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\n  \n 2024\n \n \n (5)\n \n \n
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\n \n\n \n \n \n \n \n Structural disorder by octahedral tilting in inorganic halide perovskites: New insight with Bayesian optimization.\n \n \n \n\n\n \n Li, J.; Pan, F.; Zhang, G.; Liu, Z.; Dong, H.; Wang, D.; Jiang, Z.; Ren, W.; Ye, Z.; Todorović, M.; and others\n\n\n \n\n\n\n Small Structures,2400268. 2024.\n \n\n\n\n
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@article{li2024structural,\n  title={Structural disorder by octahedral tilting in inorganic halide perovskites: New insight with Bayesian optimization},\n  author={Li, Jingrui and Pan, Fang and Zhang, Guo-Xu and Liu, Zenghui and Dong, Hua and Wang, Dawei and Jiang, Zhuangde and Ren, Wei and Ye, Zuo-Guang and Todorovi{\\'c}, Milica and others},\n  journal={Small Structures},\n  pages={2400268},\n  year={2024}\n}\n\n
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\n \n\n \n \n \n \n \n The search for sparse data in molecular datasets: Application of active learning to identify extremely low volatile organic compounds.\n \n \n \n\n\n \n Besel, V.; Todorović, M.; Kurtén, T.; Vehkamäki, H.; and Rinke, P.\n\n\n \n\n\n\n Journal of Aerosol Science, 179: 106375. 2024.\n \n\n\n\n
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@article{besel2024search,\n  title={The search for sparse data in molecular datasets: Application of active learning to identify extremely low volatile organic compounds},\n  author={Besel, Vitus and Todorovi{\\'c}, Milica and Kurt{\\'e}n, Theo and Vehkam{\\"a}ki, Hanna and Rinke, Patrick},\n  journal={Journal of Aerosol Science},\n  volume={179},\n  pages={106375},\n  year={2024},\n  publisher={Pergamon}\n}\n\n
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\n \n\n \n \n \n \n \n Question Answering models for information extraction from perovskite materials science literature.\n \n \n \n\n\n \n Sipilä, M; Mehryary, F; Pyysalo, S; Ginter, F; and Todorović, M.\n\n\n \n\n\n\n arXiv preprint arXiv:2405.15290. 2024.\n \n\n\n\n
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@article{sipila2024question,\n  title={Question Answering models for information extraction from perovskite materials science literature},\n  author={Sipil{\\"a}, M and Mehryary, F and Pyysalo, S and Ginter, F and Todorovi{\\'c}, Milica},\n  journal={arXiv preprint arXiv:2405.15290},\n  year={2024}\n}\n\n
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\n \n\n \n \n \n \n \n Active Learning of Molecular Data for Task-Specific Objectives.\n \n \n \n\n\n \n Ghosh, K.; Todorović, M.; Vehtari, A.; and Rinke, P.\n\n\n \n\n\n\n arXiv preprint arXiv:2408.11191. 2024.\n \n\n\n\n
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@article{ghosh2024active,\n  title={Active Learning of Molecular Data for Task-Specific Objectives},\n  author={Ghosh, Kunal and Todorovi{\\'c}, Milica and Vehtari, Aki and Rinke, Patrick},\n  journal={arXiv preprint arXiv:2408.11191},\n  year={2024}\n}\n\n
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\n \n\n \n \n \n \n \n First-Principles Structure Search Study of 17-$β$-Estradiol Adsorption on Graphene.\n \n \n \n\n\n \n Sippola, S.; Todorović, M.; and Peltola, E.\n\n\n \n\n\n\n ACS omega. 2024.\n \n\n\n\n
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@article{sippola2024first,\n  title={First-Principles Structure Search Study of 17-$\\beta$-Estradiol Adsorption on Graphene},\n  author={Sippola, Saara and Todorovi{\\'c}, Milica and Peltola, Emilia},\n  journal={ACS omega},\n  year={2024},\n  publisher={ACS Publications}\n}\n\n
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\n  \n 2023\n \n \n (6)\n \n \n
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\n \n\n \n \n \n \n \n Augmenting Bayesian Optimization with Preference-based Expert Feedback.\n \n \n \n\n\n \n Huang, D.; Filstroff, L.; Mikkola, P.; Zheng, R.; Todorovic, M.; and Kaski, S.\n\n\n \n\n\n\n In ICML 2023 Workshop The Many Facets of Preference-Based Learning, 2023. \n \n\n\n\n
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@inproceedings{huang2023augmenting,\n  title={Augmenting Bayesian Optimization with Preference-based Expert Feedback},\n  author={Huang, Daolang and Filstroff, Louis and Mikkola, Petrus and Zheng, Runkai and Todorovic, Milica and Kaski, Samuel},\n  booktitle={ICML 2023 Workshop The Many Facets of Preference-Based Learning},\n  year={2023}\n}\n\n
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\n \n\n \n \n \n \n \n Comparing methods for the long-term performance assessment of bifacial photovoltaic modules in Nordic conditions.\n \n \n \n\n\n \n Karttunen, L.; Jouttijärvi, S.; Poskela, A.; Palonen, H.; Huerta, H.; Todorović, M.; Ranta, S.; and Miettunen, K.\n\n\n \n\n\n\n Renewable Energy, 219: 119473. 2023.\n \n\n\n\n
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@article{karttunen2023comparing,\n  title={Comparing methods for the long-term performance assessment of bifacial photovoltaic modules in Nordic conditions},\n  author={Karttunen, Lauri and Jouttij{\\"a}rvi, Sami and Poskela, Aapo and Palonen, Heikki and Huerta, Hugo and Todorovi{\\'c}, Milica and Ranta, Samuli and Miettunen, Kati},\n  journal={Renewable Energy},\n  volume={219},\n  pages={119473},\n  year={2023},\n  publisher={Pergamon}\n}\n\n
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\n \n\n \n \n \n \n \n Optimization of high-temperature superconducting multilayer films using artificial intelligence.\n \n \n \n\n\n \n Rivasto, E.; Todorović, M.; Huhtinen, H.; and Paturi, P.\n\n\n \n\n\n\n New Journal of Physics, 25(11): 113046. 2023.\n \n\n\n\n
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@article{rivasto2023optimization,\n  title={Optimization of high-temperature superconducting multilayer films using artificial intelligence},\n  author={Rivasto, Elmeri and Todorovi{\\'c}, Milica and Huhtinen, Hannu and Paturi, Petriina},\n  journal={New Journal of Physics},\n  volume={25},\n  number={11},\n  pages={113046},\n  year={2023},\n  publisher={IOP Publishing}\n}\n\n
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\n \n\n \n \n \n \n \n Atomic structures, conformers and thermodynamic properties of 32k atmospheric molecules.\n \n \n \n\n\n \n Besel, V.; Todorović, M.; Kurtén, T.; Rinke, P.; and Vehkamäki, H.\n\n\n \n\n\n\n Scientific Data, 10(1): 450. 2023.\n \n\n\n\n
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@article{besel2023atomic,\n  title={Atomic structures, conformers and thermodynamic properties of 32k atmospheric molecules},\n  author={Besel, Vitus and Todorovi{\\'c}, Milica and Kurt{\\'e}n, Theo and Rinke, Patrick and Vehkam{\\"a}ki, Hanna},\n  journal={Scientific Data},\n  volume={10},\n  number={1},\n  pages={450},\n  year={2023},\n  publisher={Nature Publishing Group UK London}\n}\n\n
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\n \n\n \n \n \n \n \n Exploring the Conformers of an Organic Molecule on a Metal Cluster with Bayesian Optimization.\n \n \n \n\n\n \n Fang, L.; Guo, X.; Todorovic, M.; Rinke, P.; and Chen, X.\n\n\n \n\n\n\n Journal of Chemical Information and Modeling, 63(3): 745–752. 2023.\n \n\n\n\n
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@article{fang2023exploring,\n  title={Exploring the Conformers of an Organic Molecule on a Metal Cluster with Bayesian Optimization},\n  author={Fang, Lincan and Guo, Xiaomi and Todorovic, Milica and Rinke, Patrick and Chen, Xi},\n  journal={Journal of Chemical Information and Modeling},\n  volume={63},\n  number={3},\n  pages={745--752},\n  year={2023},\n  publisher={American Chemical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Updates to the DScribe library: New descriptors and derivatives.\n \n \n \n\n\n \n Laakso, J.; Himanen, L.; Homm, H.; Morooka, E. V; Jäger, M. O.; Todorović, M.; and Rinke, P.\n\n\n \n\n\n\n The Journal of Chemical Physics, 158(23). 2023.\n \n\n\n\n
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@article{laakso2023updates,\n  title={Updates to the DScribe library: New descriptors and derivatives},\n  author={Laakso, Jarno and Himanen, Lauri and Homm, Henrietta and Morooka, Eiaki V and J{\\"a}ger, Marc OJ and Todorovi{\\'c}, Milica and Rinke, Patrick},\n  journal={The Journal of Chemical Physics},\n  volume={158},\n  number={23},\n  year={2023},\n  publisher={AIP Publishing}\n}\n\n
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\n  \n 2022\n \n \n (9)\n \n \n
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\n \n\n \n \n \n \n \n Machine learning as a tool to engineer microstructures: Morphological prediction of tannin-based colloids using Bayesian surrogate models.\n \n \n \n\n\n \n Jin, S.; Kämäräinen, T.; Rinke, P.; Rojas, O. J; and Todorović, M.\n\n\n \n\n\n\n MRS bulletin, 47(1): 29–37. 2022.\n \n\n\n\n
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@article{jin2022machine,\n  title={Machine learning as a tool to engineer microstructures: Morphological prediction of tannin-based colloids using Bayesian surrogate models},\n  author={Jin, Soo-Ah and K{\\"a}m{\\"a}r{\\"a}inen, Tero and Rinke, Patrick and Rojas, Orlando J and Todorovi{\\'c}, Milica},\n  journal={MRS bulletin},\n  volume={47},\n  number={1},\n  pages={29--37},\n  year={2022},\n  publisher={Springer International Publishing}\n}\n\n
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\n \n\n \n \n \n \n \n Protective Coating Interfaces for Perovskite Solar Cell Materials: A First-Principles Study.\n \n \n \n\n\n \n Fangnon, A.; Dvorak, M.; Havu, V.; Todorović, M.; Li, J.; and Rinke, P.\n\n\n \n\n\n\n ACS Applied Materials & Interfaces, 14(10): 12758–12765. 2022.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{fangnon2022protective,\n  title={Protective Coating Interfaces for Perovskite Solar Cell Materials: A First-Principles Study},\n  author={Fangnon, Azimatu and Dvorak, Marc and Havu, Ville and Todorovi{\\'c}, Milica and Li, Jingrui and Rinke, Patrick},\n  journal={ACS Applied Materials \\& Interfaces},\n  volume={14},\n  number={10},\n  pages={12758--12765},\n  year={2022},\n  publisher={American Chemical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Roadmap on machine learning in electronic structure.\n \n \n \n\n\n \n Kulik, H.; Hammerschmidt, T.; Schmidt, J.; Botti, S.; Marques, M.; Boley, M.; Scheffler, M.; Todorović, M.; Rinke, P.; Oses, C.; and others\n\n\n \n\n\n\n Electronic Structure, 4(2): 023004. 2022.\n \n\n\n\n
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@article{kulik2022roadmap,\n  title={Roadmap on machine learning in electronic structure},\n  author={Kulik, HJ and Hammerschmidt, Thomas and Schmidt, Jonathan and Botti, Silvana and Marques, MAL and Boley, Mario and Scheffler, Matthias and Todorovi{\\'c}, Milica and Rinke, Patrick and Oses, Corey and others},\n  journal={Electronic Structure},\n  volume={4},\n  number={2},\n  pages={023004},\n  year={2022},\n  publisher={IOP Publishing}\n}\n\n
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\n \n\n \n \n \n \n \n Molecular conformer search with low-energy latent space.\n \n \n \n\n\n \n Guo, X.; Fang, L.; Xu, Y.; Duan, W.; Rinke, P.; Todorović, M.; and Chen, X.\n\n\n \n\n\n\n Journal of chemical theory and computation, 18(7): 4574–4585. 2022.\n \n\n\n\n
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@article{guo2022molecular,\n  title={Molecular conformer search with low-energy latent space},\n  author={Guo, Xiaomi and Fang, Lincan and Xu, Yong and Duan, Wenhui and Rinke, Patrick and Todorovi{\\'c}, Milica and Chen, Xi},\n  journal={Journal of chemical theory and computation},\n  volume={18},\n  number={7},\n  pages={4574--4585},\n  year={2022},\n  publisher={American Chemical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Machine learning sparse tight-binding parameters for defects.\n \n \n \n\n\n \n Schattauer, C.; Todorović, M.; Ghosh, K.; Rinke, P.; and Libisch, F.\n\n\n \n\n\n\n npj Computational Materials, 8(1): 116. 2022.\n \n\n\n\n
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@article{schattauer2022machine,\n  title={Machine learning sparse tight-binding parameters for defects},\n  author={Schattauer, Christoph and Todorovi{\\'c}, Milica and Ghosh, Kunal and Rinke, Patrick and Libisch, Florian},\n  journal={npj Computational Materials},\n  volume={8},\n  number={1},\n  pages={116},\n  year={2022},\n  publisher={Nature Publishing Group UK London}\n}\n\n
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\n \n\n \n \n \n \n \n Efficient modeling of organic adsorbates on oxygen-intercalated graphene on Ir (111).\n \n \n \n\n\n \n Järvi, J.; Todorović, M.; and Rinke, P.\n\n\n \n\n\n\n Physical Review B, 105(19): 195304. 2022.\n \n\n\n\n
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@article{jarvi2022efficient,\n  title={Efficient modeling of organic adsorbates on oxygen-intercalated graphene on Ir (111)},\n  author={J{\\"a}rvi, Jari and Todorovi{\\'c}, Milica and Rinke, Patrick},\n  journal={Physical Review B},\n  volume={105},\n  number={19},\n  pages={195304},\n  year={2022},\n  publisher={APS}\n}\n\n
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\n \n\n \n \n \n \n \n Machine Learning Optimization of Lignin Properties in Green Biorefineries.\n \n \n \n\n\n \n Löfgren, J.; Tarasov, D.; Koitto, T.; Rinke, P.; Balakshin, M.; and Todorovic, M.\n\n\n \n\n\n\n ACS Sustainable Chemistry & Engineering, 10(29): 9469–9479. 2022.\n \n\n\n\n
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@article{lofgren2022machine,\n  title={Machine Learning Optimization of Lignin Properties in Green Biorefineries},\n  author={L{\\"o}fgren, Joakim and Tarasov, Dmitry and Koitto, Taru and Rinke, Patrick and Balakshin, Mikhail and Todorovic, Milica},\n  journal={ACS Sustainable Chemistry \\& Engineering},\n  volume={10},\n  number={29},\n  pages={9469--9479},\n  year={2022},\n  publisher={American Chemical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Compositional engineering of perovskites with machine learning.\n \n \n \n\n\n \n Laakso, J.; Todorović, M.; Li, J.; Zhang, G.; and Rinke, P.\n\n\n \n\n\n\n Physical Review Materials, 6(11): 113801. 2022.\n \n\n\n\n
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@article{laakso2022compositional,\n  title={Compositional engineering of perovskites with machine learning},\n  author={Laakso, Jarno and Todorovi{\\'c}, Milica and Li, Jingrui and Zhang, Guo-Xu and Rinke, Patrick},\n  journal={Physical Review Materials},\n  volume={6},\n  number={11},\n  pages={113801},\n  year={2022},\n  publisher={APS}\n}\n\n
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\n \n\n \n \n \n \n \n More trustworthy Bayesian optimization of materials properties by adding human into the loop.\n \n \n \n\n\n \n Tiihonen, A.; Filstroff, L.; Mikkola, P.; Lehto, E.; Kaski, S.; Todorović, M.; and Rinke, P.\n\n\n \n\n\n\n In AI for Accelerated Materials Design NeurIPS 2022 Workshop, 2022. \n \n\n\n\n
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@inproceedings{tiihonen2022more,\n  title={More trustworthy Bayesian optimization of materials properties by adding human into the loop},\n  author={Tiihonen, Armi and Filstroff, Louis and Mikkola, Petrus and Lehto, Emma and Kaski, Samuel and Todorovi{\\'c}, Milica and Rinke, Patrick},\n  booktitle={AI for Accelerated Materials Design NeurIPS 2022 Workshop},\n  year={2022}\n}\n\n
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\n  \n 2021\n \n \n (4)\n \n \n
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\n \n\n \n \n \n \n \n Integrating bayesian inference with scanning probe experiments for robust identification of surface adsorbate configurations.\n \n \n \n\n\n \n Järvi, J.; Alldritt, B.; Krejčí, Ondřej; Todorović, M.; Liljeroth, P.; and Rinke, P.\n\n\n \n\n\n\n Advanced Functional Materials, 31(32): 2010853. 2021.\n \n\n\n\n
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@article{jarvi2021integrating,\n  title={Integrating bayesian inference with scanning probe experiments for robust identification of surface adsorbate configurations},\n  author={J{\\"a}rvi, Jari and Alldritt, Benjamin and Krej{\\v{c}}{\\'i}, Ond{\\v{r}}ej and Todorovi{\\'c}, Milica and Liljeroth, Peter and Rinke, Patrick},\n  journal={Advanced Functional Materials},\n  volume={31},\n  number={32},\n  pages={2010853},\n  year={2021}\n}\n\n
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\n \n\n \n \n \n \n \n Predicting gas–particle partitioning coefficients of atmospheric molecules with machine learning.\n \n \n \n\n\n \n Lumiaro, E.; Todorović, M.; Kurten, T.; Vehkamäki, H.; and Rinke, P.\n\n\n \n\n\n\n Atmospheric Chemistry and Physics, 21(17): 13227–13246. 2021.\n \n\n\n\n
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@article{lumiaro2021predicting,\n  title={Predicting gas--particle partitioning coefficients of atmospheric molecules with machine learning},\n  author={Lumiaro, Emma and Todorovi{\\'c}, Milica and Kurten, Theo and Vehkam{\\"a}ki, Hanna and Rinke, Patrick},\n  journal={Atmospheric Chemistry and Physics},\n  volume={21},\n  number={17},\n  pages={13227--13246},\n  year={2021},\n  publisher={Copernicus GmbH}\n}\n\n
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\n \n\n \n \n \n \n \n Efficient Amino Acid Conformer Search with Bayesian Optimization.\n \n \n \n\n\n \n Fang, L.; Makkonen, E.; Todorović, M.; Rinke, P.; and Chen, X.\n\n\n \n\n\n\n Journal of chemical theory and computation, 17(3): 1955–1966. 2021.\n \n\n\n\n
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@article{fang2021efficient,\n  title={Efficient Amino Acid Conformer Search with Bayesian Optimization},\n  author={Fang, Lincan and Makkonen, Esko and Todorovi{\\'c}, Milica and Rinke, Patrick and Chen, Xi},\n  journal={Journal of chemical theory and computation},\n  volume={17},\n  number={3},\n  pages={1955--1966},\n  year={2021},\n  publisher={ACS Publications}\n}\n\n
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\n \n\n \n \n \n \n \n Efficient hyperparameter tuning for kernel ridge regression with Bayesian optimization.\n \n \n \n\n\n \n Stuke, A.; Rinke, P.; and Todorović, M.\n\n\n \n\n\n\n Machine Learning: Science and Technology, 2(3): 035022. 2021.\n \n\n\n\n
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@article{stuke2021efficient,\n  title={Efficient hyperparameter tuning for kernel ridge regression with Bayesian optimization},\n  author={Stuke, Annika and Rinke, Patrick and Todorovi{\\'c}, Milica},\n  journal={Machine Learning: Science and Technology},\n  volume={2},\n  number={3},\n  pages={035022},\n  year={2021},\n  publisher={IOP Publishing}\n}\n\n
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\n  \n 2020\n \n \n (6)\n \n \n
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\n \n\n \n \n \n \n \n Atomic structures and orbital energies of 61,489 crystal-forming organic molecules.\n \n \n \n\n\n \n Stuke, A.; Kunkel, C.; Golze, D.; Todorović, M.; Margraf, J. T; Reuter, K.; Rinke, P.; and Oberhofer, H.\n\n\n \n\n\n\n Scientific data, 7(1): 58. 2020.\n \n\n\n\n
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@article{stuke2020atomic,\n  title={Atomic structures and orbital energies of 61,489 crystal-forming organic molecules},\n  author={Stuke, Annika and Kunkel, Christian and Golze, Dorothea and Todorovi{\\'c}, Milica and Margraf, Johannes T and Reuter, Karsten and Rinke, Patrick and Oberhofer, Harald},\n  journal={Scientific data},\n  volume={7},\n  number={1},\n  pages={58},\n  year={2020},\n  publisher={Nature Publishing Group UK London}\n}\n\n
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\n \n\n \n \n \n \n \n Projective Preferential Bayesian Optimization.\n \n \n \n\n\n \n Mikkola, P.; Todorović, M.; Järvi, J.; Rinke, P.; and Kaski, S.\n\n\n \n\n\n\n In International Conference on Machine Learning, pages 6884–6892, 2020. PMLR\n \n\n\n\n
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@inproceedings{mikkola2020projective,\n  title={Projective Preferential Bayesian Optimization},\n  author={Mikkola, Petrus and Todorovi{\\'c}, Milica and J{\\"a}rvi, Jari and Rinke, Patrick and Kaski, Samuel},\n  booktitle={International Conference on Machine Learning},\n  pages={6884--6892},\n  year={2020},\n  organization={PMLR}\n}\n\n
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\n \n\n \n \n \n \n \n Detecting Stable Surface Adsorbates with Bayesian Optimization.\n \n \n \n\n\n \n Järvi, J.; Todorovic, M.; and Rinke, P.\n\n\n \n\n\n\n Bulletin of the American Physical Society, 65. 2020.\n \n\n\n\n
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@article{jarvi2020detecting,\n  title={Detecting Stable Surface Adsorbates with Bayesian Optimization},\n  author={J{\\"a}rvi, Jari and Todorovic, Milica and Rinke, Patrick},\n  journal={Bulletin of the American Physical Society},\n  volume={65},\n  year={2020},\n  publisher={American Physical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Detecting stable adsorbates of (1S)-camphor on Cu (111) with Bayesian optimization.\n \n \n \n\n\n \n Järvi, J.; Rinke, P.; and Todorović, M.\n\n\n \n\n\n\n Beilstein journal of nanotechnology, 11(1): 1577–1589. 2020.\n \n\n\n\n
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@article{jarvi2020detecting,\n  title={Detecting stable adsorbates of (1S)-camphor on Cu (111) with Bayesian optimization},\n  author={J{\\"a}rvi, Jari and Rinke, Patrick and Todorovi{\\'c}, Milica},\n  journal={Beilstein journal of nanotechnology},\n  volume={11},\n  number={1},\n  pages={1577--1589},\n  year={2020},\n  publisher={Beilstein-Institut}\n}\n\n
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\n \n\n \n \n \n \n \n Efficient Cysteine Conformer Search with Bayesian Optimization.\n \n \n \n\n\n \n Fang, L.; Makkonen, E.; Todorovic, M.; Rinke, P.; and Chen, X.\n\n\n \n\n\n\n arXiv preprint arXiv:2006.15006. 2020.\n \n\n\n\n
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@article{fang2020efficient,\n  title={Efficient Cysteine Conformer Search with Bayesian Optimization},\n  author={Fang, Lincan and Makkonen, Esko and Todorovic, Milica and Rinke, Patrick and Chen, Xi},\n  journal={arXiv preprint arXiv:2006.15006},\n  year={2020}\n}\n\n
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\n \n\n \n \n \n \n \n Charge Transfer into Organic Thin Films: A Deeper Insight through Machine-Learning-Assisted Structure Search.\n \n \n \n\n\n \n Egger, A. T; Hörmann, L.; Jeindl, A.; Scherbela, M.; Obersteiner, V.; Todorović, M.; Rinke, P.; and Hofmann, O. T\n\n\n \n\n\n\n Advanced Science, 7(15): 2000992. 2020.\n \n\n\n\n
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@article{egger2020charge,\n  title={Charge Transfer into Organic Thin Films: A Deeper Insight through Machine-Learning-Assisted Structure Search},\n  author={Egger, Alexander T and H{\\"o}rmann, Lukas and Jeindl, Andreas and Scherbela, Michael and Obersteiner, Veronika and Todorovi{\\'c}, Milica and Rinke, Patrick and Hofmann, Oliver T},\n  journal={Advanced Science},\n  volume={7},\n  number={15},\n  pages={2000992},\n  year={2020}\n}\n\n
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\n  \n 2019\n \n \n (5)\n \n \n
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\n \n\n \n \n \n \n \n Deep learning spectroscopy: Neural networks for molecular excitation spectra.\n \n \n \n\n\n \n Ghosh, K.; Stuke, A.; Todorović, M.; Jørgensen, P. B.; Schmidt, M. N; Vehtari, A.; and Rinke, P.\n\n\n \n\n\n\n Advanced science, 6(9): 1801367. 2019.\n \n\n\n\n
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@article{ghosh2019deep,\n  title={Deep learning spectroscopy: Neural networks for molecular excitation spectra},\n  author={Ghosh, Kunal and Stuke, Annika and Todorovi{\\'c}, Milica and J{\\o}rgensen, Peter Bj{\\o}rn and Schmidt, Mikkel N and Vehtari, Aki and Rinke, Patrick},\n  journal={Advanced science},\n  volume={6},\n  number={9},\n  pages={1801367},\n  year={2019}\n}\n\n
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\n \n\n \n \n \n \n \n Chemical diversity in molecular orbital energy predictions with kernel ridge regression.\n \n \n \n\n\n \n Stuke, A.; Todorović, M.; Rupp, M.; Kunkel, C.; Ghosh, K.; Himanen, L.; and Rinke, P.\n\n\n \n\n\n\n The Journal of chemical physics, 150(20). 2019.\n \n\n\n\n
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@article{stuke2019chemical,\n  title={Chemical diversity in molecular orbital energy predictions with kernel ridge regression},\n  author={Stuke, Annika and Todorovi{\\'c}, Milica and Rupp, Matthias and Kunkel, Christian and Ghosh, Kunal and Himanen, Lauri and Rinke, Patrick},\n  journal={The Journal of chemical physics},\n  volume={150},\n  number={20},\n  year={2019},\n  publisher={AIP Publishing}\n}\n\n
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\n \n\n \n \n \n \n \n Gold diggers: Altered reconstruction of the gold surface by physisorbed aromatic oligomers.\n \n \n \n\n\n \n Scarbath-Evers, L. K.; Todorović, M.; Golze, D.; Hammer, R.; Widdra, W.; Sebastiani, D.; and Rinke, P.\n\n\n \n\n\n\n Physical Review Materials, 3(1): 011601. 2019.\n \n\n\n\n
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@article{scarbath2019gold,\n  title={Gold diggers: Altered reconstruction of the gold surface by physisorbed aromatic oligomers},\n  author={Scarbath-Evers, Laura Katharina and Todorovi{\\'c}, Milica and Golze, Dorothea and Hammer, Ren{\\'e} and Widdra, Wolf and Sebastiani, Daniel and Rinke, Patrick},\n  journal={Physical Review Materials},\n  volume={3},\n  number={1},\n  pages={011601},\n  year={2019},\n  publisher={APS}\n}\n\n
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\n \n\n \n \n \n \n \n Bayesian inference of atomistic structure in functional materials.\n \n \n \n\n\n \n Todorović, M.; Gutmann, M. U; Corander, J.; and Rinke, P.\n\n\n \n\n\n\n Npj computational materials, 5(1): 35. 2019.\n \n\n\n\n
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@article{todorovic2019bayesian,\n  title={Bayesian inference of atomistic structure in functional materials},\n  author={Todorovi{\\'c}, Milica and Gutmann, Michael U and Corander, Jukka and Rinke, Patrick},\n  journal={Npj computational materials},\n  volume={5},\n  number={1},\n  pages={35},\n  year={2019},\n  publisher={Nature Publishing Group UK London}\n}\n\n
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\n \n\n \n \n \n \n \n First principles calculations on the clean and defective (101) anatase surface and upon hydrogen and H2Pc adsorption: the influence of electronic exchange and correlation and of basis set approximations.\n \n \n \n\n\n \n Martínez Casado, María Ruth; Mallia, G.; Harrison, N.; and Perez, R.\n\n\n \n\n\n\n Frontiers in Chemistry, 7: 220. 2019.\n \n\n\n\n
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@article{martinez2019first,\n  title={First principles calculations on the clean and defective (101) anatase surface and upon hydrogen and H2Pc adsorption: the influence of electronic exchange and correlation and of basis set approximations.},\n  author={Mart{\\'i}nez Casado, Mar{\\'i}a Ruth and Mallia, Giuseppe and Harrison, Nicholas and Perez, Ruben},\n  journal={Frontiers in Chemistry},\n  volume={7},\n  pages={220},\n  year={2019},\n  publisher={Frontiers}\n}\n\n
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\n  \n 2018\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n Pentacene/TiO2 anatase hybrid interface study by scanning probe microscopy and first principles calculations.\n \n \n \n\n\n \n Todorović, M.; Stetsovych, O.; Moreno, C.; Shimizu, T. K; Custance, O.; and Pérez, R.\n\n\n \n\n\n\n ACS applied materials & interfaces, 10(40): 34718–34726. 2018.\n \n\n\n\n
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@article{todorovic2018pentacene,\n  title={Pentacene/TiO2 anatase hybrid interface study by scanning probe microscopy and first principles calculations},\n  author={Todorovi{\\'c}, Milica and Stetsovych, Oleksandr and Moreno, C{\\'e}sar and Shimizu, Tomoko K and Custance, Oscar and P{\\'e}rez, Rub{\\'e}n},\n  journal={ACS applied materials \\& interfaces},\n  volume={10},\n  number={40},\n  pages={34718--34726},\n  year={2018},\n  publisher={American Chemical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Make your BOSS do the work: optimising technologies with artificial intelligence.\n \n \n \n\n\n \n Todorović, M.; and Rinke, P.\n\n\n \n\n\n\n Arkhimedes (2018): 1. 2018.\n \n\n\n\n
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@article{todorovic2018make,\n  title={Make your BOSS do the work: optimising technologies with artificial intelligence},\n  author={Todorovi{\\'c}, Milica and Rinke, Patrick},\n  journal={Arkhimedes (2018): 1},\n  year={2018},\n  publisher={Helsinki: Suomen fyysikkoseura: Suomen matemaattinen yhdistys}\n}\n\n
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\n \n\n \n \n \n \n \n Substitutional carbon doping of free-standing and Ru-supported BN sheets: a first-principles study.\n \n \n \n\n\n \n Berseneva, N; Komsa, H.; Vierimaa, V; Björkman, T; Fan, Z; Harju, A; Todorović, M; Krasheninnikov, A.; and Nieminen, R.\n\n\n \n\n\n\n Journal of Physics: Condensed Matter, 29(41): 415301. 2017.\n \n\n\n\n
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@article{berseneva2017substitutional,\n  title={Substitutional carbon doping of free-standing and Ru-supported BN sheets: a first-principles study},\n  author={Berseneva, N and Komsa, HP and Vierimaa, V and Bj{\\"o}rkman, T and Fan, Z and Harju, A and Todorovi{\\'c}, M and Krasheninnikov, AV and Nieminen, RM},\n  journal={Journal of Physics: Condensed Matter},\n  volume={29},\n  number={41},\n  pages={415301},\n  year={2017},\n  publisher={IOP Publishing}\n}\n\n
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\n  \n 2016\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Submolecular imaging by noncontact atomic force microscopy with an oxygen atom rigidly connected to a metallic probe.\n \n \n \n\n\n \n Mönig, H.; Hermoso, D. R; Dı́az Arado, Oscar; Todorović, M.; Timmer, A.; Schäfer, S.; Langewisch, G.; Pérez, R.; and Fuchs, H.\n\n\n \n\n\n\n ACS nano, 10(1): 1201–1209. 2016.\n \n\n\n\n
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@article{monig2016submolecular,\n  title={Submolecular imaging by noncontact atomic force microscopy with an oxygen atom rigidly connected to a metallic probe},\n  author={M{\\"o}nig, Harry and Hermoso, Diego R and D{\\'\\i}az Arado, Oscar and Todorovi{\\'c}, Milica and Timmer, Alexander and Sch{\\"a}fer, Simon and Langewisch, Gernot and P{\\'e}rez, Rub{\\'e}n and Fuchs, Harald},\n  journal={ACS nano},\n  volume={10},\n  number={1},\n  pages={1201--1209},\n  year={2016},\n  publisher={American Chemical Society}\n}\n
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\n  \n 2015\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n Atomic species identification at the (101) anatase surface by simultaneous scanning tunnelling and atomic force microscopy.\n \n \n \n\n\n \n Stetsovych, O.; Todorović, M.; Shimizu, T. K; Moreno, C.; Ryan, J. W.; León, C. P.; Sagisaka, K.; Palomares, E.; Matolı́n, Vladimı́r; Fujita, D.; and others\n\n\n \n\n\n\n Nature communications, 6(1): 7265. 2015.\n \n\n\n\n
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@article{stetsovych2015atomic,\n  title={Atomic species identification at the (101) anatase surface by simultaneous scanning tunnelling and atomic force microscopy},\n  author={Stetsovych, Oleksandr and Todorovi{\\'c}, Milica and Shimizu, Tomoko K and Moreno, C{\\'e}sar and Ryan, James William and Le{\\'o}n, Carmen P{\\'e}rez and Sagisaka, Keisuke and Palomares, Emilio and Matol{\\'\\i}n, Vladim{\\'\\i}r and Fujita, Daisuke and others},\n  journal={Nature communications},\n  volume={6},\n  number={1},\n  pages={7265},\n  year={2015},\n  publisher={Nature Publishing Group UK London}\n}\n\n
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\n \n\n \n \n \n \n \n Simultaneous measurement of multiple independent atomic-scale interactions using scanning probe microscopy: data interpretation and the effect of cross-talk.\n \n \n \n\n\n \n Baykara, M. Z; Todorović, M.; Mönig, H.; Schwendemann, T. C; Rodrigo, L.; Altman, E. I; Pérez, R.; and Schwarz, U. D\n\n\n \n\n\n\n The Journal of Physical Chemistry C, 119(12): 6670–6677. 2015.\n \n\n\n\n
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@article{baykara2015simultaneous,\n  title={Simultaneous measurement of multiple independent atomic-scale interactions using scanning probe microscopy: data interpretation and the effect of cross-talk},\n  author={Baykara, Mehmet Z and Todorovi{\\'c}, Milica and M{\\"o}nig, Harry and Schwendemann, Todd C and Rodrigo, Lucia and Altman, Eric I and P{\\'e}rez, Rub{\\'e}n and Schwarz, Udo D},\n  journal={The Journal of Physical Chemistry C},\n  volume={119},\n  number={12},\n  pages={6670--6677},\n  year={2015},\n  publisher={American Chemical Society}\n}\n\n
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\n  \n 2013\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n Density-functional theory study of gramicidin A ion channel geometry and electronic properties.\n \n \n \n\n\n \n Todorović, M.; Bowler, D. R; Gillan, M. J; and Miyazaki, T.\n\n\n \n\n\n\n Journal of The Royal Society Interface, 10(89): 20130547. 2013.\n \n\n\n\n
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@article{todorovic2013density,\n  title={Density-functional theory study of gramicidin A ion channel geometry and electronic properties},\n  author={Todorovi{\\'c}, Milica and Bowler, David R and Gillan, Michael J and Miyazaki, Tsuyoshi},\n  journal={Journal of The Royal Society Interface},\n  volume={10},\n  number={89},\n  pages={20130547},\n  year={2013},\n  publisher={The Royal Society}\n}\n\n
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\n \n\n \n \n \n \n \n Atom-specific forces and defect identification on surface-oxidized Cu (100) with combined 3D-AFM and STM measurements.\n \n \n \n\n\n \n Baykara, M. Z; Todorović, M.; Mönig, H.; Schwendemann, T. C; Ünverdi, Ö.; Rodrigo, L.; Altman, E. I; Pérez, R.; and Schwarz, U. D\n\n\n \n\n\n\n Physical Review B–Condensed Matter and Materials Physics, 87(15): 155414. 2013.\n \n\n\n\n
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@article{baykara2013atom,\n  title={Atom-specific forces and defect identification on surface-oxidized Cu (100) with combined 3D-AFM and STM measurements},\n  author={Baykara, Mehmet Z and Todorovi{\\'c}, Milica and M{\\"o}nig, Harry and Schwendemann, Todd C and {\\"U}nverdi, {\\"O}zhan and Rodrigo, Lucia and Altman, Eric I and P{\\'e}rez, Rub{\\'e}n and Schwarz, Udo D},\n  journal={Physical Review B{\\textendash}Condensed Matter and Materials Physics},\n  volume={87},\n  number={15},\n  pages={155414},\n  year={2013},\n  publisher={American Physical Society}\n}\n\n
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\n \n\n \n \n \n \n \n Understanding Scanning Tunneling Microscopy Contrast Mechanisms on Metal Oxides: A Case Study.\n \n \n \n\n\n \n Mönig, H.; Todorovic, M.; Baykara, M. Z; Schwendemann, T. C; Rodrigo, L.; Altman, E. I; Pérez, R.; and Schwarz, U. D\n\n\n \n\n\n\n ACS nano, 7(11): 10233–10244. 2013.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{monig2013understanding,\n  title={Understanding Scanning Tunneling Microscopy Contrast Mechanisms on Metal Oxides: A Case Study},\n  author={M{\\"o}nig, Harry and Todorovic, Milica and Baykara, Mehmet Z and Schwendemann, Todd C and Rodrigo, Luc{\\'\\i}a and Altman, Eric I and P{\\'e}rez, Rub{\\'e}n and Schwarz, Udo D},\n  journal={ACS nano},\n  volume={7},\n  number={11},\n  pages={10233--10244},\n  year={2013},\n  publisher={ACS Publications}\n}\n\n
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\n  \n 2011\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Non-adiabatic simulations of current-related structural transformations in metallic nanodevices.\n \n \n \n\n\n \n Todorović, M; and Bowler, D R\n\n\n \n\n\n\n Journal of Physics: Condensed Matter, 23(34): 345301. 2011.\n \n\n\n\n
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@article{todorovic2011non,\n  title={Non-adiabatic simulations of current-related structural transformations in metallic nanodevices},\n  author={Todorovi{\\'c}, M and Bowler, D R},\n  journal={Journal of Physics: Condensed Matter},\n  volume={23},\n  number={34},\n  pages={345301},\n  year={2011},\n  publisher={IOP Publishing}\n}\n\n
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\n  \n 2008\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Pseudo-atomic orbitals as basis sets for the O (N) DFT code CONQUEST.\n \n \n \n\n\n \n Torralba, A.; Todorović, M; Brázdová, V; Choudhury, R; Miyazaki, T; Gillan, M.; and Bowler, D.\n\n\n \n\n\n\n Journal of Physics: Condensed Matter, 20(29): 294206. 2008.\n \n\n\n\n
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@article{torralba2008pseudo,\n  title={Pseudo-atomic orbitals as basis sets for the O (N) DFT code CONQUEST},\n  author={Torralba, AS and Todorovi{\\'c}, M and Br{\\'a}zdov{\\'a}, V and Choudhury, R and Miyazaki, T and Gillan, MJ and Bowler, DR},\n  journal={Journal of Physics: Condensed Matter},\n  volume={20},\n  number={29},\n  pages={294206},\n  year={2008},\n  publisher={IOP Publishing}\n}\n\n
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\n  \n 2002\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Diffusion of a polaron in dangling bond wires on Si (001).\n \n \n \n\n\n \n Todorovic, M; Fisher, A.; and Bowler, D.\n\n\n \n\n\n\n Journal of Physics: Condensed Matter, 14(49): L749. 2002.\n \n\n\n\n
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@article{todorovic2002diffusion,\n  title={Diffusion of a polaron in dangling bond wires on Si (001)},\n  author={Todorovic, M and Fisher, AJ and Bowler, DR},\n  journal={Journal of Physics: Condensed Matter},\n  volume={14},\n  number={49},\n  pages={L749},\n  year={2002},\n  publisher={IOP Publishing}\n}\n\n
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