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\n  \n 2025\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Large Language Models for Chart Review: How Machine Learning Can Accelerate Hematology Research.\n \n \n \n\n\n \n Lam, B. D; Wang, P.; Ma, S.; Jafari, O.; Kovalenko, I.; and Li, A.\n\n\n \n\n\n\n Blood Vessels, Thrombosis & Hemostasis,100052. 2025.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{lam2025large,\r\n  title={Large Language Models for Chart Review: How Machine Learning Can Accelerate Hematology Research},\r\n  author={Lam, Barbara D and Wang, Peiqi and Ma, Shengling and Jafari, Omid and Kovalenko, Iuliia and Li, Ang},\r\n  journal={Blood Vessels, Thrombosis \\& Hemostasis},\r\n  pages={100052},\r\n  year={2025},\r\n  publisher={Elsevier}\r\n}\r\n
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\n  \n 2024\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n MIMIC-IV-Ext-PE: Using a Large Language Model to Predict Pulmonary Embolism Phenotype in the MIMIC-IV Dataset.\n \n \n \n\n\n \n Lam, B.; Ma, S; Kovalenko, I; Wang, P; Jafari, O; Li, A; and Horng, S\n\n\n \n\n\n\n arXiv preprint. 2024.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{jafari2024mimic,\r\n  title={MIMIC-IV-Ext-PE: Using a Large Language Model to Predict Pulmonary Embolism Phenotype in the MIMIC-IV Dataset},\r\n  author={Lam, BD and Ma, S and Kovalenko, I and Wang, P and Jafari, O and Li, A and Horng, S},\r\n  journal={arXiv preprint},\r\n  year={2024},\r\n  eprint={2411.00044}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n External Validation of EHR-CAT Risk Assessment Model for Cancer-Associated Thrombosis in 150 Healthcare Organizations.\n \n \n \n\n\n \n Li, A.; Kim, R.; Jafari, O.; Ma, S.; Jiang, J. Y.; Fillmore, N. R; La, J.; and Amos, C. I\n\n\n \n\n\n\n Blood, 144: 812. 2024.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{li2024external,\r\n  title={External Validation of EHR-CAT Risk Assessment Model for Cancer-Associated Thrombosis in 150 Healthcare Organizations},\r\n  author={Li, Ang and Kim, Rockbum and Jafari, Omid and Ma, Shengling and Jiang, Jun Yang and Fillmore, Nathanael R and La, Jennifer and Amos, Christopher I},\r\n  journal={Blood},\r\n  volume={144},\r\n  pages={812},\r\n  year={2024},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Optimized Multi-Class VTE-BERT Large Language Model for Prediction of Cancer-Associated Thrombosis Phenotype.\n \n \n \n\n\n \n Li, A.; Jafari, O.; Ma, S.; Maghsoudi, A.; Lam, B. D; Ryu, J.; Jiang, J. Y.; Ranjan, M.; Zhou, E.; and Bandyo, R.\n\n\n \n\n\n\n Blood, 144: 161. 2024.\n \n\n\n\n
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@article{li2024optimized,\r\n  title={Optimized Multi-Class VTE-BERT Large Language Model for Prediction of Cancer-Associated Thrombosis Phenotype},\r\n  author={Li, Ang and Jafari, Omid and Ma, Shengling and Maghsoudi, Arash and Lam, Barbara D and Ryu, Justine and Jiang, Jun Yang and Ranjan, Mrinal and Zhou, Emily and Bandyo, Raka},\r\n  journal={Blood},\r\n  volume={144},\r\n  pages={161},\r\n  year={2024},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n  \n 2021\n \n \n (4)\n \n \n
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\n \n\n \n \n \n \n \n Optimizing Fair Approximate Nearest Neighbor Searches Using Threaded B+-Trees.\n \n \n \n\n\n \n Jafari, O.; Maurya, P.; Islam, K. M.; and Nagarkar, P.\n\n\n \n\n\n\n In International Conference on Similarity Search and Applications, pages 133–147, 2021. Springer\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2021optimizing,\r\n  title={Optimizing Fair Approximate Nearest Neighbor Searches Using Threaded B+-Trees},\r\n  author={Jafari, Omid and Maurya, Preeti and Islam, Khandker Mushfiqul and Nagarkar, Parth},\r\n  booktitle={International Conference on Similarity Search and Applications},\r\n  pages={133--147},\r\n  year={2021},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Exploring State-of-the-Art Nearest Neighbor Search Techniques.\n \n \n \n \n\n\n \n Nagarkar, P.; Bhattacharya, A.; and Jafari, O.\n\n\n \n\n\n\n In 8th ACM IKDD CODS and 26th COMAD, pages 443–446, 2021. ACM\n \n\n\n\n
\n\n\n\n \n \n \"ExploringPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2021exploring,\r\n  title={Exploring State-of-the-Art Nearest Neighbor Search Techniques},\r\n  author={Nagarkar, Parth and Bhattacharya, Arnab and Jafari, Omid},\r\n  booktitle={8th ACM IKDD CODS and 26th COMAD},\r\n  pages={443--446},\r\n  year={2021},\r\n  publisher={ACM},\r\n  url={https://doi.org/10.1145/3430984.3431968}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Experimental Analysis of Locality Sensitive Hashing Techniques for High-Dimensional Approximate Nearest Neighbor Searches.\n \n \n \n \n\n\n \n Jafari, O.; and Nagarkar, P.\n\n\n \n\n\n\n In Databases Theory and Applications, pages 62–73, 2021. Springer\n \n\n\n\n
\n\n\n\n \n \n \"ExperimentalPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 3 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2021experimental,\r\n  title={Experimental Analysis of Locality Sensitive Hashing Techniques for High-Dimensional Approximate Nearest Neighbor Searches},\r\n  author={Jafari, Omid and Nagarkar, Parth},\r\n  booktitle={Databases Theory and Applications},\r\n  pages={62--73},\r\n  year={2021},\r\n  publisher={Springer},\r\n  url={https://link.springer.com/chapter/10.1007%2F978-3-030-69377-0_6}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n A Survey on Locality Sensitive Hashing Algorithms and Their Applications.\n \n \n \n\n\n \n Jafari, O.; Maurya, P.; Nagarkar, P.; Islam, K. M.; and Crushev, C.\n\n\n \n\n\n\n arXiv preprint. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{jafari2021survey,\r\n  title={A Survey on Locality Sensitive Hashing Algorithms and Their Applications},\r\n  author={Jafari, Omid and Maurya, Preeti and Nagarkar, Parth and Islam, Khandker Mushfiqul and Crushev, Chidambaram},\r\n  journal={arXiv preprint},\r\n  year={2021},\r\n  eprint={2102.08942},\r\n  archivePrefix={arXiv},\r\n  primaryClass={cs.DB}\r\n}\r\n\r\n
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\n  \n 2020\n \n \n (4)\n \n \n
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\n \n\n \n \n \n \n \n \n Efficient Bitmap-Based Indexing and Retrieval of Similarity Search Image Queries.\n \n \n \n \n\n\n \n Jafari, O.; Nagarkar, P.; and Montaño, J.\n\n\n \n\n\n\n In IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI), pages 58–61, 2020. IEEE\n \n\n\n\n
\n\n\n\n \n \n \"EfficientPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2020efficient,\r\n  title={Efficient Bitmap-Based Indexing and Retrieval of Similarity Search Image Queries},\r\n  author={Jafari, Omid and Nagarkar, Parth and Monta{\\~n}o, Jonathan},\r\n  booktitle={IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI)},\r\n  pages={58--61},\r\n  year={2020},\r\n  publisher={IEEE},\r\n  url={https://ieeexplore.ieee.org/abstract/document/9094616}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Improving Locality Sensitive Hashing by Efficiently Finding Projected Nearest Neighbors.\n \n \n \n \n\n\n \n Jafari, O.; Nagarkar, P.; and Montaño, J.\n\n\n \n\n\n\n In Similarity Search and Applications, pages 323–337, 2020. Springer\n \n\n\n\n
\n\n\n\n \n \n \"ImprovingPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 2 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2020improving,\r\n  title={Improving Locality Sensitive Hashing by Efficiently Finding Projected Nearest Neighbors},\r\n  author={Jafari, Omid and Nagarkar, Parth and Monta{\\~n}o, Jonathan},\r\n  booktitle={Similarity Search and Applications},\r\n  pages={323--337},\r\n  year={2020},\r\n  publisher={Springer},\r\n  url={https://link.springer.com/chapter/10.1007%2F978-3-030-60936-8_25}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n mmLSH: A Practical and Efficient Technique for Processing Approximate Nearest Neighbor Queries on Multimedia Data.\n \n \n \n \n\n\n \n Jafari, O.; Nagarkar, P.; and Montaño, J.\n\n\n \n\n\n\n In Similarity Search and Applications, pages 47–61, 2020. Springer\n \n\n\n\n
\n\n\n\n \n \n \"mmLSH:Paper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2020mmLSH,\r\n  title={mmLSH: A Practical and Efficient Technique for Processing Approximate Nearest Neighbor Queries on Multimedia Data},\r\n  author={Jafari, Omid and Nagarkar, Parth and Monta{\\~n}o, Jonathan},\r\n  booktitle={Similarity Search and Applications},\r\n  pages={47--61},\r\n  year={2020},\r\n  publisher={Springer},\r\n  url={https://link.springer.com/chapter/10.1007%2F978-3-030-60936-8_4}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n SatelliteNER: An Effective Named Entity Recognition Model for the Satellite Domain.\n \n \n \n \n\n\n \n Jafari, O.; Nagarkar, P.; Thatte, B.; and Ingram, C.\n\n\n \n\n\n\n In Proceedings of the 12th International Joint Conference on Knowledge Discovery, Knowledge Engineering, and Knowledge Management (IC3K), pages 100–107, 2020. SCITEPRESS\n \n\n\n\n
\n\n\n\n \n \n \"SatelliteNER:Paper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2020satellitener,\r\n  title={SatelliteNER: An Effective Named Entity Recognition Model for the Satellite Domain},\r\n  author={Jafari, Omid and Nagarkar, Parth and Thatte, Bhagwan and Ingram, Carl},\r\n  booktitle={Proceedings of the 12th International Joint Conference on Knowledge Discovery, Knowledge Engineering, and Knowledge Management (IC3K)},\r\n  pages={100--107},\r\n  year={2020},\r\n  publisher={SCITEPRESS},\r\n  url={https://doi.org/10.5220/0010147401000107}\r\n}\r\n\r\n
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\n  \n 2019\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n \n qwLSH: Cache-Conscious Indexing for Processing Similarity Search Query Workloads in High-Dimensional Spaces.\n \n \n \n \n\n\n \n Jafari, O.; Ossorgin, J.; and Nagarkar, P.\n\n\n \n\n\n\n In Proceedings of the International Conference on Multimedia Retrieval, pages 329–333, 2019. ACM\n \n\n\n\n
\n\n\n\n \n \n \"qwLSH:Paper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2019qwlsh,\r\n  title={qwLSH: Cache-Conscious Indexing for Processing Similarity Search Query Workloads in High-Dimensional Spaces},\r\n  author={Jafari, Omid and Ossorgin, John and Nagarkar, Parth},\r\n  booktitle={Proceedings of the International Conference on Multimedia Retrieval},\r\n  pages={329--333},\r\n  year={2019},\r\n  publisher={ACM},\r\n  url={https://dl.acm.org/doi/abs/10.1145/3323873.3325048}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Drawbacks and Proposed Solutions for Real-Time Processing on Existing State-of-the-Art Locality Sensitive Hashing Techniques.\n \n \n \n \n\n\n \n Jafari, O.; Islam, K. M.; and Nagarkar, P.\n\n\n \n\n\n\n In 5th International Conference on Signal and Image Processing (SIGI), volume 9, pages 111–125, 2019. \n \n\n\n\n
\n\n\n\n \n \n \"DrawbacksPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 1 download\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2019drawbacks,\r\n  title={Drawbacks and Proposed Solutions for Real-Time Processing on Existing State-of-the-Art Locality Sensitive Hashing Techniques},\r\n  author={Jafari, Omid and Islam, Khandker Mushfiqul and Nagarkar, Parth},\r\n  booktitle={5th International Conference on Signal and Image Processing (SIGI)},\r\n  volume={9},\r\n  number={14},\r\n  pages={111--125},\r\n  year={2019},\r\n  url={https://aircconline.com/csit/papers/vol9/csit91410.pdf}\r\n}\r\n\r\n
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\n  \n 2015\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n \n M/M/1 Queue Analysis and Case Study of a Call Center (In Persian).\n \n \n \n \n\n\n \n Jafari, O.; Ghasvari, D.; and Vafaei Jahan, M.\n\n\n \n\n\n\n In 2nd International Conference on Knowledge, Information, and Software Engineering (ICKIS), pages 791–798, 2015. \n \n\n\n\n
\n\n\n\n \n \n \"M/M/1Paper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@inproceedings{jafari2015mm1,\r\n  title={M/M/1 Queue Analysis and Case Study of a Call Center (In Persian)},\r\n  author={Jafari, Omid and Ghasvari, Donya and Vafaei Jahan, Majid},\r\n  booktitle={2nd International Conference on Knowledge, Information, and Software Engineering (ICKIS)},\r\n  pages={791--798},\r\n  year={2015},\r\n  url={https://www.civilica.com/Paper-ICTCK02-ICTCK02_087.html}\r\n}\r\n\r\n
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