2018 (1)
Rice Galaxy: an open resource for plant science. Juanillas, V., M., J.; Dereeper, A.; Beaume, N.; Droc, G.; Dizon, J.; Mendoza, J., R.; Perdon, J., P.; Mansueto, L.; Triplett, L.; and Lang, J. bioRxiv,358754. 2018.
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  2017 (16)
Provenance Enriched PID Kernel Information as OAI-ORE Map Replacement for SEAD Research Objects. Kouper, I.; Luo, Y.; Suriarachchi, I.; and Plale, B. In Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2017.
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Low Latency Stream Processing: Twitter Heron with Infiniband and Omni-Path. Kamburugamuve, S.; Ramasamy, K.; Swany, M.; and Fox, G. In Proceedings of Strata Data Conference, 2017.
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Identification and characterization of information-networks in long-tail data collections. Elag, M.; Kumar, P.; Marini, L.; Myers, J.; Hedstrom, M.; and Plale, B. Environmental Modelling and Software, 94. 2017.
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Towards Publishing Secure Capsule-Based Analysis. Murdock, J.; Jett, J.; Cole, T.; Ma, Y.; Downie, J.; and Plale, B. In Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2017.
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A hybrid approach to population construction for agricultural agent-based simulation. Chen, P.; Evans, T.; Frisby, M.; Izquierdo, E.; and Plale, B. In Proceedings of the 2016 IEEE 12th International Conference on e-Science, e-Science 2016, 2017.
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Crossing analytics systems: A case for integrated provenance in data lakes. Suriarachchi, I.; and Plale, B. In Proceedings of the 2016 IEEE 12th International Conference on e-Science, e-Science 2016, 2017.
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The Centrality of Data: Data Lifecycle and Data Pipelines. Plale, B.; and Kouper, I. pages 91-111. Elsevier, 2017.
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Indiana University Pervasive Technology Institute. Stewart, C., A.; Welch, V.; Plale, B.; Fox, G.; Pierce, M.; and Sterling, T. Technical Report 2017.
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Enhancing access to digital media: The language application grid in the HTRC Data Capsule. Pustejovsky, J.; Verhagen, M.; Rim, K.; Ma, Y.; Ran, L.; Liyanage, S.; Murdock, J.; McDonald, R.; and Plale, B. In ACM International Conference Proceeding Series, volume Part F1287, 2017.
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Pervasive Technology Institute Annual Report: Research Innovations and Advanced Cyberinfrastructure Services in Support of IU Strategic Goals During FY 2017. Stewart, C.; Plale, B.; Welch, V.; Pierce, M.; Fox, G., C.; Doak, T., G.; Hancock, D., Y.; Henschel, R.; Link, M., R.; and Miller, T. Technical Report 2017.
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Offloading Collective Operations to Programmable Logic. Arap, O.; Brasilino, L.; Kissel, E.; Shroyer, A.; and Swany, M. IEEE Micro, 37(5). 2017.
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Low latency stream processing: Apache Heron with Infiniband & Intel Omni-Path. Kamburugamuve, S.; Ramasamy, K.; Swany, M.; and rey Fox, G. In UCC, 2017.
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OSiRIS: a distributed Ceph deployment using software defined networking for multi-institutional research. McKee, S.; Kissel, E.; Meekhof, B.; Swany, M.; Miller, C.; and Gregorowicz, M. In Journal of Physics: Conference Series, volume 898, pages 62045, 2017. IOP Publishing
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Pacific Rim Applications and Grid Middleware Assembly (PRAGMA): International clouds for data science. Plale, B.; and Chen, M. Concurrency Computation, 29(13). 2017.
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Mining lake time series using symbolic representation. Ruan, G.; Hanson, P., C.; Dugan, H.; and Plale, B., A. Ecological Informatics, 39. 2017.
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Data Capsule Appliance for Research Analysis of Restricted and Sensitive Data in Academic Libraries. McDonald, R., H.; Mitchell, E.; Unsworth, J.; and Kouper, I. In Coalition of Networked Information Fall Meeting CNI-2017, 2017.
Data Capsule Appliance for Research Analysis of Restricted and Sensitive Data in Academic Libraries [link]Website   bibtex
  2016 (18)
Network-managed virtual global address space for message-driven runtimes. Kulkarni, A.; Dalessandro, L.; Kissel, E.; Lumsdaine, A.; Sterling, T.; and Swany, M. In HPDC 2016 - Proceedings of the 25th ACM International Symposium on High-Performance Parallel and Distributed Computing, 2016.
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A multi-tenant fair share approach to full-text search engine. Peng, Z.; and Plale, B. In Proceedings of the 7th International Workshop on Data-Intensive Computing in the Cloud, pages 45-50, 2016. IEEE Press
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Rapid Monitoring of Drought Impacts on Small-Scale Farms in Africa through Integration of Farmer SMS data and Environmental Sensors. Evans, T., P.; Caylor, K., K.; Estes, L., D.; Plale, B., A.; Attari, S.; and Waldman, K. In AGU Fall Meeting Abstracts, 2016.
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Provenance as essential infrastructure for Data Lakes. Suriarachchi, I.; and Plale, B. Volume 9672 2016.
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Offloading collective operations to programmable logic on a Zynq cluster. Arap, O.; and Swany, M. In Proceedings - 2016 IEEE 24th Annual Symposium on High-Performance Interconnects, HOTI 2016, 2016.
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KVLight: A Lightweight Key-Value Store for Distributed Access in Cloud. Zeng, J.; and Plale, B. In Proceedings - 2016 16th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, CCGrid 2016, 2016.
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Bongo: A BGP speaker built for defending against bad routes. Benton, K.; Camp, L.; and Swany, M. In Proceedings - IEEE Military Communications Conference MILCOM, 2016.
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Horme: Random access big data analytics. Ruan, G.; and Plale, B. In Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2016.
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SamzaSQL: Scalable fast data management with streaming SQL. Pathirage, M.; Hyde, J.; Pan, Y.; and Plale, B. In Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016, 2016.
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Argus: A Multi-tenancy NoSQL store with workload-aware resource reservation. Zeng, J.; and Plale, B. Parallel Computing, 58. 2016.
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Photon: Remote memory access middleware for high-performance runtime systems. Kissel, E.; and Swany, M. In Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016, 2016.
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Filtering Source-Spoofed IP Traffic Using Feasible Path Reverse Path Forwarding with SDN. Benton, K.; Camp, L., J.; Kelley, T.; and Swany, M. International Journal of Computer and Communication Engineering, 5(6): 441. 2016.
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Big Data at Scale for Digital Humanities: An Architecture for the. Kowalczyk, S., T.; Sun, Y.; Peng, Z.; Plale, B.; Willis, C.; Zeng, J.; Pathirage, M.; Liyanage, S.; Todd, A.; and Ruan, G. Big Data: Concepts, Methodologies, Tools, and Applications: Concepts, Methodologies, Tools, and Applications,345. 2016.
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Analysis of memory constrained live provenance. Chen, P.; Evans, T.; and Plale, B. Volume 9672 2016.
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Evaluating Collectives in Networks of Multicore/Two-level Reduction. Wickramasinghe, U., S.; D’Alessandro, L.; Lumsdaine, A.; Kissel, E.; Swany, M.; and Newton, R. 2016.
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Provenance as Essential Infrastructure for Data Lakes [Preprint, forthcoming in IPAW 2016]. Suriarachchi, I.; and Plale, B. Technical Report 2016.
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Crossing analytics systems: A case for integrated provenance in data lakes. Suriarachchi, I.; and Plale, B. In e-Science (e-Science), 2016 IEEE 12th International Conference on, pages 349-354, 2016. IEEE
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  2015 (20)
The Data Capsule for Non-Consumptive Research. Plale, B.; Prakash, A.; and McDonald, R. Technical Report 2015.
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Software in Science: a Report of Outcomes of the 2014 National Science Foundation Software Infrastructure for Sustained Innovation (SI2) Meeting. Plale, B.; Jones, M.; and Thain, D. Technical Report 2015.
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Komadu: A capture and visualization system for scientific data provenance. Suriarachchi, I.; Zhou, Q.; and Plale, B. Journal of Open Research Software, 3(1). 2015.
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Parallel and quantitative sequential pattern mining for large-scale interval-based temporal data. Ruan, G.; Zhang, H.; and Plale, B. In Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014, 2015.
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Fast Data Management with Distributed Streaming SQL. Pathirage, M.; and Plale, B. arXiv preprint arXiv:1511.03935. 2015.
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Towards building a lightweight key-value store on parallel file system. Zeng, J.; and Plale, B. In Proceedings - IEEE International Conference on Cluster Computing, ICCC, volume 2015-Octob, 2015.
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Using phoebus data transfer accelerator in cloud environments. Zhang, M.; Kissel, E.; and Swany, M. In IEEE International Conference on Communications, volume 2015-Septe, 2015.
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New Approaches to Capture High Frequency Agricultural Dynamics in Africa through Mobile Phones. Evans, T., P.; Attari, S.; Plale, B., A.; Caylor, K., K.; Estes, L., D.; and Sheffield, J. In AGU Fall Meeting Abstracts, 2015.
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Big data provenance analysis and visualization. Chen, P.; and Plale, B. In Proceedings - 2015 IEEE/ACM 15th International Symposium on Cluster, Cloud, and Grid Computing, CCGrid 2015, 2015.
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ProvErr: System level statistical fault diagnosis using dependency model. Chen, P.; and Plale, B. In Proceedings - 2015 IEEE/ACM 15th International Symposium on Cluster, Cloud, and Grid Computing, CCGrid 2015, 2015.
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Trust threads: minimal provenance and data publication and reuse. Plale, B. In National Data Integrity Conference-2015, 2015. Colorado State University. Libraries
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HELM: Conflict-free active measurement scheduling for shared network resource management. Zhang, M.; Swany, M.; Yavanamanda, A.; and Kissel, E. In Proceedings of the 2015 IFIP/IEEE International Symposium on Integrated Network Management, IM 2015, 2015.
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Filtering IP source spoofing using feasible path reverse path forwarding with SDN. Benton, K.; Camp, L.; Kelley, T.; and Swany, M. In 2015 IEEE Conference on Communications and NetworkSecurity, CNS 2015, 2015.
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Adaptive Recursive Doubling Algorithm for Collective Communication. Arap, O.; Swany, M.; Brown, G.; and Himebaugh, B. In Proceedings - 2015 IEEE 29th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2015, 2015.
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Research challenges in future multi-domain network performance measurement and monitoring. Calyam, P.; and Swany, M. Computer Communication Review, 45(3). 2015.
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Provenance and Annotation of Data and Processes: 5th International Provenance and Annotation Workshop, IPAW 2014, Cologne, Germany, June 9-13, 2014. Revised Selected Papers. Ludäscher, B.; and Plale, B. Volume 8628 Springer, 2015.
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Regenerating and quantifying quality of benchmarking data using static and dynamic provenance. Ghoshal, D.; Chauhan, A.; and Plale, B. Volume 8628 2015.
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Workload-aware resource reservation for multi-tenant NoSQL. Zeng, J.; and Plale, B. In Proceedings - IEEE International Conference on Cluster Computing, ICCC, volume 2015-Octob, 2015.
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Towards sustainable curation and preservation: The SEAD project's data services approach. Myers, J.; Hedstrom, M.; Akmon, D.; Payette, S.; Plale, B.; Kouper, I.; McCaulay, S.; McDonald, R.; Suriarachchi, I.; Varadharaju, A.; Kumar, P.; Elag, M.; Lee, J.; Kooper, R.; and Marini, L. In Proceedings - 11th IEEE International Conference on eScience, eScience 2015, 2015.
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Preface. Ludäscher, B.; and Plale, B. Volume 8628 2015.
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  2014 (23)
Fast longest common subsequence with general integer scoring support on GPUs. Ozsoy, A.; Chauhan, A.; and Swany, M. In Proceedings of the 2014 International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2014, 2014.
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HPDC 2014 chairs' message. Plale, B.; Cappello, F.; Ripeanu, M.; and Xu, D. In HPDC 2014 - Proceedings of the 23rd International Symposium on High-Performance Parallel and Distributed Computing, 2014.
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Implementing mpi_barrier with the netfpga. Arap, O.; Brown, G.; Himebaugh, B.; and Swany, M. In Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA), pages 1, 2014. The Steering Committee of The World Congress in Computer Science, Computer Engineering and Applied Computing (WorldComp)
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Software Defined Multicasting for MPI Collective Operation Offloading with the NetFPGA BT - Euro-Par 2014 Parallel Processing: 20th International Conference, Porto, Portugal, August 25-29, 2014. Proceedings. Arap, O.; Brown, G.; Himebaugh, B.; and Swany, M. Volume 8632 LNCS . pages 632-643. Springer International Publishing, 2014.
Software Defined Multicasting for MPI Collective Operation Offloading with the NetFPGA BT  - Euro-Par 2014 Parallel Processing: 20th International Conference, Porto, Portugal, August 25-29, 2014. Proceedings [link]Website   bibtex   abstract
Characterization of Emergent Data Networks Among Long-Tail Data. Elag, M.; Kumar, P.; Hedstrom, M.; Myers, J.; Plale, B.; Marini, L.; and McDonald, R. In EGU General Assembly Conference Abstracts, volume 16, 2014.
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Parallel and quantitative sequential pattern mining for large-scale interval-based temporal data. Ruan, G.; Zhang, H.; and Plale, B. In Big Data (Big Data), 2014 IEEE International Conference on, pages 32-39, 2014. IEEE
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Regenerating and Quantifying Quality of Benchmarking Data Using Static and Dynamic Provenance. Ghoshal, D.; Chauhan, A.; and Plale, B. In International Provenance and Annotation Workshop, pages 56-67, 2014. Springer
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Hierarchical MapReduce: Towards simplified cross-domain data processing. Luo, Y.; Plale, B.; Guo, Z.; Li, W.; Qiu, J.; and Sun, Y. Concurrency Computation Practice and Experience, 26(4). 2014.
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Study in usefulness of middleware-only provenance. Zhou, Q.; Ghoshal, D.; and Plale, B. In Proceedings - 2014 IEEE 10th International Conference on eScience, eScience 2014, volume 1, 2014.
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Author gender metadata augmentation of hathitrust digital library. Peng, Z.; Chen, M.; Kowalczyk, S.; and Plale, B. Proceedings of the ASIST Annual Meeting, 51(1). 2014.
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Explicit semantic path mining via Wikipedia knowledge tree. Xia, T.; Chen, M.; and Liu, X. Proceedings of the ASIST Annual Meeting, 51(1). 2014.
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Cloud computing data capsules for non-consumptiveuse of texts. Zeng, J.; Ruan, G.; Crowell, A.; Prakash, A.; and Plale, B. In Proceedings of the 5th ACM workshop on Scientific cloud computing, pages 9-16, 2014. ACM
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Executing Storm Surge Ensembles on PAAS Cloud. Chakraborty, A.; Pathirage, M.; Suriarachchi, I.; Chandrasekar, K.; Mattocks, C.; and Plale, B. pages 257-276. Springer, 2014.
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Provenance quality assessment methodology and framework. Cheah, Y.; and Plale, B. Journal of Data and Information Quality, 5(3). 2014.
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Software Defined Multicasting for MPI Collective Operation Offloading with the NetFPGA. Arap, O.; Brown, G.; Himebaugh, B.; and Swany, M. 2014.
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Semantic annotation with RescoredESA: Rescoring concept features generated from explicit semantic analysis. Jiang, Z.; Chen, M.; and Liu, X. In ESAIR 2014 - Proceedings of the 7th International Workshop on Exploiting Semantic Annotations in Information Retrieval, co-located with CIKM 2014, 2014.
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Optimizing LZSS compression on GPGPUs. Ozsoy, A.; Swany, M.; and Chauhan, A. Future Generation Computer Systems, 30(1). 2014.
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Indiana University Digitization Master Plan. Lewis, D.; and Plale, B. Technical Report 2014.
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Offloading MPI Parallel Prefix Scan (MPI_Scan) with the NetFPGA. Arap, O.; and Swany, M. arXiv preprint arXiv:1408.4939. 2014.
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Data Management Strategies for Scientific Applications in Cloud Environments. Ghoshal, D.; Hendrix, V.; Feller, E.; Morin, C.; Plale, B.; and Ramakrishnan, L. Technical Report 2014.
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Synthesis of working group and interest group activity one year into the research data alliance. Plale, B. D-Lib Magazine, 20(1-2). 2014.
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Multi-tenant fair share in NoSQL data stores. Zeng, J.; and Plale, B. In 2014 IEEE International Conference on Cluster Computing, CLUSTER 2014, 2014.
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Temporal representation for mining scientific data provenance. Chen, P.; Plale, B.; and Aktas, M. Future Generation Computer Systems, 36. 2014.
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  2013 (28)
Modeling heterogeneous data resources for social-ecological research: A data-centric perspective. Chen, M.; Pavalanathan, U.; Jensen, S.; and Plale, B. In Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2013.
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The SEAD datanet prototype: Data preservation services for sustainability science. Plale, B.; McDonald, R.; Chandrasekar, K.; Kouper, I.; Light, R.; Konkiel, S.; Hedstrom, M.; Myers, J.; and Kumar, P. In Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2013.
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Efficient wide area data transfer protocols for 100 Gbps networks and beyond. Kissel, E.; Swany, M.; Tierney, B.; and Pouyoul, E. In Proc. of NDM 2013: 3rd Int. Workshop on Network-Aware Data Management - Held in Conjunction with SC 2013: The Int. Conference for High Performance Computing, Networking, Storage and Analysis, 2013.
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Exploiting mapreduce and data compression for data-intensive applications. Ruan, G.; Zhang, H.; and Plale, B. In ACM International Conference Proceeding Series, 2013.
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Provenance from log files: a BigData problem. Ghoshal, D.; and Plale, B. In Proceedings of the Joint EDBT/ICDT 2013 Workshops, pages 290-297, 2013. ACM
Provenance from log files: a BigData problem [link]Website   bibtex   abstract
DEM generation with SAR interferometry based on weighted wavelet phase unwrapping. Rahnemoonfar, M.; and Plale, B. In Proceedings - 2013 4th International Conference on Computing for Geospatial Research and Application, COM.Geo 2013, 2013.
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Provenance capture and use in a satellite data processing pipeline. Jensen, S.; Plale, B.; Aktas, M.; Luo, Y.; Chen, P.; and Conover, H. IEEE Transactions on Geoscience and Remote Sensing, 51(11). 2013.
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Message from the research track chairs. Plale, B.; Lyu, M.; and Zhang, J. In Proceedings - IEEE 20th International Conference on Web Services, ICWS 2013, 2013.
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perfSONAR: On-board diagnostics for big data. Zurawski, J.; Balasubramanian, S.; Brown, A.; Kissel, E.; Lake, A.; Swany, M.; Tierney, B.; and Zekauskas, M. In IEEE International Conference on Big Data, 2013.
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Static compiler analysis for workflow provenance. Ghoshal, D.; Chauhan, A.; and Plale, B. In Proceedings of WORKS 2013: 8th Workshop on Workflows in Support of Large-Scale Science - Held in conjunction with SC 2013: The International Conference for High Performance Computing, Networking, Storage and Analysis, 2013.
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SEAD virtual archive: Building a federation of institutional repositories for long-term data preservation in sustainability science. Plale, B.; McDonald, R., H.; Chandrasekar, K.; Kouper, I.; Konkiel, S.; Hedstrom, M., L.; Myers, J.; and Kumar, P. International Journal of Digital Curation, 8(2): 172-180. 2013.
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Unmanaged workflows: Their provenance and use. Aktas, M.; Plale, B.; Leake, D.; and Mukhi, N. Volume 426 2013.
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HathiTrust research center: computational access for digital humanities and beyond. Plale, B.; McDonald, R., H.; Sun, Y.; Kouper, I.; Cobine, R.; Downie, J., S.; Namachchivaya, B., B., S.; Unsworth, J.; Stephen Downie, J.; Namachchivaya, B., B., S.; and Unsworth, J. In Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2013. ACM
HathiTrust research center: computational access for digital humanities and beyond [link]Website   bibtex   abstract
Changing the Curation Equation: A Data Lifecycle Approach to Lowering Costs and Increasing Value. Myers, J.; Hedstrom, M.; Plale, B., A.; Kumar, P.; McDonald, R.; Kooper, R.; Marini, L.; Kouper, I.; and Chandrasekar, K. In AGU Fall Meeting Abstracts, 2013.
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Towards Tera-Scale Performance for Longest Common Subsequence Using Graphics Processor. Ozsoy, A.; Chauhan, A.; and Swany, M. IEEE Supercomputing (SC). 2013.
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Data Sets, Ensemble Cloud Computing, and the University Library. Plale, B., A. In AGU Fall Meeting Abstracts, 2013.
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