Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana. Slane, D., Kong, J., Schmid, M., Jürgens, G., & Bayer, M. Genomics Data, 4:96–98, June, 2015. doi abstract bibtex In Arabidopsis, various cell type-specific whole-genome expression analyses have been conducted. However, the vast majority of these were performed with cellular RNA from root tissues or other easily accessible cell types [1]. Nuclear RNA was neglected for a long time as not being representative for transcriptomic studies. In recent years, however, there have been reports describing the validity of nuclear RNA for these types of studies [2,3]. Here we describe the generation, quality assessment and analysis of nuclear transcriptomic data from Arabidopsis embryos published by Slane et al. (2014) [4]. Comparison of nuclear with cellular gene expression demonstrated the usefulness of nuclear transcriptomics.
@article{slane_profiling_2015,
title = {Profiling of embryonic nuclear vs. cellular {RNA} in {Arabidopsis} thaliana},
volume = {4},
issn = {2213-5960},
doi = {10.1016/j.gdata.2015.03.015},
abstract = {In Arabidopsis, various cell type-specific whole-genome expression analyses have been conducted. However, the vast majority of these were performed with cellular RNA from root tissues or other easily accessible cell types [1]. Nuclear RNA was neglected for a long time as not being representative for transcriptomic studies. In recent years, however, there have been reports describing the validity of nuclear RNA for these types of studies [2,3]. Here we describe the generation, quality assessment and analysis of nuclear transcriptomic data from Arabidopsis embryos published by Slane et al. (2014) [4]. Comparison of nuclear with cellular gene expression demonstrated the usefulness of nuclear transcriptomics.},
language = {eng},
journal = {Genomics Data},
author = {Slane, Daniel and Kong, Jixiang and Schmid, Markus and Jürgens, Gerd and Bayer, Martin},
month = jun,
year = {2015},
pmid = {26484189},
pmcid = {PMC4536148},
keywords = {Arabidopsis thaliana, Gene expression, Microarray, Nuclear and cellular transcriptome, Pro-embryo and suspensor transcriptome},
pages = {96--98},
}
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