var bibbase_data = {"data":"\"Loading..\"\n\n
\n\n \n\n \n\n \n \n\n \n\n \n \n\n \n\n \n
\n generated by\n \n \"bibbase.org\"\n\n \n
\n \n\n
\n\n \n\n\n
\n\n Excellent! Next you can\n create a new website with this list, or\n embed it in an existing web page by copying & pasting\n any of the following snippets.\n\n
\n JavaScript\n (easiest)\n
\n \n <script src=\"https://bibbase.org/show?bib=https%3A%2F%2Fapi.zotero.org%2Fusers%2F3476755%2Fcollections%2FZVB2GU6N%2Fitems%3Fkey%3DckhubDoO51X1cQZZ35NkGdxk%26format%3Dbibtex%26limit%3D100&jsonp=1&authorFirst=1&hidemenu=true&commas=true&sort=author_short&groupby=&filter=authors:(Agostini)&jsonp=1\"></script>\n \n
\n\n PHP\n
\n \n <?php\n $contents = file_get_contents(\"https://bibbase.org/show?bib=https%3A%2F%2Fapi.zotero.org%2Fusers%2F3476755%2Fcollections%2FZVB2GU6N%2Fitems%3Fkey%3DckhubDoO51X1cQZZ35NkGdxk%26format%3Dbibtex%26limit%3D100&jsonp=1&authorFirst=1&hidemenu=true&commas=true&sort=author_short&groupby=&filter=authors:(Agostini)\");\n print_r($contents);\n ?>\n \n
\n\n iFrame\n (not recommended)\n
\n \n <iframe src=\"https://bibbase.org/show?bib=https%3A%2F%2Fapi.zotero.org%2Fusers%2F3476755%2Fcollections%2FZVB2GU6N%2Fitems%3Fkey%3DckhubDoO51X1cQZZ35NkGdxk%26format%3Dbibtex%26limit%3D100&jsonp=1&authorFirst=1&hidemenu=true&commas=true&sort=author_short&groupby=&filter=authors:(Agostini)\"></iframe>\n \n
\n\n

\n For more details see the documention.\n

\n
\n
\n\n
\n\n This is a preview! To use this list on your own web site\n or create a new web site from it,\n create a free account. The file will be added\n and you will be able to edit it in the File Manager.\n We will show you instructions once you've created your account.\n
\n\n
\n\n

To the site owner:

\n\n

Action required! Mendeley is changing its\n API. In order to keep using Mendeley with BibBase past April\n 14th, you need to:\n

    \n
  1. renew the authorization for BibBase on Mendeley, and
    2. \n
  2. update the BibBase URL\n in your page the same way you did when you initially set up\n this page.\n
    3. \n
\n

\n\n

\n \n \n Fix it now\n

\n
\n\n
\n\n\n
\n \n \n
\n \n\n \n \n Gorsky, G., Bourdin, G., Lombard, F., Pedrotti, M. L., Audrain, S., Bin, N., Boss, E., Bowler, C., Cassar, N., Caudan, L., Chabot, G., Cohen, N. R., Cron, D., De Vargas, C., Dolan, J. R., Douville, E., Elineau, A., Flores, J. M., Ghiglione, J. F., Haëntjens, N., Hertau, M., John, S. G., Kelly, R. L., Koren, I., Lin, Y., Marie, D., Moulin, C., Moucherie, Y., Pesant, S., Picheral, M., Poulain, J., Pujo-Pay, M., Reverdin, G., Romac, S., Sullivan, M. B., Trainic, M., Tressol, M., Troublé, R., Vardi, A., Voolstra, C. R., Wincker, P., Agostini, S., Banaigs, B., Boissin, E., Forcioli, D., Furla, P., Galand, P. E., Gilson, E., Reynaud, S., Sunagawa, S., Thomas, O. P., Thurber, R. L. V., Zoccola, D., Planes, S., Allemand, D., & Karsenti, E.\n\n\n \n \n \n \n \n Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018).\n \n \n \n \n\n\n \n\n\n\n Frontiers in Marine Science, 6: 750. December 2019.\n \n\n\n\n
\n\n\n\n \n \n \"ExpandingPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 9 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{gorsky_expanding_2019,\n\ttitle = {Expanding {Tara} {Oceans} {Protocols} for {Underway}, {Ecosystemic} {Sampling} of the {Ocean}-{Atmosphere} {Interface} {During} {Tara} {Pacific} {Expedition} (2016–2018)},\n\tvolume = {6},\n\tissn = {2296-7745},\n\turl = {https://www.frontiersin.org/article/10.3389/fmars.2019.00750/full},\n\tdoi = {10.3389/fmars.2019.00750},\n\turldate = {2021-07-27},\n\tjournal = {Frontiers in Marine Science},\n\tauthor = {Gorsky, Gabriel and Bourdin, Guillaume and Lombard, Fabien and Pedrotti, Maria Luiza and Audrain, Samuel and Bin, Nicolas and Boss, Emmanuel and Bowler, Chris and Cassar, Nicolas and Caudan, Loic and Chabot, Genevieve and Cohen, Natalie R. and Cron, Daniel and De Vargas, Colomban and Dolan, John R. and Douville, Eric and Elineau, Amanda and Flores, J. Michel and Ghiglione, Jean Francois and Haëntjens, Nils and Hertau, Martin and John, Seth G. and Kelly, Rachel L. and Koren, Ilan and Lin, Yajuan and Marie, Dominique and Moulin, Clémentine and Moucherie, Yohann and Pesant, Stéphane and Picheral, Marc and Poulain, Julie and Pujo-Pay, Mireille and Reverdin, Gilles and Romac, Sarah and Sullivan, Mathew B. and Trainic, Miri and Tressol, Marc and Troublé, Romain and Vardi, Assaf and Voolstra, Christian R. and Wincker, Patrick and Agostini, Sylvain and Banaigs, Bernard and Boissin, Emilie and Forcioli, Didier and Furla, Paola and Galand, Pierre E. and Gilson, Eric and Reynaud, Stéphanie and Sunagawa, Shinichi and Thomas, Olivier P. and Thurber, Rebecca Lisette Vega and Zoccola, Didier and Planes, Serge and Allemand, Denis and Karsenti, Eric},\n\tmonth = dec,\n\tyear = {2019},\n\tpages = {750},\n}\n\n
\n
\n\n\n\n
\n\n\n
\n \n\n \n \n Harvey, B. P., Agostini, S., Kon, K., Wada, S., & Hall-Spencer, J. M.\n\n\n \n \n \n \n \n Diatoms Dominate and Alter Marine Food-Webs When CO$_{\\textrm{2}}$ Rises.\n \n \n \n \n\n\n \n\n\n\n Diversity, 11(12): 242. December 2019.\n \n\n\n\n
\n\n\n\n \n \n \"DiatomsPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n  \n \n 34 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{harvey_diatoms_2019,\n\ttitle = {Diatoms {Dominate} and {Alter} {Marine} {Food}-{Webs} {When} {CO}$_{\\textrm{2}}$ {Rises}},\n\tvolume = {11},\n\tissn = {1424-2818},\n\turl = {https://www.mdpi.com/1424-2818/11/12/242},\n\tdoi = {10.3390/d11120242},\n\tabstract = {Diatoms are so important in ocean food-webs that any human induced changes in their abundance could have major effects on the ecology of our seas. The large chain-forming diatom Biddulphia biddulphiana greatly increases in abundance as pCO2 increases along natural seawater CO2 gradients in the north Pacific Ocean. In areas with reference levels of pCO2, it was hard to find, but as seawater carbon dioxide levels rose, it replaced seaweeds and became the main habitat-forming species on the seabed. This diatom algal turf supported a marine invertebrate community that was much less diverse and completely differed from the benthic communities found at present-day levels of pCO2. Seawater CO2 enrichment stimulated the growth and photosynthetic efficiency of benthic diatoms, but reduced the abundance of calcified grazers such as gastropods and sea urchins. These observations suggest that ocean acidification will shift photic zone community composition so that coastal food-web structure and ecosystem function are homogenised, simplified, and more strongly affected by seasonal algal blooms.},\n\tlanguage = {en},\n\tnumber = {12},\n\turldate = {2021-07-27},\n\tjournal = {Diversity},\n\tauthor = {Harvey, Ben P. and Agostini, Sylvain and Kon, Koetsu and Wada, Shigeki and Hall-Spencer, Jason M.},\n\tmonth = dec,\n\tyear = {2019},\n\tpages = {242},\n}\n\n
\n
\n\n\n
\n Diatoms are so important in ocean food-webs that any human induced changes in their abundance could have major effects on the ecology of our seas. The large chain-forming diatom Biddulphia biddulphiana greatly increases in abundance as pCO2 increases along natural seawater CO2 gradients in the north Pacific Ocean. In areas with reference levels of pCO2, it was hard to find, but as seawater carbon dioxide levels rose, it replaced seaweeds and became the main habitat-forming species on the seabed. This diatom algal turf supported a marine invertebrate community that was much less diverse and completely differed from the benthic communities found at present-day levels of pCO2. Seawater CO2 enrichment stimulated the growth and photosynthetic efficiency of benthic diatoms, but reduced the abundance of calcified grazers such as gastropods and sea urchins. These observations suggest that ocean acidification will shift photic zone community composition so that coastal food-web structure and ecosystem function are homogenised, simplified, and more strongly affected by seasonal algal blooms.\n
\n\n\n
\n\n\n
\n \n\n \n \n Nakabayashi, A., Yamakita, T., Nakamura, T., Aizawa, H., Kitano, Y. F, Iguchi, A., Yamano, H., Nagai, S., Agostini, S., Teshima, K. M., & Yasuda, N.\n\n\n \n \n \n \n \n The potential role of temperate Japanese regions as refugia for the coral Acropora hyacinthus in the face of climate change.\n \n \n \n \n\n\n \n\n\n\n Scientific Reports, 9(1): 1892. December 2019.\n \n\n\n\n
\n\n\n\n \n \n \"ThePaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{nakabayashi_potential_2019,\n\ttitle = {The potential role of temperate {Japanese} regions as refugia for the coral \\textit{{Acropora} hyacinthus} in the face of climate change},\n\tvolume = {9},\n\tissn = {2045-2322},\n\turl = {http://www.nature.com/articles/s41598-018-38333-5},\n\tdoi = {10.1038/s41598-018-38333-5},\n\tlanguage = {en},\n\tnumber = {1},\n\turldate = {2021-07-27},\n\tjournal = {Scientific Reports},\n\tauthor = {Nakabayashi, Aki and Yamakita, Takehisa and Nakamura, Takashi and Aizawa, Hiroaki and Kitano, Yuko F and Iguchi, Akira and Yamano, Hiroya and Nagai, Satoshi and Agostini, Sylvain and Teshima, Kosuke M. and Yasuda, Nina},\n\tmonth = dec,\n\tyear = {2019},\n\tpages = {1892},\n}\n\n
\n
\n\n\n\n
\n\n\n
\n \n\n \n \n Planes, S., Allemand, D., Agostini, S., Banaigs, B., Boissin, E., Boss, E., Bourdin, G., Bowler, C., Douville, E., Flores, J. M., Forcioli, D., Furla, P., Galand, P. E., Ghiglione, J., Gilson, E., Lombard, F., Moulin, C., Pesant, S., Poulain, J., Reynaud, S., Romac, S., Sullivan, M. B., Sunagawa, S., Thomas, O. P., Troublé, R., de Vargas, C., Vega Thurber, R., Voolstra, C. R., Wincker, P., Zoccola, D., & the Tara Pacific Consortium\n\n\n \n \n \n \n \n The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean.\n \n \n \n \n\n\n \n\n\n\n PLOS Biology, 17(9): e3000483. September 2019.\n \n\n\n\n
\n\n\n\n \n \n \"ThePaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 9 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{planes_tara_2019,\n\ttitle = {The {Tara} {Pacific} expedition—{A} pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the {Pacific} {Ocean}},\n\tvolume = {17},\n\tissn = {1545-7885},\n\turl = {https://dx.plos.org/10.1371/journal.pbio.3000483},\n\tdoi = {10.1371/journal.pbio.3000483},\n\tlanguage = {en},\n\tnumber = {9},\n\turldate = {2021-07-27},\n\tjournal = {PLOS Biology},\n\tauthor = {Planes, Serge and Allemand, Denis and Agostini, Sylvain and Banaigs, Bernard and Boissin, Emilie and Boss, Emmanuel and Bourdin, Guillaume and Bowler, Chris and Douville, Eric and Flores, J. Michel and Forcioli, Didier and Furla, Paola and Galand, Pierre E. and Ghiglione, Jean-François and Gilson, Eric and Lombard, Fabien and Moulin, Clémentine and Pesant, Stephane and Poulain, Julie and Reynaud, Stéphanie and Romac, Sarah and Sullivan, Matthew B. and Sunagawa, Shinichi and Thomas, Olivier P. and Troublé, Romain and de Vargas, Colomban and Vega Thurber, Rebecca and Voolstra, Christian R. and Wincker, Patrick and Zoccola, Didier and {the Tara Pacific Consortium}},\n\tmonth = sep,\n\tyear = {2019},\n\tpages = {e3000483},\n}\n\n
\n
\n\n\n\n
\n\n\n
\n \n\n \n \n Witkowski, C. R., Agostini, S., Harvey, B. P., van der Meer, M. T. J., Sinninghe Damsté, J. S., & Schouten, S.\n\n\n \n \n \n \n \n Validation of carbon isotope fractionation in algal lipids as a pCO$_{\\textrm{2}}$ proxy using a natural CO$_{\\textrm{2}}$ seep (Shikine Island, Japan).\n \n \n \n \n\n\n \n\n\n\n Biogeosciences, 16(22): 4451–4461. November 2019.\n \n\n\n\n
\n\n\n\n \n \n \"ValidationPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{witkowski_validation_2019,\n\ttitle = {Validation of carbon isotope fractionation in algal lipids as a \\textit{p}{CO}$_{\\textrm{2}}$ proxy using a natural {CO}$_{\\textrm{2}}$ seep ({Shikine} {Island}, {Japan})},\n\tvolume = {16},\n\tissn = {1726-4189},\n\turl = {https://bg.copernicus.org/articles/16/4451/2019/},\n\tdoi = {10.5194/bg-16-4451-2019},\n\tabstract = {Abstract. Carbon dioxide concentrations in the atmosphere play an\nintegral role in many Earth system dynamics, including its influence on\nglobal temperature. The past can provide insights into these dynamics, but\nunfortunately reconstructing long-term trends of atmospheric carbon dioxide\n(expressed in partial pressure; pCO2) remains a challenge in\npaleoclimatology. One promising approach for reconstructing past pCO2\nutilizes the isotopic fractionation associated with CO2 fixation during\nphotosynthesis into organic matter (εp). Previous studies have focused\nprimarily on testing estimates of εp derived from the δ13C\nof species-specific alkenone compounds in laboratory cultures and mesocosm\nexperiments. Here, we analyze εp derived from the δ13C of\nmore general algal biomarkers, i.e., compounds derived from a multitude of\nspecies from sites near a CO2 seep off the coast of Shikine Island\n(Japan), a natural environment with CO2 concentrations ranging from\nambient (ca. 310 µatm) to elevated (ca. 770 µatm) pCO2. We observed\nstrong, consistent δ13C shifts in several algal biomarkers from\na variety of sample matrices over the steep CO2 gradient. Of the three\ngeneral algal biomarkers explored here, namely loliolide, phytol, and\ncholesterol, εp positively correlates with pCO2, in agreement with\nεp theory and previous culture studies. pCO2 reconstructed from the\nεp of general algal biomarkers show the same trends throughout, as well\nas the correct control values, but with lower absolute reconstructed values\nthan the measured values at the elevated pCO2 sites. Our results show\nthat naturally occurring CO2 seeps may provide useful testing grounds\nfor pCO2 proxies and that general algal biomarkers show promise for\nreconstructing past pCO2.},\n\tlanguage = {en},\n\tnumber = {22},\n\turldate = {2021-07-27},\n\tjournal = {Biogeosciences},\n\tauthor = {Witkowski, Caitlyn R. and Agostini, Sylvain and Harvey, Ben P. and van der Meer, Marcel T. J. and Sinninghe Damsté, Jaap S. and Schouten, Stefan},\n\tmonth = nov,\n\tyear = {2019},\n\tpages = {4451--4461},\n}\n\n
\n
\n\n\n
\n Abstract. Carbon dioxide concentrations in the atmosphere play an integral role in many Earth system dynamics, including its influence on global temperature. The past can provide insights into these dynamics, but unfortunately reconstructing long-term trends of atmospheric carbon dioxide (expressed in partial pressure; pCO2) remains a challenge in paleoclimatology. One promising approach for reconstructing past pCO2 utilizes the isotopic fractionation associated with CO2 fixation during photosynthesis into organic matter (εp). Previous studies have focused primarily on testing estimates of εp derived from the δ13C of species-specific alkenone compounds in laboratory cultures and mesocosm experiments. Here, we analyze εp derived from the δ13C of more general algal biomarkers, i.e., compounds derived from a multitude of species from sites near a CO2 seep off the coast of Shikine Island (Japan), a natural environment with CO2 concentrations ranging from ambient (ca. 310 µatm) to elevated (ca. 770 µatm) pCO2. We observed strong, consistent δ13C shifts in several algal biomarkers from a variety of sample matrices over the steep CO2 gradient. Of the three general algal biomarkers explored here, namely loliolide, phytol, and cholesterol, εp positively correlates with pCO2, in agreement with εp theory and previous culture studies. pCO2 reconstructed from the εp of general algal biomarkers show the same trends throughout, as well as the correct control values, but with lower absolute reconstructed values than the measured values at the elevated pCO2 sites. Our results show that naturally occurring CO2 seeps may provide useful testing grounds for pCO2 proxies and that general algal biomarkers show promise for reconstructing past pCO2.\n
\n\n\n
\n\n\n\n\n\n
\n\n\n \n\n \n \n \n \n\n
\n"}; document.write(bibbase_data.data);