var bibbase_data = {"data":"<img src=\"//bibbase.org/img/ajax-loader.gif\" id=\"spinner\"\n  style=\"display: none;\" alt=\"Loading..\" />\n\n<div id=\"bibbase\">\n\n  <script type=\"text/javascript\">\n    var bibbase = {\n      params: {\"bib\":\"https://bibbase.org/network/files/9BjPwg3giXHBfBM4K\",\"jsonp\":\"1\",\"noBootstrap\":\"1\",\"host\":\"bibbase.org\",\"ssl\":false},\n      data: [{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Cyclosporine A Directly Affects Human And Mouse B Cell Migration In Vitro By Disrupting A HIF-1A dependent, O2 Sensing, Molecular Switch\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hilchey\"],\"firstnames\":[\"Shannon\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Emo\"],\"firstnames\":[\"Jason\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Li\"],\"firstnames\":[\"Dongmei\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Garigen\"],\"firstnames\":[\"Jessica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wang\"],\"firstnames\":[\"Jiong\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mendelson\"],\"firstnames\":[\"Eric\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Cipolla\"],\"firstnames\":[\"Valentina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zand\"],\"firstnames\":[\"Martin\",\"S\"],\"suffixes\":[]}],\"journal\":\"BMC immunology\",\"volume\":\"21\",\"number\":\"1\",\"pages\":\"1–18\",\"year\":\"2020\",\"publisher\":\"BioMed Central\",\"bibtex\":\"@article{hilchey2020cyclosporine,\\n  title={Cyclosporine A Directly Affects Human And Mouse B Cell Migration In Vitro By Disrupting A HIF-1A dependent, O2 Sensing, Molecular Switch},\\n  author={Hilchey, Shannon P and Palshikar, Mukta G and Emo, Jason A and Li, Dongmei and Garigen, Jessica and Wang, Jiong and Mendelson, Eric S and Cipolla, Valentina and Thakar, Juilee and Zand, Martin S},\\n  journal={BMC immunology},\\n  volume={21},\\n  number={1},\\n  pages={1--18},\\n  year={2020},\\n  publisher={BioMed Central}\\n}\\n\\n\",\"author_short\":[\"Hilchey, S. P\",\"Palshikar, M. G\",\"Emo, J. A\",\"Li, D.\",\"Garigen, J.\",\"Wang, J.\",\"Mendelson, E. S\",\"Cipolla, V.\",\"Thakar, J.\",\"Zand, M. S\"],\"key\":\"hilchey2020cyclosporine\",\"id\":\"hilchey2020cyclosporine\",\"bibbaseid\":\"hilchey-palshikar-emo-li-garigen-wang-mendelson-cipolla-etal-cyclosporineadirectlyaffectshumanandmousebcellmigrationinvitrobydisruptingahif1adependento2sensingmolecularswitch-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Executable pathway analysis using ensemble discrete-state modeling for large-scale data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palli\"],\"firstnames\":[\"Rohith\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]}],\"journal\":\"PLoS computational biology\",\"volume\":\"15\",\"number\":\"9\",\"pages\":\"e1007317\",\"year\":\"2019\",\"publisher\":\"Public Library of Science San Francisco, CA USA\",\"bibtex\":\"@article{palli2019executable,\\n  title={Executable pathway analysis using ensemble discrete-state modeling for large-scale data},\\n  author={Palli, Rohith and Palshikar, Mukta G and Thakar, Juilee},\\n  journal={PLoS computational biology},\\n  volume={15},\\n  number={9},\\n  pages={e1007317},\\n  year={2019},\\n  publisher={Public Library of Science San Francisco, CA USA}\\n}\\n\\n\",\"author_short\":[\"Palli, R.\",\"Palshikar, M. G\",\"Thakar, J.\"],\"key\":\"palli2019executable\",\"id\":\"palli2019executable\",\"bibbaseid\":\"palli-palshikar-thakar-executablepathwayanalysisusingensemblediscretestatemodelingforlargescaledata-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Characterization of platelet signature on monocytes isolated from HIV infected individuals\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Suwunnakorn\"],\"firstnames\":[\"Sumanun\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Singh\"],\"firstnames\":[\"Meera\",\"V\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Singh\"],\"firstnames\":[\"Vir\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Weber\"],\"firstnames\":[\"Emily\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Maggirwar\"],\"firstnames\":[\"Sanjay\",\"B\"],\"suffixes\":[]}],\"journal\":\"The Journal of Immunology\",\"volume\":\"204\",\"number\":\"1_Supplement\",\"pages\":\"248–17\",\"year\":\"2020\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{suwunnakorn2020characterization,\\n  title={Characterization of platelet signature on monocytes isolated from HIV infected individuals},\\n  author={Suwunnakorn, Sumanun and Singh, Meera V and Singh, Vir B and Palshikar, Mukta and Thakar, Juilee and Weber, Emily A and Maggirwar, Sanjay B},\\n  journal={The Journal of Immunology},\\n  volume={204},\\n  number={1\\\\_Supplement},\\n  pages={248--17},\\n  year={2020},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Suwunnakorn, S.\",\"Singh, M. V\",\"Singh, V. B\",\"Palshikar, M.\",\"Thakar, J.\",\"Weber, E. A\",\"Maggirwar, S. B\"],\"key\":\"suwunnakorn2020characterization\",\"id\":\"suwunnakorn2020characterization\",\"bibbaseid\":\"suwunnakorn-singh-singh-palshikar-thakar-weber-maggirwar-characterizationofplateletsignatureonmonocytesisolatedfromhivinfectedindividuals-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"WikiNetworks: translating manually created biological pathways for topological analysis\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hilchey\"],\"firstnames\":[\"Shannon\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zand\"],\"firstnames\":[\"Martin\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"38\",\"number\":\"3\",\"pages\":\"869–871\",\"year\":\"2022\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{palshikar2022wikinetworks,\\n  title={WikiNetworks: translating manually created biological pathways for topological analysis},\\n  author={Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\\n  journal={Bioinformatics},\\n  volume={38},\\n  number={3},\\n  pages={869--871},\\n  year={2022},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Palshikar, M. G\",\"Hilchey, S. P\",\"Zand, M. S\",\"Thakar, J.\"],\"key\":\"palshikar2022wikinetworks\",\"id\":\"palshikar2022wikinetworks\",\"bibbaseid\":\"palshikar-hilchey-zand-thakar-wikinetworkstranslatingmanuallycreatedbiologicalpathwaysfortopologicalanalysis-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hilchey\"],\"firstnames\":[\"Shannon\",\"P.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mendelson\"],\"firstnames\":[\"Eric\",\"S.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Shen\"],\"firstnames\":[\"Shichen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Rasam\"],\"firstnames\":[\"Sailee\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Emo\"],\"firstnames\":[\"Jason\",\"A.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Qu\"],\"firstnames\":[\"Jun\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zand\"],\"firstnames\":[\"Martin\",\"S.\"],\"suffixes\":[]}],\"journal\":\"Life\",\"volume\":\"12\",\"number\":\"8\",\"pages\":\"1284\",\"year\":\"2022\",\"publisher\":\"MDPI\",\"bibtex\":\"@article{hilchey2022cyclosporine,\\n  title={Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels},\\n  author={Hilchey, Shannon P. and Palshikar, Mukta G. and Mendelson, Eric S. and Shen, Shichen and Rasam, Sailee and Emo, Jason A. and Qu, Jun and Thakar, Juilee and Zand, Martin S.},\\n  journal={Life},\\n  volume={12},\\n  number={8},\\n  pages={1284},\\n  year={2022},\\n  publisher={MDPI}\\n}\\n\\n\",\"author_short\":[\"Hilchey, S. P.\",\"Palshikar, M. G.\",\"Mendelson, E. S.\",\"Shen, S.\",\"Rasam, S.\",\"Emo, J. A.\",\"Qu, J.\",\"Thakar, J.\",\"Zand, M. S.\"],\"key\":\"hilchey2022cyclosporine\",\"id\":\"hilchey2022cyclosporine\",\"bibbaseid\":\"hilchey-palshikar-mendelson-shen-rasam-emo-qu-thakar-etal-cyclosporineamodulateslsp1proteinlevelsinhumanbcellstoattenuatebcellmigrationatlowo2levels-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Executable models of immune signaling pathways in HIV-associated atherosclerosis\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palli\"],\"firstnames\":[\"Rohith\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tyrell\"],\"firstnames\":[\"Alicia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Maggirwar\"],\"firstnames\":[\"Sanjay\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schifitto\"],\"firstnames\":[\"Giovanni\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Singh\"],\"firstnames\":[\"Meera\",\"V.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]}],\"journal\":\"npj Systems Biology and Applications\",\"volume\":\"8\",\"number\":\"1\",\"pages\":\"35\",\"year\":\"2022\",\"publisher\":\"Springer Nature\",\"bibtex\":\"@article{palshikar2022executable,\\n  title={Executable models of immune signaling pathways in HIV-associated atherosclerosis},\\n  author={Palshikar, Mukta G. and Palli, Rohith and Tyrell, Alicia and Maggirwar, Sanjay and Schifitto, Giovanni and Singh, Meera V. and Thakar, Juilee},\\n  journal={npj Systems Biology and Applications},\\n  volume={8},\\n  number={1},\\n  pages={35},\\n  year={2022},\\n  publisher={Springer Nature}\\n}\\n\\n\",\"author_short\":[\"Palshikar, M. G.\",\"Palli, R.\",\"Tyrell, A.\",\"Maggirwar, S.\",\"Schifitto, G.\",\"Singh, M. V.\",\"Thakar, J.\"],\"key\":\"palshikar2022executable\",\"id\":\"palshikar2022executable\",\"bibbaseid\":\"palshikar-palli-tyrell-maggirwar-schifitto-singh-thakar-executablemodelsofimmunesignalingpathwaysinhivassociatedatherosclerosis-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Executable network models of integrated multiomics data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Min\"],\"firstnames\":[\"Xiaojun\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Crystal\"],\"firstnames\":[\"Alexander\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Meng\"],\"firstnames\":[\"Jiayue\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hilchey\"],\"firstnames\":[\"Shannon\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zand\"],\"firstnames\":[\"Martin\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]}],\"journal\":\"Journal of Proteome Research\",\"volume\":\"22\",\"number\":\"5\",\"pages\":\"1546–1556\",\"year\":\"2023\",\"publisher\":\"American Chemical Society\",\"bibtex\":\"@article{palshikar2023executable,\\n  title={Executable network models of integrated multiomics data},\\n  author={Palshikar, Mukta G and Min, Xiaojun and Crystal, Alexander and Meng, Jiayue and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\\n  journal={Journal of Proteome Research},\\n  volume={22},\\n  number={5},\\n  pages={1546--1556},\\n  year={2023},\\n  publisher={American Chemical Society}\\n}\\n\\n\",\"author_short\":[\"Palshikar, M. G\",\"Min, X.\",\"Crystal, A.\",\"Meng, J.\",\"Hilchey, S. P\",\"Zand, M. S\",\"Thakar, J.\"],\"key\":\"palshikar2023executable\",\"id\":\"palshikar2023executable\",\"bibbaseid\":\"palshikar-min-crystal-meng-hilchey-zand-thakar-executablenetworkmodelsofintegratedmultiomicsdata-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"phdthesis\",\"type\":\"phdthesis\",\"title\":\"Executable Models of Signaling Pathways Built Using Omics Data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]}],\"year\":\"2023\",\"school\":\"University of Rochester\",\"bibtex\":\"@phdthesis{palshikar2023executable,\\n  title={Executable Models of Signaling Pathways Built Using Omics Data},\\n  author={Palshikar, Mukta G},\\n  year={2023},\\n  school={University of Rochester}\\n}\\n\\n\",\"author_short\":[\"Palshikar, M. G\"],\"key\":\"palshikar2023executable-1\",\"id\":\"palshikar2023executable-1\",\"bibbaseid\":\"palshikar-executablemodelsofsignalingpathwaysbuiltusingomicsdata-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Kassis\"],\"firstnames\":[\"George\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hilchey\"],\"firstnames\":[\"Shannon\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zand\"],\"firstnames\":[\"Martin\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Thakar\"],\"firstnames\":[\"Juilee\"],\"suffixes\":[]}],\"journal\":\"Journal of theoretical biology\",\"volume\":\"583\",\"pages\":\"111769\",\"year\":\"2024\",\"publisher\":\"Academic Press\",\"bibtex\":\"@article{kassis2024discrete,\\n  title={Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution},\\n  author={Kassis, George and Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\\n  journal={Journal of theoretical biology},\\n  volume={583},\\n  pages={111769},\\n  year={2024},\\n  publisher={Academic Press}\\n}\\n\\n\",\"author_short\":[\"Kassis, G.\",\"Palshikar, M. G\",\"Hilchey, S. P\",\"Zand, M. S\",\"Thakar, J.\"],\"key\":\"kassis2024discrete\",\"id\":\"kassis2024discrete\",\"bibbaseid\":\"kassis-palshikar-hilchey-zand-thakar-discretestatemodelsidentifypathwayspecificbcellstatesacrossdiseasesandinfectionsatsinglecellresolution-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Integrating spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Millard\"],\"firstnames\":[\"Nghia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Jonathan\",\"H\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pelka\"],\"firstnames\":[\"Karin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Spurrell\"],\"firstnames\":[\"Maxwell\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Price\"],\"firstnames\":[\"Colles\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"He\"],\"firstnames\":[\"Jiang\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hacohen\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Raychaudhuri\"],\"firstnames\":[\"Soumya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Korsunsky\"],\"firstnames\":[\"Ilya\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"pages\":\"2024–03\",\"year\":\"2024\",\"publisher\":\"Cold Spring Harbor Laboratory\",\"bibtex\":\"@article{millard2024integrating,\\n  title={Integrating spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},\\n  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},\\n  journal={bioRxiv},\\n  pages={2024--03},\\n  year={2024},\\n  publisher={Cold Spring Harbor Laboratory}\\n}\\n\\n\",\"author_short\":[\"Millard, N.\",\"Chen, J. H\",\"Palshikar, M. G\",\"Pelka, K.\",\"Spurrell, M.\",\"Price, C.\",\"He, J.\",\"Hacohen, N.\",\"Raychaudhuri, S.\",\"Korsunsky, I.\"],\"key\":\"millard2024integrating\",\"id\":\"millard2024integrating\",\"bibbaseid\":\"millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-integratingspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Spatial organization and cellular composition of immunity hubs in human colorectal cancer\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Spurrell\"],\"firstnames\":[\"Maxwell\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Demaray\"],\"firstnames\":[\"Jack\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Han\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Engels\"],\"firstnames\":[\"Scott\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Madhu\"],\"firstnames\":[\"Roopa\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Parikh\"],\"firstnames\":[\"Milan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gazmora\"],\"firstnames\":[\"Izabella\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mehta\"],\"firstnames\":[\"Arnav\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fernandez\"],\"firstnames\":[\"Nicolas\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Cancer Research\",\"volume\":\"84\",\"number\":\"6_Supplement\",\"pages\":\"5492–5492\",\"year\":\"2024\",\"publisher\":\"The American Association for Cancer Research\",\"bibtex\":\"@article{palshikar2024spatial,\\n  title={Spatial organization and cellular composition of immunity hubs in human colorectal cancer},\\n  author={Palshikar, Mukta G and Spurrell, Maxwell and Demaray, Jack and Chen, Han and Engels, Scott and Madhu, Roopa and Parikh, Milan and Gazmora, Izabella and Mehta, Arnav and Fernandez, Nicolas and others},\\n  journal={Cancer Research},\\n  volume={84},\\n  number={6\\\\_Supplement},\\n  pages={5492--5492},\\n  year={2024},\\n  publisher={The American Association for Cancer Research}\\n}\\n\\n\",\"author_short\":[\"Palshikar, M. G\",\"Spurrell, M.\",\"Demaray, J.\",\"Chen, H.\",\"Engels, S.\",\"Madhu, R.\",\"Parikh, M.\",\"Gazmora, I.\",\"Mehta, A.\",\"Fernandez, N.\",\"others\"],\"key\":\"palshikar2024spatial\",\"id\":\"palshikar2024spatial\",\"bibbaseid\":\"palshikar-spurrell-demaray-chen-engels-madhu-parikh-gazmora-etal-spatialorganizationandcellularcompositionofimmunityhubsinhumancolorectalcancer-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Powerful and accurate case-control analysis of spatial molecular data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Reshef\"],\"firstnames\":[\"Yakir\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sood\"],\"firstnames\":[\"Lakshay\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Curtis\"],\"firstnames\":[\"Michelle\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Rumker\"],\"firstnames\":[\"Laurie\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Stein\"],\"firstnames\":[\"Daniel\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Nayar\"],\"firstnames\":[\"Saba\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Filer\"],\"firstnames\":[\"Andrew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Jonsson\"],\"firstnames\":[\"Anna\",\"Helena\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Korsunsky\"],\"firstnames\":[\"Ilya\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"year\":\"2025\",\"bibtex\":\"@article{reshef2025powerful,\\n  title={Powerful and accurate case-control analysis of spatial molecular data},\\n  author={Reshef, Yakir and Sood, Lakshay and Curtis, Michelle and Rumker, Laurie and Stein, Daniel J and Palshikar, Mukta G and Nayar, Saba and Filer, Andrew and Jonsson, Anna Helena and Korsunsky, Ilya and others},\\n  journal={bioRxiv},\\n  year={2025}\\n}\\n\\n\",\"author_short\":[\"Reshef, Y.\",\"Sood, L.\",\"Curtis, M.\",\"Rumker, L.\",\"Stein, D. J\",\"Palshikar, M. G\",\"Nayar, S.\",\"Filer, A.\",\"Jonsson, A. H.\",\"Korsunsky, I.\",\"others\"],\"key\":\"reshef2025powerful\",\"id\":\"reshef2025powerful\",\"bibbaseid\":\"reshef-sood-curtis-rumker-stein-palshikar-nayar-filer-etal-powerfulandaccuratecasecontrolanalysisofspatialmoleculardata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Millard\"],\"firstnames\":[\"Nghia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Jonathan\",\"H\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Palshikar\"],\"firstnames\":[\"Mukta\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pelka\"],\"firstnames\":[\"Karin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Spurrell\"],\"firstnames\":[\"Maxwell\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Price\"],\"firstnames\":[\"Colles\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"He\"],\"firstnames\":[\"Jiang\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hacohen\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Raychaudhuri\"],\"firstnames\":[\"Soumya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Korsunsky\"],\"firstnames\":[\"Ilya\"],\"suffixes\":[]}],\"journal\":\"Genome biology\",\"volume\":\"26\",\"number\":\"1\",\"pages\":\"36\",\"year\":\"2025\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{millard2025batch,\\n  title={Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},\\n  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},\\n  journal={Genome biology},\\n  volume={26},\\n  number={1},\\n  pages={36},\\n  year={2025},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Millard, N.\",\"Chen, J. H\",\"Palshikar, M. G\",\"Pelka, K.\",\"Spurrell, M.\",\"Price, C.\",\"He, J.\",\"Hacohen, N.\",\"Raychaudhuri, S.\",\"Korsunsky, I.\"],\"key\":\"millard2025batch\",\"id\":\"millard2025batch\",\"bibbaseid\":\"millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-batchcorrectingsinglecellspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"OP0252 A MULTIMODAL DISSECTION OF SPATIAL TISSUE NICHES ASSOCIATED WITH SEVERITY IN CHILDHOOD ARTHRITIS\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Bolton\"],\"firstnames\":[\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mahony\"],\"firstnames\":[\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clay\"],\"firstnames\":[\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Nisa\"],\"firstnames\":[\"PI\",\"Reis\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lomholt\"],\"firstnames\":[\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hackland\"],\"firstnames\":[\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chin\"],\"firstnames\":[\"PS\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Smith\"],\"firstnames\":[\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Alexiou\"],\"firstnames\":[\"V\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Nguyen\"],\"firstnames\":[\"H\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Annals of the Rheumatic Diseases\",\"volume\":\"84\",\"pages\":\"207–208\",\"year\":\"2025\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{bolton2025op0252,\\n  title={OP0252 A MULTIMODAL DISSECTION OF SPATIAL TISSUE NICHES ASSOCIATED WITH SEVERITY IN CHILDHOOD ARTHRITIS},\\n  author={Bolton, C and Mahony, C and Clay, E and Nisa, PI Reis and Lomholt, S and Hackland, A and Chin, PS and Smith, C and Alexiou, V and Nguyen, H and others},\\n  journal={Annals of the Rheumatic Diseases},\\n  volume={84},\\n  pages={207--208},\\n  year={2025},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Bolton, C\",\"Mahony, C\",\"Clay, E\",\"Nisa, P. R.\",\"Lomholt, S\",\"Hackland, A\",\"Chin, P.\",\"Smith, C\",\"Alexiou, V\",\"Nguyen, H\",\"others\"],\"key\":\"bolton2025op0252\",\"id\":\"bolton2025op0252\",\"bibbaseid\":\"bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-op0252amultimodaldissectionofspatialtissuenichesassociatedwithseverityinchildhoodarthritis-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Synovial tissue atlas in juvenile idiopathic arthritis reveals pathogenic niches associated with disease severity\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Bolton\"],\"firstnames\":[\"Chrissy\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mahony\"],\"firstnames\":[\"Christopher\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clay\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Nisa\"],\"firstnames\":[\"Patricia\",\"Reis\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lomholt\"],\"firstnames\":[\"Søren\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hackland\"],\"firstnames\":[\"Annie\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chin\"],\"firstnames\":[\"Paulynn\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Smith\"],\"firstnames\":[\"Charlotte\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Alexiou\"],\"firstnames\":[\"Vicky\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Nguyen\"],\"firstnames\":[\"Huong\",\"D\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Science translational medicine\",\"volume\":\"17\",\"number\":\"805\",\"pages\":\"eadt6050\",\"year\":\"2025\",\"publisher\":\"American Association for the Advancement of Science\",\"bibtex\":\"@article{bolton2025synovial,\\n  title={Synovial tissue atlas in juvenile idiopathic arthritis reveals pathogenic niches associated with disease severity},\\n  author={Bolton, Chrissy and Mahony, Christopher B and Clay, Elizabeth and Nisa, Patricia Reis and Lomholt, S{\\\\o}ren and Hackland, Annie and Chin, Paulynn S and Smith, Charlotte G and Alexiou, Vicky and Nguyen, Huong D and others},\\n  journal={Science translational medicine},\\n  volume={17},\\n  number={805},\\n  pages={eadt6050},\\n  year={2025},\\n  publisher={American Association for the Advancement of Science}\\n}\\n\",\"author_short\":[\"Bolton, C.\",\"Mahony, C. B\",\"Clay, E.\",\"Nisa, P. R.\",\"Lomholt, S.\",\"Hackland, A.\",\"Chin, P. S\",\"Smith, C. G\",\"Alexiou, V.\",\"Nguyen, H. D\",\"others\"],\"key\":\"bolton2025synovial\",\"id\":\"bolton2025synovial\",\"bibbaseid\":\"bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-synovialtissueatlasinjuvenileidiopathicarthritisrevealspathogenicnichesassociatedwithdiseaseseverity-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"}],\n      metadata: {\"authorlinks\":{}},\n      ownerID: undefined\n    };\n  </script>\n\n  <script type=\"text/javascript\">\n  var site$;\n  if (typeof $ != 'undefined') {\n    console.log('existing jquery: storing and then restoring');\n    site$ = $;\n    $ = null;\n  }\n  </script>\n\n  <script src=\"https://ajax.googleapis.com/ajax/libs/jquery/2.2.4/jquery.min.js\">\n  </script>\n  <script type=\"text/javascript\">\n  if (site$) {\n    console.log('existing jquery: avoiding conflict and restoring');\n    bb$ = $.noConflict(true);\n    $ = site$;\n  } else {\n    bb$ = $;\n  }\n  </script>\n\n  <script src=\"//bibbase.org/js/bibbase.min.js\"\n          type=\"text/javascript\">\n  </script>\n\n  <script type=\"text/javascript\"\n          src=\"https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML\">\n  </script>\n  <script type=\"text/x-mathjax-config\">\n    MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\\\(','\\\\)']]},\n                        skipTags: [\"body\"],\n                        processClass: \"bibbase_paper\"});\n  </script>\n\n  <style>\n  @media print {\n    .dontprint {\n        display: none !important;\n    }\n\n  .bibbase_group {\n    background-color: #E0E0E0;\n    font-style: italic;\n    font-size: larger;\n    text-shadow: 0px 0px 3px #FFFFFF;\n    border-radius: 4px 4px 4px 4px;\n    -moz-border-radius: 4px 4px 4px 4px;\n    -webkit-border-radius: 4px;\n    padding: 5px 40px 5px;\n    margin-top: 10px;\n    margin-bottom: 5px;\n    cursor: pointer;\n  }\n\n  .bibbase_paper {\n    margin-bottom: 5px;\n  }\n\n  }\n  </style>\n\n  \n  <div style=\"float: right; margin-right: 10px; margin-top: 10px; text-align: right; font-size: 12px\">\n    generated by\n    <a href=\"//bibbase.org\"\n       onclick=\"trackOutboundLink('bibbase', 'logo clicked', window.location.href, '//bibbase.org'); return false;\">\n      <img src=\"//bibbase.org/img/logo.svg\"\n           style=\"vertical-align: middle; margin-left: 3px; height: 16px;\"/\n           alt=\"bibbase.org\"\n           title=\"BibBase – The easiest way to maintain your publications page.\"\n        ></a>\n    \n  </div>\n  \n\n  <div id=\"bibbase_header\" class=\"dontprint\" style=\"\">\n\n    <ul class=\"nav nav-pills\" style=\"margin: 0px;\">\n\n      <li class=\"dropdown\" id=\"groupby_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         aria-label=\"group-by menu toggle\"\n         href=\"#\">\n          Group by\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li class=\"groupby year\"><a onclick=\"groupby('year')\">\n            Year</a>\n        </li>\n        <li class=\"groupby author\"><a onclick=\"groupby('author_short')\">\n            Author</a>\n        </li>\n        <li class=\"groupby type\"><a onclick=\"groupby('type')\">\n            Type</a>\n        </li>\n        <li class=\"groupby keyword\"><a onclick=\"groupby('keyword')\">\n            Keyword</a>\n        </li>\n        <li class=\"groupby downloads\"><a onclick=\"groupby('downloads')\">\n            Downloads</a>\n        </li>\n      </ul>\n      </li>\n\n\n      <li class=\"dropdown\" id=\"menu_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         aria-label=\"other options menu toggle\"\n         href=\"#\" alt=\"controls\">\n          <i class=\"fa fa-reorder\" alt=\"controls\"></i>\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li>\n          <a onclick=\"toggleAll()\">\n            <i class=\"fa fa-chevron-down fa-fw\"></i> Expand/Collapse All\n          </a>\n        </li>\n        <li>\n          <a download=\"9BjPwg3giXHBfBM4K\" href=\"data:text/bibtex;base64,@article{hilchey2020cyclosporine,
  title={Cyclosporine A Directly Affects Human And Mouse B Cell Migration In Vitro By Disrupting A HIF-1A dependent, O2 Sensing, Molecular Switch},
  author={Hilchey, Shannon P and Palshikar, Mukta G and Emo, Jason A and Li, Dongmei and Garigen, Jessica and Wang, Jiong and Mendelson, Eric S and Cipolla, Valentina and Thakar, Juilee and Zand, Martin S},
  journal={BMC immunology},
  volume={21},
  number={1},
  pages={1--18},
  year={2020},
  publisher={BioMed Central}
}



@article{palli2019executable,
  title={Executable pathway analysis using ensemble discrete-state modeling for large-scale data},
  author={Palli, Rohith and Palshikar, Mukta G and Thakar, Juilee},
  journal={PLoS computational biology},
  volume={15},
  number={9},
  pages={e1007317},
  year={2019},
  publisher={Public Library of Science San Francisco, CA USA}
}



@article{suwunnakorn2020characterization,
  title={Characterization of platelet signature on monocytes isolated from HIV infected individuals},
  author={Suwunnakorn, Sumanun and Singh, Meera V and Singh, Vir B and Palshikar, Mukta and Thakar, Juilee and Weber, Emily A and Maggirwar, Sanjay B},
  journal={The Journal of Immunology},
  volume={204},
  number={1\_Supplement},
  pages={248--17},
  year={2020},
  publisher={Oxford University Press}
}



@article{palshikar2022wikinetworks,
  title={WikiNetworks: translating manually created biological pathways for topological analysis},
  author={Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},
  journal={Bioinformatics},
  volume={38},
  number={3},
  pages={869--871},
  year={2022},
  publisher={Oxford University Press}
}



@article{hilchey2022cyclosporine,
  title={Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels},
  author={Hilchey, Shannon P. and Palshikar, Mukta G. and Mendelson, Eric S. and Shen, Shichen and Rasam, Sailee and Emo, Jason A. and Qu, Jun and Thakar, Juilee and Zand, Martin S.},
  journal={Life},
  volume={12},
  number={8},
  pages={1284},
  year={2022},
  publisher={MDPI}
}



@article{palshikar2022executable,
  title={Executable models of immune signaling pathways in HIV-associated atherosclerosis},
  author={Palshikar, Mukta G. and Palli, Rohith and Tyrell, Alicia and Maggirwar, Sanjay and Schifitto, Giovanni and Singh, Meera V. and Thakar, Juilee},
  journal={npj Systems Biology and Applications},
  volume={8},
  number={1},
  pages={35},
  year={2022},
  publisher={Springer Nature}
}



@article{palshikar2023executable,
  title={Executable network models of integrated multiomics data},
  author={Palshikar, Mukta G and Min, Xiaojun and Crystal, Alexander and Meng, Jiayue and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},
  journal={Journal of Proteome Research},
  volume={22},
  number={5},
  pages={1546--1556},
  year={2023},
  publisher={American Chemical Society}
}



@phdthesis{palshikar2023executable,
  title={Executable Models of Signaling Pathways Built Using Omics Data},
  author={Palshikar, Mukta G},
  year={2023},
  school={University of Rochester}
}



@article{kassis2024discrete,
  title={Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution},
  author={Kassis, George and Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},
  journal={Journal of theoretical biology},
  volume={583},
  pages={111769},
  year={2024},
  publisher={Academic Press}
}



@article{millard2024integrating,
  title={Integrating spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},
  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},
  journal={bioRxiv},
  pages={2024--03},
  year={2024},
  publisher={Cold Spring Harbor Laboratory}
}



@article{palshikar2024spatial,
  title={Spatial organization and cellular composition of immunity hubs in human colorectal cancer},
  author={Palshikar, Mukta G and Spurrell, Maxwell and Demaray, Jack and Chen, Han and Engels, Scott and Madhu, Roopa and Parikh, Milan and Gazmora, Izabella and Mehta, Arnav and Fernandez, Nicolas and others},
  journal={Cancer Research},
  volume={84},
  number={6\_Supplement},
  pages={5492--5492},
  year={2024},
  publisher={The American Association for Cancer Research}
}



@article{reshef2025powerful,
  title={Powerful and accurate case-control analysis of spatial molecular data},
  author={Reshef, Yakir and Sood, Lakshay and Curtis, Michelle and Rumker, Laurie and Stein, Daniel J and Palshikar, Mukta G and Nayar, Saba and Filer, Andrew and Jonsson, Anna Helena and Korsunsky, Ilya and others},
  journal={bioRxiv},
  year={2025}
}



@article{millard2025batch,
  title={Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},
  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},
  journal={Genome biology},
  volume={26},
  number={1},
  pages={36},
  year={2025},
  publisher={BioMed Central London}
}



@article{bolton2025op0252,
  title={OP0252 A MULTIMODAL DISSECTION OF SPATIAL TISSUE NICHES ASSOCIATED WITH SEVERITY IN CHILDHOOD ARTHRITIS},
  author={Bolton, C and Mahony, C and Clay, E and Nisa, PI Reis and Lomholt, S and Hackland, A and Chin, PS and Smith, C and Alexiou, V and Nguyen, H and others},
  journal={Annals of the Rheumatic Diseases},
  volume={84},
  pages={207--208},
  year={2025},
  publisher={Elsevier}
}



@article{bolton2025synovial,
  title={Synovial tissue atlas in juvenile idiopathic arthritis reveals pathogenic niches associated with disease severity},
  author={Bolton, Chrissy and Mahony, Christopher B and Clay, Elizabeth and Nisa, Patricia Reis and Lomholt, S{\o}ren and Hackland, Annie and Chin, Paulynn S and Smith, Charlotte G and Alexiou, Vicky and Nguyen, Huong D and others},
  journal={Science translational medicine},
  volume={17},
  number={805},
  pages={eadt6050},
  year={2025},
  publisher={American Association for the Advancement of Science}
}
\">\n            <i class=\"fa fa-download fa-fw\"></i> Download BibTeX\n          </a>\n        </li>\n        <li>\n          <a href=\"//bibbase.org/rss?bib=https://bibbase.org/network/files/9BjPwg3giXHBfBM4K\">\n            <i class=\"fa fa-rss fa-fw\"></i> RSS Feed\n          </a>\n          </li>\n      </ul>\n      </li>\n\n      \n\n\n      \n    </ul>\n\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_embed\"\n         style=\"display: none;\">\n\n      Excellent! Next you can\n      <a href=\"/network/register?next=/network/newSiteFromTemplate%3Fbiburl=https://bibbase.org/network/files/9BjPwg3giXHBfBM4K\"\n      >create a new website with this list</a>, or\n      embed it in an existing web page by copying &amp; pasting\n      any of the following snippets.\n\n      <div style=\"text-align: left; margin-top: 1em;\">\n        <strong>JavaScript</strong>\n        <span class=\"comment recommended\">(easiest)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;script src=\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2F9BjPwg3giXHBfBM4K&amp;jsonp=1&amp;noBootstrap=1&amp;jsonp=1\"&gt;&lt;/script&gt;\n          </code>\n        </div>\n\n        <strong>PHP</strong>\n        <div class=\"well well-small\">\n          <code>\n            &lt;?php\n            $contents = file_get_contents(\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2F9BjPwg3giXHBfBM4K&amp;jsonp=1&amp;noBootstrap=1\");\n            print_r($contents);\n            ?&gt;\n          </code>\n        </div>\n\n        <strong>iFrame</strong>\n        <span class=\"comment\">(not recommended)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;iframe src=\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2F9BjPwg3giXHBfBM4K&amp;jsonp=1&amp;noBootstrap=1\"&gt;&lt;/iframe&gt;\n          </code>\n        </div>\n\n        <p>\n          For more details see the <a href=\"//bibbase.org/help\">documention</a>.\n        </p>\n      </div>\n    </div>\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_preview\"\n         style=\"display: none;\">\n\n      This is a preview! To use this list on your own web site\n      or create a new web site from it,\n      <a href=\"/network/register?next=/network/newAccountWithFile%3FfileId=\"\n      >create a free account</a>. The file will be added\n      and you will be able to edit it in the File Manager.\n      We will show you instructions once you've created your account.\n    </div>\n\n    <div class=\"alert alert-warning bibbase_msg\" id=\"bibbase_msg_mendeley1\"\n         style=\"display: none;\">\n\n      <p>To the site owner:</p>\n\n      <p><strong>Action required!</strong> Mendeley is changing its\n        API. In order to keep using Mendeley with BibBase past April\n        14th, you need to:\n        <ol>\n          <li>renew the authorization for BibBase on Mendeley, and</li>\n          <li>update the BibBase URL\n            in your page the same way you did when you initially set up\n            this page.\n          </li>\n        </ol>\n      </p>\n\n      <p>\n        <a href=\"http://bibbase.org/cgi-bin/mendeley2/get.py\">\n          <i class=\"fa fa-angle-double-right\"></i>\n          Fix it now</a>\n      </p>\n    </div>\n\n  </div>\n\n\n  <div id=\"bibbase_body\">\n    \n  \n  <div class=\"bibbase_group_whole\" id=\"group_2025\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2025')\"\n      onkeypress=\"toggleGroup('group_2025')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2025</span>\n      <span class=\"bibbase_group_count\">\n        \n        (4)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"reshef-sood-curtis-rumker-stein-palshikar-nayar-filer-etal-powerfulandaccuratecasecontrolanalysisofspatialmoleculardata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Powerful and accurate case-control analysis of spatial molecular data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Reshef, Y.; Sood, L.; Curtis, M.; Rumker, L.; Stein, D. J; Palshikar, M. G; Nayar, S.; Filer, A.; Jonsson, A. H.; Korsunsky, I.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/reshef-sood-curtis-rumker-stein-palshikar-nayar-filer-etal-powerfulandaccuratecasecontrolanalysisofspatialmoleculardata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('reshef-sood-curtis-rumker-stein-palshikar-nayar-filer-etal-powerfulandaccuratecasecontrolanalysisofspatialmoleculardata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{reshef2025powerful,\n  title={Powerful and accurate case-control analysis of spatial molecular data},\n  author={Reshef, Yakir and Sood, Lakshay and Curtis, Michelle and Rumker, Laurie and Stein, Daniel J and Palshikar, Mukta G and Nayar, Saba and Filer, Andrew and Jonsson, Anna Helena and Korsunsky, Ilya and others},\n  journal={bioRxiv},\n  year={2025}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-batchcorrectingsinglecellspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Millard, N.; Chen, J. H; Palshikar, M. G; Pelka, K.; Spurrell, M.; Price, C.; He, J.; Hacohen, N.; Raychaudhuri, S.;  and Korsunsky, I.\n</span>\n\n  \n\n</span>\n\n  <i>Genome biology</i>, 26(1): 36.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-batchcorrectingsinglecellspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-batchcorrectingsinglecellspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{millard2025batch,\n  title={Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},\n  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},\n  journal={Genome biology},\n  volume={26},\n  number={1},\n  pages={36},\n  year={2025},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-op0252amultimodaldissectionofspatialtissuenichesassociatedwithseverityinchildhoodarthritis-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  OP0252 A MULTIMODAL DISSECTION OF SPATIAL TISSUE NICHES ASSOCIATED WITH SEVERITY IN CHILDHOOD ARTHRITIS.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Bolton, C; Mahony, C; Clay, E; Nisa, P. R.; Lomholt, S; Hackland, A; Chin, P.; Smith, C; Alexiou, V; Nguyen, H;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Annals of the Rheumatic Diseases</i>, 84: 207–208.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-op0252amultimodaldissectionofspatialtissuenichesassociatedwithseverityinchildhoodarthritis-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-op0252amultimodaldissectionofspatialtissuenichesassociatedwithseverityinchildhoodarthritis-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{bolton2025op0252,\n  title={OP0252 A MULTIMODAL DISSECTION OF SPATIAL TISSUE NICHES ASSOCIATED WITH SEVERITY IN CHILDHOOD ARTHRITIS},\n  author={Bolton, C and Mahony, C and Clay, E and Nisa, PI Reis and Lomholt, S and Hackland, A and Chin, PS and Smith, C and Alexiou, V and Nguyen, H and others},\n  journal={Annals of the Rheumatic Diseases},\n  volume={84},\n  pages={207--208},\n  year={2025},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-synovialtissueatlasinjuvenileidiopathicarthritisrevealspathogenicnichesassociatedwithdiseaseseverity-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Synovial tissue atlas in juvenile idiopathic arthritis reveals pathogenic niches associated with disease severity.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Bolton, C.; Mahony, C. B; Clay, E.; Nisa, P. R.; Lomholt, S.; Hackland, A.; Chin, P. S; Smith, C. G; Alexiou, V.; Nguyen, H. D;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Science translational medicine</i>, 17(805): eadt6050.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-synovialtissueatlasinjuvenileidiopathicarthritisrevealspathogenicnichesassociatedwithdiseaseseverity-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('bolton-mahony-clay-nisa-lomholt-hackland-chin-smith-etal-synovialtissueatlasinjuvenileidiopathicarthritisrevealspathogenicnichesassociatedwithdiseaseseverity-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{bolton2025synovial,\n  title={Synovial tissue atlas in juvenile idiopathic arthritis reveals pathogenic niches associated with disease severity},\n  author={Bolton, Chrissy and Mahony, Christopher B and Clay, Elizabeth and Nisa, Patricia Reis and Lomholt, S{\\o}ren and Hackland, Annie and Chin, Paulynn S and Smith, Charlotte G and Alexiou, Vicky and Nguyen, Huong D and others},\n  journal={Science translational medicine},\n  volume={17},\n  number={805},\n  pages={eadt6050},\n  year={2025},\n  publisher={American Association for the Advancement of Science}\n}\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2024\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2024')\"\n      onkeypress=\"toggleGroup('group_2024')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2024</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"kassis-palshikar-hilchey-zand-thakar-discretestatemodelsidentifypathwayspecificbcellstatesacrossdiseasesandinfectionsatsinglecellresolution-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Kassis, G.; Palshikar, M. G; Hilchey, S. P; Zand, M. S;  and Thakar, J.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of theoretical biology</i>, 583: 111769.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/kassis-palshikar-hilchey-zand-thakar-discretestatemodelsidentifypathwayspecificbcellstatesacrossdiseasesandinfectionsatsinglecellresolution-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('kassis-palshikar-hilchey-zand-thakar-discretestatemodelsidentifypathwayspecificbcellstatesacrossdiseasesandinfectionsatsinglecellresolution-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{kassis2024discrete,\n  title={Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution},\n  author={Kassis, George and Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\n  journal={Journal of theoretical biology},\n  volume={583},\n  pages={111769},\n  year={2024},\n  publisher={Academic Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-integratingspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Integrating spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Millard, N.; Chen, J. H; Palshikar, M. G; Pelka, K.; Spurrell, M.; Price, C.; He, J.; Hacohen, N.; Raychaudhuri, S.;  and Korsunsky, I.\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>,2024–03.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-integratingspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('millard-chen-palshikar-pelka-spurrell-price-he-hacohen-etal-integratingspatialtranscriptomicscountdatawithcrescendoimprovesvisualizationanddetectionofspatialgenepatterns-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{millard2024integrating,\n  title={Integrating spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns},\n  author={Millard, Nghia and Chen, Jonathan H and Palshikar, Mukta G and Pelka, Karin and Spurrell, Maxwell and Price, Colles and He, Jiang and Hacohen, Nir and Raychaudhuri, Soumya and Korsunsky, Ilya},\n  journal={bioRxiv},\n  pages={2024--03},\n  year={2024},\n  publisher={Cold Spring Harbor Laboratory}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"palshikar-spurrell-demaray-chen-engels-madhu-parikh-gazmora-etal-spatialorganizationandcellularcompositionofimmunityhubsinhumancolorectalcancer-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Spatial organization and cellular composition of immunity hubs in human colorectal cancer.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palshikar, M. G; Spurrell, M.; Demaray, J.; Chen, H.; Engels, S.; Madhu, R.; Parikh, M.; Gazmora, I.; Mehta, A.; Fernandez, N.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Cancer Research</i>, 84(6_Supplement): 5492–5492.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palshikar-spurrell-demaray-chen-engels-madhu-parikh-gazmora-etal-spatialorganizationandcellularcompositionofimmunityhubsinhumancolorectalcancer-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palshikar-spurrell-demaray-chen-engels-madhu-parikh-gazmora-etal-spatialorganizationandcellularcompositionofimmunityhubsinhumancolorectalcancer-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{palshikar2024spatial,\n  title={Spatial organization and cellular composition of immunity hubs in human colorectal cancer},\n  author={Palshikar, Mukta G and Spurrell, Maxwell and Demaray, Jack and Chen, Han and Engels, Scott and Madhu, Roopa and Parikh, Milan and Gazmora, Izabella and Mehta, Arnav and Fernandez, Nicolas and others},\n  journal={Cancer Research},\n  volume={84},\n  number={6\\_Supplement},\n  pages={5492--5492},\n  year={2024},\n  publisher={The American Association for Cancer Research}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2023\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2023')\"\n      onkeypress=\"toggleGroup('group_2023')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2023</span>\n      <span class=\"bibbase_group_count\">\n        \n        (2)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"palshikar-min-crystal-meng-hilchey-zand-thakar-executablenetworkmodelsofintegratedmultiomicsdata-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Executable network models of integrated multiomics data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palshikar, M. G; Min, X.; Crystal, A.; Meng, J.; Hilchey, S. P; Zand, M. S;  and Thakar, J.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Proteome Research</i>, 22(5): 1546–1556.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palshikar-min-crystal-meng-hilchey-zand-thakar-executablenetworkmodelsofintegratedmultiomicsdata-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palshikar-min-crystal-meng-hilchey-zand-thakar-executablenetworkmodelsofintegratedmultiomicsdata-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{palshikar2023executable,\n  title={Executable network models of integrated multiomics data},\n  author={Palshikar, Mukta G and Min, Xiaojun and Crystal, Alexander and Meng, Jiayue and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\n  journal={Journal of Proteome Research},\n  volume={22},\n  number={5},\n  pages={1546--1556},\n  year={2023},\n  publisher={American Chemical Society}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"palshikar-executablemodelsofsignalingpathwaysbuiltusingomicsdata-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Executable Models of Signaling Pathways Built Using Omics Data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palshikar, M. G\n</span>\n\n  \n\n</span>\n\n  Ph.D. Thesis, University of Rochester,  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palshikar-executablemodelsofsignalingpathwaysbuiltusingomicsdata-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palshikar-executablemodelsofsignalingpathwaysbuiltusingomicsdata-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@phdthesis{palshikar2023executable,\n  title={Executable Models of Signaling Pathways Built Using Omics Data},\n  author={Palshikar, Mukta G},\n  year={2023},\n  school={University of Rochester}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2022\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2022')\"\n      onkeypress=\"toggleGroup('group_2022')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2022</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"palshikar-hilchey-zand-thakar-wikinetworkstranslatingmanuallycreatedbiologicalpathwaysfortopologicalanalysis-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  WikiNetworks: translating manually created biological pathways for topological analysis.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palshikar, M. G; Hilchey, S. P; Zand, M. S;  and Thakar, J.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 38(3): 869–871.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palshikar-hilchey-zand-thakar-wikinetworkstranslatingmanuallycreatedbiologicalpathwaysfortopologicalanalysis-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palshikar-hilchey-zand-thakar-wikinetworkstranslatingmanuallycreatedbiologicalpathwaysfortopologicalanalysis-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{palshikar2022wikinetworks,\n  title={WikiNetworks: translating manually created biological pathways for topological analysis},\n  author={Palshikar, Mukta G and Hilchey, Shannon P and Zand, Martin S and Thakar, Juilee},\n  journal={Bioinformatics},\n  volume={38},\n  number={3},\n  pages={869--871},\n  year={2022},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hilchey-palshikar-mendelson-shen-rasam-emo-qu-thakar-etal-cyclosporineamodulateslsp1proteinlevelsinhumanbcellstoattenuatebcellmigrationatlowo2levels-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hilchey, S. P.; Palshikar, M. G.; Mendelson, E. S.; Shen, S.; Rasam, S.; Emo, J. A.; Qu, J.; Thakar, J.;  and Zand, M. S.\n</span>\n\n  \n\n</span>\n\n  <i>Life</i>, 12(8): 1284.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hilchey-palshikar-mendelson-shen-rasam-emo-qu-thakar-etal-cyclosporineamodulateslsp1proteinlevelsinhumanbcellstoattenuatebcellmigrationatlowo2levels-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hilchey-palshikar-mendelson-shen-rasam-emo-qu-thakar-etal-cyclosporineamodulateslsp1proteinlevelsinhumanbcellstoattenuatebcellmigrationatlowo2levels-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{hilchey2022cyclosporine,\n  title={Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels},\n  author={Hilchey, Shannon P. and Palshikar, Mukta G. and Mendelson, Eric S. and Shen, Shichen and Rasam, Sailee and Emo, Jason A. and Qu, Jun and Thakar, Juilee and Zand, Martin S.},\n  journal={Life},\n  volume={12},\n  number={8},\n  pages={1284},\n  year={2022},\n  publisher={MDPI}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"palshikar-palli-tyrell-maggirwar-schifitto-singh-thakar-executablemodelsofimmunesignalingpathwaysinhivassociatedatherosclerosis-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Executable models of immune signaling pathways in HIV-associated atherosclerosis.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palshikar, M. G.; Palli, R.; Tyrell, A.; Maggirwar, S.; Schifitto, G.; Singh, M. V.;  and Thakar, J.\n</span>\n\n  \n\n</span>\n\n  <i>npj Systems Biology and Applications</i>, 8(1): 35.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palshikar-palli-tyrell-maggirwar-schifitto-singh-thakar-executablemodelsofimmunesignalingpathwaysinhivassociatedatherosclerosis-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palshikar-palli-tyrell-maggirwar-schifitto-singh-thakar-executablemodelsofimmunesignalingpathwaysinhivassociatedatherosclerosis-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{palshikar2022executable,\n  title={Executable models of immune signaling pathways in HIV-associated atherosclerosis},\n  author={Palshikar, Mukta G. and Palli, Rohith and Tyrell, Alicia and Maggirwar, Sanjay and Schifitto, Giovanni and Singh, Meera V. and Thakar, Juilee},\n  journal={npj Systems Biology and Applications},\n  volume={8},\n  number={1},\n  pages={35},\n  year={2022},\n  publisher={Springer Nature}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2020\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2020')\"\n      onkeypress=\"toggleGroup('group_2020')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2020</span>\n      <span class=\"bibbase_group_count\">\n        \n        (2)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"hilchey-palshikar-emo-li-garigen-wang-mendelson-cipolla-etal-cyclosporineadirectlyaffectshumanandmousebcellmigrationinvitrobydisruptingahif1adependento2sensingmolecularswitch-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Cyclosporine A Directly Affects Human And Mouse B Cell Migration In Vitro By Disrupting A HIF-1A dependent, O2 Sensing, Molecular Switch.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hilchey, S. P; Palshikar, M. G; Emo, J. A; Li, D.; Garigen, J.; Wang, J.; Mendelson, E. S; Cipolla, V.; Thakar, J.;  and Zand, M. S\n</span>\n\n  \n\n</span>\n\n  <i>BMC immunology</i>, 21(1): 1–18.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hilchey-palshikar-emo-li-garigen-wang-mendelson-cipolla-etal-cyclosporineadirectlyaffectshumanandmousebcellmigrationinvitrobydisruptingahif1adependento2sensingmolecularswitch-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hilchey-palshikar-emo-li-garigen-wang-mendelson-cipolla-etal-cyclosporineadirectlyaffectshumanandmousebcellmigrationinvitrobydisruptingahif1adependento2sensingmolecularswitch-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{hilchey2020cyclosporine,\n  title={Cyclosporine A Directly Affects Human And Mouse B Cell Migration In Vitro By Disrupting A HIF-1A dependent, O2 Sensing, Molecular Switch},\n  author={Hilchey, Shannon P and Palshikar, Mukta G and Emo, Jason A and Li, Dongmei and Garigen, Jessica and Wang, Jiong and Mendelson, Eric S and Cipolla, Valentina and Thakar, Juilee and Zand, Martin S},\n  journal={BMC immunology},\n  volume={21},\n  number={1},\n  pages={1--18},\n  year={2020},\n  publisher={BioMed Central}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"suwunnakorn-singh-singh-palshikar-thakar-weber-maggirwar-characterizationofplateletsignatureonmonocytesisolatedfromhivinfectedindividuals-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Characterization of platelet signature on monocytes isolated from HIV infected individuals.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Suwunnakorn, S.; Singh, M. V; Singh, V. B; Palshikar, M.; Thakar, J.; Weber, E. A;  and Maggirwar, S. B\n</span>\n\n  \n\n</span>\n\n  <i>The Journal of Immunology</i>, 204(1_Supplement): 248–17.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/suwunnakorn-singh-singh-palshikar-thakar-weber-maggirwar-characterizationofplateletsignatureonmonocytesisolatedfromhivinfectedindividuals-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('suwunnakorn-singh-singh-palshikar-thakar-weber-maggirwar-characterizationofplateletsignatureonmonocytesisolatedfromhivinfectedindividuals-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{suwunnakorn2020characterization,\n  title={Characterization of platelet signature on monocytes isolated from HIV infected individuals},\n  author={Suwunnakorn, Sumanun and Singh, Meera V and Singh, Vir B and Palshikar, Mukta and Thakar, Juilee and Weber, Emily A and Maggirwar, Sanjay B},\n  journal={The Journal of Immunology},\n  volume={204},\n  number={1\\_Supplement},\n  pages={248--17},\n  year={2020},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2019\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2019')\"\n      onkeypress=\"toggleGroup('group_2019')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2019</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"palli-palshikar-thakar-executablepathwayanalysisusingensemblediscretestatemodelingforlargescaledata-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Executable pathway analysis using ensemble discrete-state modeling for large-scale data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Palli, R.; Palshikar, M. G;  and Thakar, J.\n</span>\n\n  \n\n</span>\n\n  <i>PLoS computational biology</i>, 15(9): e1007317.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/palli-palshikar-thakar-executablepathwayanalysisusingensemblediscretestatemodelingforlargescaledata-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('palli-palshikar-thakar-executablepathwayanalysisusingensemblediscretestatemodelingforlargescaledata-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{palli2019executable,\n  title={Executable pathway analysis using ensemble discrete-state modeling for large-scale data},\n  author={Palli, Rohith and Palshikar, Mukta G and Thakar, Juilee},\n  journal={PLoS computational biology},\n  volume={15},\n  number={9},\n  pages={e1007317},\n  year={2019},\n  publisher={Public Library of Science San Francisco, CA USA}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n\n\n\n  </div>\n\n\n  <!-- Modal -->\n\n  <!-- <iframe id=\"bibbase_network_frame\" -->\n  <!--         src=\"//bibbase.org/network/control\" -->\n  <!--         style=\"display: none;\"> -->\n  <!-- </iframe> -->\n\n</div>\n"}; document.write(bibbase_data.data);