2017 (10)
Towards Automating Data Narratives. Gil, Y.; and Garijo, D. In Proceedings of the Twenty-Second ACM International Conference on Intelligent User Interfaces (IUI-17), 2017. ACM
Towards Automating Data Narratives [pdf]Paper   bibtex   abstract
Towards Continuous Scientific Data Analysis and Hypothesis Evolution. Gil, Y.; Garijo, D.; Ratnakar, V.; Mayani, R.; Adusumilli, R.; Boyce, H.; Srivastava, A.; and Mallick, P. In Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence (AAAI-17), 2017.
Towards Continuous Scientific Data Analysis and Hypothesis Evolution [pdf]Paper   bibtex   abstract
Abstract, Link, Publish, Exploit: An End to End Framework for Workflow Sharing. Garijo, D.; Gil, Y.; and Corcho, O. Future Generation Computer Systems, . 2017.
Abstract, Link, Publish, Exploit: An End to End Framework for Workflow Sharing [pdf]Paper   bibtex   abstract
Artificial Intelligence Buzzword Explained: Scientific workflows. Garijo, D. AI Matters, 3(1): 4-8. 2017.
Artificial Intelligence Buzzword Explained: Scientific workflows [pdf]Paper   bibtex   abstract
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. Gil, Y.; Garijo, D.; Ratnakar, V.; Khider, D.; Emile-Geay, J.; and Mckay, N. Proceedings of the 16th International Semantic Web Conference, . 2017.
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations [pdf]Paper   bibtex   abstract
WIDOCO: A Wizard for Documenting Ontologies. Garijo, D. Proceedings of the 16th International Semantic Web Conference, . 2017.
WIDOCO: A Wizard for Documenting Ontologies [pdf]Paper   WIDOCO: A Wizard for Documenting Ontologies [link]Website   bibtex   abstract
A controlled crowdsourcing approach for practical ontology extensions and metadata annotations. Gil, Y.; Garijo, D.; Ratnakar, V.; Khider, D.; Emile-Geay, J.; and McKay, N. Volume 10588 LNCS 2017.
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OntoSoft: A distributed semantic registry for scientific software. Gil, Y.; Garijo, D.; Mishra, S.; and Ratnakar, V. In Proceedings of the 2016 IEEE 12th International Conference on e-Science, e-Science 2016, 2017.
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Abstract, link, publish, exploit: An end to end framework for workflow sharing. Garijo, D.; Gil, Y.; and Corcho, O. Future Generation Computer Systems, 75. 2017.
Abstract, link, publish, exploit: An end to end framework for workflow sharing [pdf]Paper   bibtex   abstract
Towards automatic generation of portions of scientific papers for large multi-institutional collaborations based on semantic metadata. Jang, M.; Patted, T.; Gil, Y.; Garijo, D.; Ratnakar, V.; Ji, J.; Wang, P.; McMahon, A.; Thompson, P.; and Jahanshad, N. In CEUR Workshop Proceedings, volume 1931, 2017.
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  2016 (4)
An ontology for videogame interoperability. Parkkila, J.; Radulovic, F.; Garijo, D.; Poveda-Villalón, M.; Ikonen, J.; Porras, J.; and Gómez-Pérez, A. Multimedia Tools and Applications, . 2016.
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Lightning talk: "I solemnly pledge" A manifesto for personal responsibility in the engineering of academic software. Allen, A.; Aragon, C.; Becker, C.; Carver, J.; Chis, A.; Combemale, B.; Croucher, M.; Crowston, K.; Garijo, D.; Gehani, A.; Goble, C.; Haines, R.; Hirschfeld, R.; Howison, J.; Huff, K.; Jay, C.; Katz, D.; Kirchner, C.; Kuksenok, K.; Lämmel, R.; Nierstrasz, O.; Turk, M.; Van Nieuwpoort, R.; Vaughn, M.; and Vinju, J. In CEUR Workshop Proceedings, volume 1686, 2016.
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Automated Hypothesis Testing with Large Scientific Data Repositories. Gil, Y.; Garijo, D.; Ratnakar, V.; Mayani, R.; Adusumilli, R.; and Boyce, H. In Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS), pages 1-6, 2016.
Automated Hypothesis Testing with Large Scientific Data Repositories [pdf]Paper   bibtex   abstract
OntoSoft: A Distributed Semantic Registry for Scientific Software. Gil, Y.; Garijo, D.; Mishra, S.; and Ratnakar, V. In In Proceedings of the Twelfth IEEE Conference on eScience, 2016.
OntoSoft: A Distributed Semantic Registry for Scientific Software [pdf]Paper   bibtex   abstract
  2015 (6)
LDP4ROs: Managing research objects with the W3C linked data platform. Garijo, D.; Mihindukulasooriya, N.; and Corcho, O. In WWW 2015 Companion - Proceedings of the 24th International Conference on World Wide Web, 2015.
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Challenges for provenance analytics over geospatial data. Garijo, D.; Gil, Y.; and Harth, A. Volume 8628 2015.
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OnToology, a tool for collaborative development of ontologies. Alobaid, A.; Garijo, D.; Poveda-Villalón, M.; Santana-Perez, I.; and Corcho, O. In CEUR Workshop Proceedings, volume 1515, 2015.
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Using a suite of ontologies for preserving workflow-centric research objects. Belhajjame, K.; Zhao, J.; Garijo, D.; Gamble, M.; Hettne, K.; Palma, R.; Mina, E.; Corcho, O.; Gómez-Pérez, J.; Bechhofer, S.; Klyne, G.; and Goble, C. Journal of Web Semantics, 32. 2015.
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OntoSoft: Capturing Scientific Software Metadata. Gil, Y.; Ratnakar, V.; and Garijo, D. Proceedings of the 8th International Conference on Knowledge Capture, 32. 2015.
OntoSoft: Capturing Scientific Software Metadata [pdf]Paper   bibtex   abstract
Mining Abstractions in Scientific Workflows. Garijo, D. . 2015.
Mining Abstractions in Scientific Workflows [pdf]Paper   bibtex   abstract
  2014 (6)
The research object suite of ontologies: Sharing and exchanging research data and methods on the open web. Belhajjame, K.; Zhao, J.; Garijo, D.; Hettne, K.; Palma, R.; Corcho, O.; Gomez-Perez, J.; Bechhofer, S.; Klyne, G.; and Goble, C. Technical Report UPM, 2014.
The research object suite of ontologies: Sharing and exchanging research data and methods on the open web [link]Website   bibtex
User requirements for Geospatial Provenance. Garijo, D.; Harth, A.; and Gil, Y. In Provenance Analytics, co-located with the Fifth International Provenance and Annotation Workshop (IPAW), of . Provenance Analytics, co-located with the Fifth International Provenance and Annotation Workshop (IPAW) , 2014.
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Towards workflow ecosystems through semantic and standard representations. Garijo, D.; Gil, Y.; and Corcho, O. In Proceedings of WORKS 2014: The 9th Workshop on Workflows in Support of Large-Scale Science - held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, 2014.
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FragFlow automated fragment detection in scientific workflows. Garijo, D.; Corcho, O.; Gil, Y.; Gutman, B.; Dinov, I.; Thompson, P.; and Toga, A. In Proceedings - 2014 IEEE 10th International Conference on eScience, eScience 2014, volume 1, 2014.
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Workflow reuse in practice: A study of neuroimaging pipeline users. Garijo, D.; Corcho, O.; Gil, Y.; Braskie, M.; Hibar, D.; Hua, X.; Jahanshad, N.; Thompson, P.; and Toga, A. In Proceedings - 2014 IEEE 10th International Conference on eScience, eScience 2014, volume 1, 2014.
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Research Objects for audio processing: Capturing semantics for reproducibility. Page, K.; Palma, R.; Holubowicz, P.; Klyne, G.; Soiland-Reyes, S.; Garijo, D.; Belhajjame, K.; and Mayer, R. In Proceedings of the AES International Conference, 2014.
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  2013 (7)
A workflow PROV-corpus based on Taverna and Wings. Belhajjame, K.; Zhao, J.; Garijo, D.; Garrido, A.; Soiland-Reyes, S.; Alper, P.; and Corcho, O. In Proceedings of the Joint EDBT/ICDT 2013 Workshops, pages 331-332, 2013. ACM
A workflow PROV-corpus based on Taverna and Wings [link]Website   bibtex
Detecting common scientific workflow fragments using execution provenance. Garijo, D.; Corcho, O.; and Gil, Y. In Proceedings of of the seventh international conference on Knowledge capture, pages 33-40, 2013. ACM
Detecting common scientific workflow fragments using execution provenance [link]Website   bibtex
Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome . Garijo, D.; Kinnings, S.; Xie, L.; Xie, L.; Zhang, Y.; Bourne, P., E.; and Gil, Y. PLoS ONE, 8(11). 2013.
Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome  [link]Website   bibtex   21 downloads
Common motifs in scientific workflows: An empirical analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. Future Generation Computer Systems, . 2013.
Common motifs in scientific workflows: An empirical analysis [link]Website   bibtex   7 downloads
On specifying and sharing scientific workflow optimization results using research objects. Holl, S.; Garijo, D.; Belhajjame, K.; Zimmermann, O.; De Giovanni, R.; Obst, M.; and Goble, C. In Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, pages 28-37, 2013. ACM
On specifying and sharing scientific workflow optimization results using research objects [link]Website   bibtex
From preserving data to preserving research: Curation of process and context. Mayer, R.; Pröll, S.; Rauber, A.; Palma, R.; and Garijo, D. Volume 8092 LNCS 2013.
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Transforming meteorological data into linked data. Atemezing, G.; Corcho, O.; Garijo, D.; Mora, J.; Poveda-Villalón, M.; Rozas, P.; Vila-Suero, D.; and Villazón-Terrazas, B. Semantic Web, 4(3). 2013.
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  2012 (12)
PROV-O: The PROV Ontology. Lebo, T.; Sahoo, S.; McGuinness, D.; Belhajjame, K.; Corsar, D.; Cheney, J.; Garijo, D.; Soiland-Reyes, S.; Zednik, S.; and Zhao, J. Technical Report W3C, 2012.
PROV-O: The PROV Ontology [link]Website   bibtex
A Primer for the PROV Provenance Model. Gil, Y.; Miles, S.; Belhajjame, K.; Deus, H.; Garijo, D.; Klyne, G.; Missier, P.; Soiland-Reyes, S.; and Zednik, S. Technical Report World Wide Web Consortium (W3C), 2012.
A Primer for the PROV Provenance Model [link]Website   bibtex
Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse. Belhajjame, K.; Corcho, O.; Garijo, D.; Zhao, J.; Missier, P.; Newman, D.; Palma, R.; Bechhofer, S.; Garcıa, E.; Gómez-Pérez, J., M.; Klyne, G.; Page, K.; Roos, M.; Ruiz, J., E.; Soiland-Reyes, S.; Verdes-Montenegro, L.; De Roure, D.; and Goble, C. In Proceedings of the Second International Conference on the Future of Scholarly Communication and Scientific Publishing Sepublica2012, pages 1-12, 2012.
Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse [pdf]Website   bibtex
Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome. Gil, Y.; and Garijo, D. 2012.
Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome [link]Website   bibtex   1 download
Publishing Linked Data-There is no One-Size-Fits-All Formula. Villazón-Terrazas, B.; Vila-Suero, D.; Garijo, D.; Vilches-Blázquez, L., M.; Poveda-Villalón, M.; Mora, J.; Corcho, O.; and Gómez-Pérez, A. 2012.
Publishing Linked Data-There is no One-Size-Fits-All Formula [pdf]Website   bibtex
Dublin Core to PROV Mapping. Garijo, D.; Eckert, K.; Miles, S.; Panzer, M.; and Trim, C., M. Technical Report World Wide Web Consortium (W3C), 2012.
Dublin Core to PROV Mapping [link]Website   bibtex
Transforming Meteorological Data into Linked Data. Atemezing, G.; Corcho, O.; Garijo, D.; Mora, J.; Poveda-Villalón, M.; Rozas, P.; Vila-Suero, D.; and Villazón-Terrazas, B. to appear in Semantic Web Journal (SWJ), . 2012.
Transforming Meteorological Data into Linked Data [pdf]Website   bibtex
Common Motifs in Scientific Workflows: An Empirical Analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. In 8th IEEE International Conference on eScience 2012, 2012. IEEE Computer Society Press, USA
Common Motifs in Scientific Workflows: An Empirical Analysis [pdf]Website   bibtex   2 downloads
Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data. Garijo, D.; and Gil, Y. In Proceedings of the 2nd International Workshop on Linked Science 2012, 2012.
Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data [pdf]Website   bibtex   2 downloads
Music Ontology to Media Value Chain Ontology and PROV-O Ontology Mapping. Rodriguez, V.; and Garijo, D. Technical Report Ontology Engineering Group, 2012.
Music Ontology to Media Value Chain Ontology and PROV-O Ontology Mapping. [link]Website   bibtex
Publishing linked data - There is no one-size-fits-all formula. Villazón-Terrazas, B.; Vila-Suero, D.; Garijo, D.; Vilches-Blázquez, L.; Poveda-Villalón, M.; Mora, J.; Corcho, O.; and Gómez-Pérez, A. In CEUR Workshop Proceedings, volume 877, 2012.
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Workflow-centric research objects: First class citizens in scholarly discourse. Belhajjame, K.; Corcho, O.; Garijo, D.; Zhao, J.; Missier, P.; Newman, D.; Palma, R.; Bechhofer, S.; García Cuesta, E.; Gómez-Pérez, J.; Klyne, G.; Page, K.; Roos, M.; Ruiz, J.; Soiland-Reyes, S.; Verdes-Montenegro, L.; De Roure, D.; and Goble, C. In CEUR Workshop Proceedings, volume 903, 2012.
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  2011 (6)
Extending DCAM for Metadata Provenance. Eckert, K.; Garijo, D.; and Panzer, M. In DC-2011--The Hague Proceedings, pages 12-25, 2011. OJS (Open Journal Systems)
Extending DCAM for Metadata Provenance [link]Website   bibtex
A provenance aware linked data application for Trip Management and Organization. Garijo, D.; Corcho, O.; and Villazón-Terrazas, B. In Proceedings of the 7th International Conference on Semantic Systems, pages 224-226, 2011. ACM
A provenance aware linked data application for Trip Management and Organization [link]Website   bibtex
A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data . Garijo, D.; and Gil, Y. In Proceedings of the 6th workshop on Workflows in support of large-scale science, pages 47-56, 2011. ACM
A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data  [link]Website   bibtex   2 downloads
Provenance vocabulary mappings. Sahoo, S.; Groth, P.; Hartig, O.; Miles, S.; Coppens, S.; Myers, J.; Gil, Y.; Moreau, L.; Zhao, J.; Panzer, M.; and Garijo, D. Technical Report W3C, 2011.
Provenance vocabulary mappings [link]Website   bibtex
A new approach for publishing workflows: Abstractions, standards, and linked data. Garijo, D.; and Gil, Y. In WORKS'11 - Proceedings of the 6th Workshop on Workflows in Support of Large-Scale Science, Co-located with SC'11, 2011.
bibtex   abstract   2 downloads
A provenance-aware linked data application for trip management and organization. Garijo, D.; Villazón-Terrazas, B.; and Corcho, O. In ACM International Conference Proceeding Series, 2011.
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  2010 (5)
Provenance and Trust. Garijo, D.; Corcho, O.; and Gómez-Perez, A. 2010.
Provenance and Trust [link]Website   bibtex
Deliverable E 1.1, PT1, Project Web N+1: State of the art. 2010. Garijo, D.; and Villazón-Terrazas, B. Technical Report UPM, 2010.
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Deliverable E 2.2, PT2 , Project Web N+1: Definition of the modules of the system. Garijo, D.; and Villazón-Terrazas, B. Technical Report UPM, 2010.
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Provenance XG final report. Gil, Y.; Cheney, J.; Groth, P.; Hartig, O.; Miles, S.; Moreau, L.; Da Silva, P., P.; Coppens, S.; Garijo, D.; Gomez, J., M.; Missier, P.; Myers, J.; Sahoo, S.; and Zhao, J. Technical Report W3C, 2010.
Provenance XG final report [link]Website   bibtex
Phd thesis: Provenance and trust abstract. Garijo, D.; Corcho, O.; and Gómez-Perez, A. In CEUR Workshop Proceedings, volume 623, 2010.
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