of Web services. Bioinformatics scientists will
need to orchestrate these Web services in workflow as part of their
analyses. RESULTS: The Taverna project has developed a tool for the
composition and enactment of bioinformatics workflow for the life
sciences community. The tool includes a workbench application which
provides a graphical user interface for the composition of workflow.
These workflow are written in a new language called the simple conceptual
unified flow language (Scufl), where by each step within a workflow
represents one atomic task. Two examples are used to illustrate the
ease by which in silico experiments can be represented as Scufl workflow
using the workbench application.},
doi = {10.1093/bioinformatics/bth361},
file = {:C$\backslash$:/Users/Dani/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Oinn et al. - 2004 - Taverna a tool for the composition and enactment of bioinformatics workflow‥pdf:pdf},
issn = {1367-4803},
keywords = {#Taverna,#disease_outbreak,#management,#workflow-provenance,Computational
Biology,Computer Communication Networks,Computer
Graphics,Database Management Systems,Information Storage and Retrieval,Information
Storage and Retrieval: methods,Internet,Online Systems,Software,Software
Design,User-Computer Interface},
mendeley-tags = {#Taverna,#disease_outbreak,#management,#workflow-provenance},
pmid = {15201187},
url = {http://www.ncbi.nlm.nih.gov/pubmed/15201187}
}
Downloads: 0
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