var bibbase_data = {"data":"<img src=\"//bibbase.org/img/ajax-loader.gif\" id=\"spinner\"\n  style=\"display: none;\" alt=\"Loading..\" />\n\n<div id=\"bibbase\">\n\n  <script type=\"text/javascript\">\n    var bibbase = {\n      params: {\"bib\":\"https://bibbase.org/network/files/KkByu8uHcEr482MkC\",\"jsonp\":\"1\",\"noBootstrap\":\"1\",\"host\":\"bibbase.org\",\"ssl\":false},\n      data: [{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A-MADMAN: annotation-based microarray data meta-analysis tool\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Bisognin\"],\"firstnames\":[\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Coppe\"],\"firstnames\":[\"Alessandro\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ferrari\"],\"firstnames\":[\"Francesco\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bicciato\"],\"firstnames\":[\"Silvio\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bortoluzzi\"],\"firstnames\":[\"Stefania\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"10\",\"number\":\"1\",\"pages\":\"201\",\"year\":\"2009\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{bisognin2009madman,\\n  title={A-MADMAN: annotation-based microarray data meta-analysis tool},\\n  author={Bisognin, Andrea and Coppe, Alessandro and Ferrari, Francesco and Risso, Davide and Romualdi, Chiara and Bicciato, Silvio and Bortoluzzi, Stefania},\\n  journal={BMC Bioinformatics},\\n  volume={10},\\n  number={1},\\n  pages={201},\\n  year={2009},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Bisognin, A.\",\"Coppe, A.\",\"Ferrari, F.\",\"Risso, D.\",\"Romualdi, C.\",\"Bicciato, S.\",\"Bortoluzzi, S.\"],\"key\":\"bisognin2009madman\",\"id\":\"bisognin2009madman\",\"bibbaseid\":\"bisognin-coppe-ferrari-risso-romualdi-bicciato-bortoluzzi-amadmanannotationbasedmicroarraydatametaanalysistool-2009\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A comparison on effects of normalisations in the detection of differentially expressed genes\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Massa\"],\"firstnames\":[\"Maria\",\"Sofia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"10\",\"number\":\"1\",\"pages\":\"61\",\"year\":\"2009\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{chiogna2009comparison,\\n  title={A comparison on effects of normalisations in the detection of differentially expressed genes},\\n  author={Chiogna, Monica and Massa, Maria Sofia and Risso, Davide and Romualdi, Chiara},\\n  journal={BMC Bioinformatics},\\n  volume={10},\\n  number={1},\\n  pages={61},\\n  year={2009},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Chiogna, M.\",\"Massa, M. S.\",\"Risso, D.\",\"Romualdi, C.\"],\"key\":\"chiogna2009comparison\",\"id\":\"chiogna2009comparison\",\"bibbaseid\":\"chiogna-massa-risso-romualdi-acomparisononeffectsofnormalisationsinthedetectionofdifferentiallyexpressedgenes-2009\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A modified LOESS normalization applied to microRNA arrays: a comparative evaluation\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Massa\"],\"firstnames\":[\"Maria\",\"Sofia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"25\",\"number\":\"20\",\"pages\":\"2685–2691\",\"year\":\"2009\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{risso2009modified,\\n  title={A modified LOESS normalization applied to microRNA arrays: a comparative evaluation},\\n  author={Risso, Davide and Massa, Maria Sofia and Chiogna, Monica and Romualdi, Chiara},\\n  journal={Bioinformatics},\\n  volume={25},\\n  number={20},\\n  pages={2685--2691},\\n  year={2009},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Massa, M. S.\",\"Chiogna, M.\",\"Romualdi, C.\"],\"key\":\"risso2009modified\",\"id\":\"risso2009modified\",\"bibbaseid\":\"risso-massa-chiogna-romualdi-amodifiedloessnormalizationappliedtomicrornaarraysacomparativeevaluation-2009\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A novel approach to the clustering of microarray data via nonparametric density estimation\",\"author\":[{\"propositions\":[],\"lastnames\":[\"De\",\"Bin\"],\"firstnames\":[\"Riccardo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"12\",\"number\":\"1\",\"pages\":\"49\",\"year\":\"2011\",\"publisher\":\"BioMed Central Ltd\",\"bibtex\":\"@article{de2011novel,\\n  title={A novel approach to the clustering of microarray data via nonparametric density estimation},\\n  author={De Bin, Riccardo and Risso, Davide},\\n  journal={BMC Bioinformatics},\\n  volume={12},\\n  number={1},\\n  pages={49},\\n  year={2011},\\n  publisher={BioMed Central Ltd}\\n}\\n\\n\",\"author_short\":[\"De Bin, R.\",\"Risso, D.\"],\"key\":\"de2011novel\",\"id\":\"de2011novel\",\"bibbaseid\":\"debin-risso-anovelapproachtotheclusteringofmicroarraydatavianonparametricdensityestimation-2011\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Statistical test of expression pattern (stepath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Martini\"],\"firstnames\":[\"Paolo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sales\"],\"firstnames\":[\"Gabriele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lanfranchi\"],\"firstnames\":[\"Gerolamo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Cagnin\"],\"firstnames\":[\"Stefano\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"12\",\"number\":\"1\",\"pages\":\"92\",\"year\":\"2011\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{martini2011statistical,\\n  title={Statistical test of expression pattern (stepath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies},\\n  author={Martini, Paolo and Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Lanfranchi, Gerolamo and Cagnin, Stefano},\\n  journal={BMC Bioinformatics},\\n  volume={12},\\n  number={1},\\n  pages={92},\\n  year={2011},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Martini, P.\",\"Risso, D.\",\"Sales, G.\",\"Romualdi, C.\",\"Lanfranchi, G.\",\"Cagnin, S.\"],\"key\":\"martini2011statistical\",\"id\":\"martini2011statistical\",\"bibbaseid\":\"martini-risso-sales-romualdi-lanfranchi-cagnin-statisticaltestofexpressionpatternstepathanewstrategytointegrategeneexpressiondatawithgenomicinformationinindividualandmetaanalysisstudies-2011\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"incollection\",\"type\":\"incollection\",\"title\":\"A hierarchical Bayesian model for RNA-Seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sales\"],\"firstnames\":[\"Gabriele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]}],\"booktitle\":\"Complex Models and Computational Methods in Statistics\",\"pages\":\"215–227\",\"year\":\"2012\",\"publisher\":\"Springer Milan Milano\",\"bibtex\":\"@incollection{risso2012hierarchical,\\n  title={A hierarchical Bayesian model for RNA-Seq data},\\n  author={Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Chiogna, Monica},\\n  booktitle={Complex Models and Computational Methods in Statistics},\\n  pages={215--227},\\n  year={2012},\\n  publisher={Springer Milan Milano}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Sales, G.\",\"Romualdi, C.\",\"Chiogna, M.\"],\"key\":\"risso2012hierarchical\",\"id\":\"risso2012hierarchical\",\"bibbaseid\":\"risso-sales-romualdi-chiogna-ahierarchicalbayesianmodelforrnaseqdata-2012\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"GC-content normalization for RNA-Seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schwartz\"],\"firstnames\":[\"Katja\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sherlock\"],\"firstnames\":[\"Gavin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"12\",\"number\":\"1\",\"pages\":\"480\",\"year\":\"2011\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{risso2011gc,\\n  title={GC-content normalization for RNA-Seq data},\\n  author={Risso, Davide and Schwartz, Katja and Sherlock, Gavin and Dudoit, Sandrine},\\n  journal={BMC Bioinformatics},\\n  volume={12},\\n  number={1},\\n  pages={480},\\n  year={2011},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Schwartz, K.\",\"Sherlock, G.\",\"Dudoit, S.\"],\"key\":\"risso2011gc\",\"id\":\"risso2011gc\",\"bibbaseid\":\"risso-schwartz-sherlock-dudoit-gccontentnormalizationforrnaseqdata-2011\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Silencing of odorant receptor genes by G protein $β$$γ$ signaling ensures the expression of one odorant receptor per olfactory sensory neuron\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Ferreira\"],\"firstnames\":[\"Todd\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wilson\"],\"firstnames\":[\"Sarah\",\"R\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Choi\"],\"firstnames\":[\"Yoon\",\"Gi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Speed\"],\"firstnames\":[\"Terence\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]}],\"journal\":\"Neuron\",\"volume\":\"81\",\"number\":\"4\",\"pages\":\"847–859\",\"year\":\"2014\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{ferreira2014silencing,\\n  title={Silencing of odorant receptor genes by G protein $\\\\beta$$\\\\gamma$ signaling ensures the expression of one odorant receptor per olfactory sensory neuron},\\n  author={Ferreira, Todd and Wilson, Sarah R and Choi, Yoon Gi and Risso, Davide and Dudoit, Sandrine and Speed, Terence P and Ngai, John},\\n  journal={Neuron},\\n  volume={81},\\n  number={4},\\n  pages={847--859},\\n  year={2014},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Ferreira, T.\",\"Wilson, S. R\",\"Choi, Y. G.\",\"Risso, D.\",\"Dudoit, S.\",\"Speed, T. P\",\"Ngai, J.\"],\"key\":\"ferreira2014silencing\",\"id\":\"ferreira2014silencing\",\"bibbaseid\":\"ferreira-wilson-choi-risso-dudoit-speed-ngai-silencingofodorantreceptorgenesbygproteinsignalingensurestheexpressionofoneodorantreceptorperolfactorysensoryneuron-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"incollection\",\"type\":\"incollection\",\"title\":\"The role of spike-in standards in the normalization of RNA-seq\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Speed\"],\"firstnames\":[\"Terence\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"booktitle\":\"Statistical Analysis of Next Generation Sequencing Data\",\"pages\":\"169–190\",\"year\":\"2014\",\"publisher\":\"Springer International Publishing Cham\",\"bibtex\":\"@incollection{risso2014role,\\n  title={The role of spike-in standards in the normalization of RNA-seq},\\n  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},\\n  booktitle={Statistical Analysis of Next Generation Sequencing Data},\\n  pages={169--190},\\n  year={2014},\\n  publisher={Springer International Publishing Cham}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Ngai, J.\",\"Speed, T. P\",\"Dudoit, S.\"],\"key\":\"risso2014role\",\"id\":\"risso2014role\",\"bibbaseid\":\"risso-ngai-speed-dudoit-theroleofspikeinstandardsinthenormalizationofrnaseq-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Normalization of RNA-seq data using factor analysis of control genes or samples\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Speed\"],\"firstnames\":[\"Terence\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"Nature Biotechnology\",\"volume\":\"32\",\"number\":\"9\",\"pages\":\"896–902\",\"year\":\"2014\",\"publisher\":\"Nature Publishing Group\",\"bibtex\":\"@article{risso2014normalization,\\n  title={Normalization of RNA-seq data using factor analysis of control genes or samples},\\n  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},\\n  journal={Nature Biotechnology},\\n  volume={32},\\n  number={9},\\n  pages={896--902},\\n  year={2014},\\n  publisher={Nature Publishing Group}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Ngai, J.\",\"Speed, T. P\",\"Dudoit, S.\"],\"key\":\"risso2014normalization\",\"id\":\"risso2014normalization\",\"bibbaseid\":\"risso-ngai-speed-dudoit-normalizationofrnaseqdatausingfactoranalysisofcontrolgenesorsamples-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Peixoto\"],\"firstnames\":[\"Lucia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Poplawski\"],\"firstnames\":[\"Shane\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wimmer\"],\"firstnames\":[\"Mathieu\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Speed\"],\"firstnames\":[\"Terence\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wood\"],\"firstnames\":[\"Marcelo\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Abel\"],\"firstnames\":[\"Ted\"],\"suffixes\":[]}],\"journal\":\"Nucleic Acids Research\",\"volume\":\"43\",\"number\":\"16\",\"pages\":\"7664–7674\",\"year\":\"2015\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{peixoto2015data,\\n  title={How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets},\\n  author={Peixoto, Lucia and Risso, Davide and Poplawski, Shane G and Wimmer, Mathieu E and Speed, Terence P and Wood, Marcelo A and Abel, Ted},\\n  journal={Nucleic Acids Research},\\n  volume={43},\\n  number={16},\\n  pages={7664--7674},\\n  year={2015},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Peixoto, L.\",\"Risso, D.\",\"Poplawski, S. G\",\"Wimmer, M. E\",\"Speed, T. P\",\"Wood, M. A\",\"Abel, T.\"],\"key\":\"peixoto2015data\",\"id\":\"peixoto2015data\",\"bibbaseid\":\"peixoto-risso-poplawski-wimmer-speed-wood-abel-howdataanalysisaffectspowerreproducibilityandbiologicalinsightofrnaseqstudiesincomplexdatasets-2015\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Revelli\"],\"firstnames\":[\"Matteo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Paparo\"],\"firstnames\":[\"Francesco\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bacigalupo\"],\"firstnames\":[\"Lorenzo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Puppo\"],\"firstnames\":[\"Cristina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Furnari\"],\"firstnames\":[\"Manuele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Conforti\"],\"firstnames\":[\"Cristina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Binda\"],\"firstnames\":[\"Gian\",\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Savarino\"],\"firstnames\":[\"Edoardo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Rollandi\"],\"firstnames\":[\"Gian\",\"Andrea\"],\"suffixes\":[]}],\"journal\":\"Clinical Imaging\",\"volume\":\"40\",\"number\":\"1\",\"pages\":\"57–62\",\"year\":\"2016\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{revelli2016comparison,\\n  title={Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience},\\n  author={Revelli, Matteo and Paparo, Francesco and Bacigalupo, Lorenzo and Puppo, Cristina and Furnari, Manuele and Conforti, Cristina and Binda, Gian Andrea and Savarino, Edoardo and Risso, Davide and Rollandi, Gian Andrea},\\n  journal={Clinical Imaging},\\n  volume={40},\\n  number={1},\\n  pages={57--62},\\n  year={2016},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Revelli, M.\",\"Paparo, F.\",\"Bacigalupo, L.\",\"Puppo, C.\",\"Furnari, M.\",\"Conforti, C.\",\"Binda, G. A.\",\"Savarino, E.\",\"Risso, D.\",\"Rollandi, G. A.\"],\"key\":\"revelli2016comparison\",\"id\":\"revelli2016comparison\",\"bibbaseid\":\"revelli-paparo-bacigalupo-puppo-furnari-conforti-binda-savarino-etal-comparisonofcomputedtomographyandmagneticresonanceimaginginthediscriminationofintraperitonealandextraperitonealrectalcancerinitialexperience-2016\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Contextual fear conditioning induces differential alternative splicing\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Poplawski\"],\"firstnames\":[\"Shane\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Peixoto\"],\"firstnames\":[\"Lucia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Porcari\"],\"firstnames\":[\"Giulia\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wimmer\"],\"firstnames\":[\"Mathieu\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"McNally\"],\"firstnames\":[\"Anna\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mizuno\"],\"firstnames\":[\"Keiko\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Giese\"],\"firstnames\":[\"K\",\"Peter\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chatterjee\"],\"firstnames\":[\"Snehajyoti\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Koberstein\"],\"firstnames\":[\"John\",\"N\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Neurobiology of Learning and Memory\",\"volume\":\"134\",\"pages\":\"221–235\",\"year\":\"2016\",\"publisher\":\"Academic Press\",\"bibtex\":\"@article{poplawski2016contextual,\\n  title={Contextual fear conditioning induces differential alternative splicing},\\n  author={Poplawski, Shane G and Peixoto, Lucia and Porcari, Giulia S and Wimmer, Mathieu E and McNally, Anna G and Mizuno, Keiko and Giese, K Peter and Chatterjee, Snehajyoti and Koberstein, John N and Risso, Davide and others},\\n  journal={Neurobiology of Learning and Memory},\\n  volume={134},\\n  pages={221--235},\\n  year={2016},\\n  publisher={Academic Press}\\n}\\n\\n\",\"author_short\":[\"Poplawski, S. G\",\"Peixoto, L.\",\"Porcari, G. S\",\"Wimmer, M. E\",\"McNally, A. G\",\"Mizuno, K.\",\"Giese, K P.\",\"Chatterjee, S.\",\"Koberstein, J. N\",\"Risso, D.\",\"others\"],\"key\":\"poplawski2016contextual\",\"id\":\"poplawski2016contextual\",\"bibbaseid\":\"poplawski-peixoto-porcari-wimmer-mcnally-mizuno-giese-chatterjee-etal-contextualfearconditioninginducesdifferentialalternativesplicing-2016\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Gerstner\"],\"firstnames\":[\"Jason\",\"R\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Koberstein\"],\"firstnames\":[\"John\",\"N\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Watson\"],\"firstnames\":[\"Adam\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zapero\"],\"firstnames\":[\"Nikolai\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Speed\"],\"firstnames\":[\"Terence\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Frank\"],\"firstnames\":[\"Marcos\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Peixoto\"],\"firstnames\":[\"Lucia\"],\"suffixes\":[]}],\"journal\":\"BMC Genomics\",\"volume\":\"17\",\"number\":\"Suppl 8\",\"pages\":\"727\",\"year\":\"2016\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{gerstner2016removal,\\n  title={Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex},\\n  author={Gerstner, Jason R and Koberstein, John N and Watson, Adam J and Zapero, Nikolai and Risso, Davide and Speed, Terence P and Frank, Marcos G and Peixoto, Lucia},\\n  journal={BMC Genomics},\\n  volume={17},\\n  number={Suppl 8},\\n  pages={727},\\n  year={2016},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Gerstner, J. R\",\"Koberstein, J. N\",\"Watson, A. J\",\"Zapero, N.\",\"Risso, D.\",\"Speed, T. P\",\"Frank, M. G\",\"Peixoto, L.\"],\"key\":\"gerstner2016removal\",\"id\":\"gerstner2016removal\",\"bibbaseid\":\"gerstner-koberstein-watson-zapero-risso-speed-frank-peixoto-removalofunwantedvariationrevealsnovelpatternsofgeneexpressionlinkedtosleephomeostasisinmurinecortex-2016\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Choi\"],\"firstnames\":[\"Yong\",\"Jin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lin\"],\"firstnames\":[\"Chao-Po\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Sean\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kim\"],\"firstnames\":[\"Thomas\",\"Aquinas\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tan\"],\"firstnames\":[\"Meng\",\"How\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Li\"],\"firstnames\":[\"Jin\",\"Billy\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wu\"],\"firstnames\":[\"Yalei\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Caifu\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Xuan\"],\"firstnames\":[\"Zhenyu\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Science\",\"volume\":\"355\",\"number\":\"6325\",\"pages\":\"eaag1927\",\"year\":\"2017\",\"publisher\":\"American Association for the Advancement of Science\",\"bibtex\":\"@article{choi2017deficiency,\\n  title={Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells},\\n  author={Choi, Yong Jin and Lin, Chao-Po and Risso, Davide and Chen, Sean and Kim, Thomas Aquinas and Tan, Meng How and Li, Jin Billy and Wu, Yalei and Chen, Caifu and Xuan, Zhenyu and others},\\n  journal={Science},\\n  volume={355},\\n  number={6325},\\n  pages={eaag1927},\\n  year={2017},\\n  publisher={American Association for the Advancement of Science}\\n}\\n\\n\",\"author_short\":[\"Choi, Y. J.\",\"Lin, C.\",\"Risso, D.\",\"Chen, S.\",\"Kim, T. A.\",\"Tan, M. H.\",\"Li, J. B.\",\"Wu, Y.\",\"Chen, C.\",\"Xuan, Z.\",\"others\"],\"key\":\"choi2017deficiency\",\"id\":\"choi2017deficiency\",\"bibbaseid\":\"choi-lin-risso-chen-kim-tan-li-wu-etal-deficiencyofmicrornamir34aexpandscellfatepotentialinpluripotentstemcells-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fletcher\"],\"firstnames\":[\"Russell\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Das\"],\"firstnames\":[\"Diya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Yosef\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"BMC Genomics\",\"volume\":\"19\",\"number\":\"1\",\"pages\":\"477\",\"year\":\"2018\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{street2018slingshot,\\n  title={Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics},\\n  author={Street, Kelly and Risso, Davide and Fletcher, Russell B and Das, Diya and Ngai, John and Yosef, Nir and Purdom, Elizabeth and Dudoit, Sandrine},\\n  journal={BMC Genomics},\\n  volume={19},\\n  number={1},\\n  pages={477},\\n  year={2018},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Street, K.\",\"Risso, D.\",\"Fletcher, R. B\",\"Das, D.\",\"Ngai, J.\",\"Yosef, N.\",\"Purdom, E.\",\"Dudoit, S.\"],\"key\":\"street2018slingshot\",\"id\":\"street2018slingshot\",\"bibbaseid\":\"street-risso-fletcher-das-ngai-yosef-purdom-dudoit-slingshotcelllineageandpseudotimeinferenceforsinglecelltranscriptomics-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Deconstructing olfactory stem cell trajectories at single-cell resolution\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Fletcher\"],\"firstnames\":[\"Russell\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Das\"],\"firstnames\":[\"Diya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gadye\"],\"firstnames\":[\"Levi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\",\"N\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Baudhuin\"],\"firstnames\":[\"Ariane\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wagner\"],\"firstnames\":[\"Allon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Cole\"],\"firstnames\":[\"Michael\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Flores\"],\"firstnames\":[\"Quetzal\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Choi\"],\"firstnames\":[\"Yoon\",\"Gi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Yosef\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Cell Stem Cell\",\"volume\":\"20\",\"number\":\"6\",\"pages\":\"817–830\",\"year\":\"2017\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{fletcher2017deconstructing,\\n  title={Deconstructing olfactory stem cell trajectories at single-cell resolution},\\n  author={Fletcher, Russell B and Das, Diya and Gadye, Levi and Street, Kelly N and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Flores, Quetzal and Choi, Yoon Gi and Yosef, Nir and others},\\n  journal={Cell Stem Cell},\\n  volume={20},\\n  number={6},\\n  pages={817--830},\\n  year={2017},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Fletcher, R. B\",\"Das, D.\",\"Gadye, L.\",\"Street, K. N\",\"Baudhuin, A.\",\"Wagner, A.\",\"Cole, M. B\",\"Flores, Q.\",\"Choi, Y. G.\",\"Yosef, N.\",\"others\"],\"key\":\"fletcher2017deconstructing\",\"id\":\"fletcher2017deconstructing\",\"bibbaseid\":\"fletcher-das-gadye-street-baudhuin-wagner-cole-flores-etal-deconstructingolfactorystemcelltrajectoriesatsinglecellresolution-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Normalizing single-cell RNA sequencing data: challenges and opportunities\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Vallejos\"],\"firstnames\":[\"Catalina\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Scialdone\"],\"firstnames\":[\"Antonio\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Marioni\"],\"firstnames\":[\"John\",\"C\"],\"suffixes\":[]}],\"journal\":\"Nature Methods\",\"volume\":\"14\",\"number\":\"6\",\"pages\":\"565–571\",\"year\":\"2017\",\"publisher\":\"Nature Publishing Group US New York\",\"bibtex\":\"@article{vallejos2017normalizing,\\n  title={Normalizing single-cell RNA sequencing data: challenges and opportunities},\\n  author={Vallejos, Catalina A and Risso, Davide and Scialdone, Antonio and Dudoit, Sandrine and Marioni, John C},\\n  journal={Nature Methods},\\n  volume={14},\\n  number={6},\\n  pages={565--571},\\n  year={2017},\\n  publisher={Nature Publishing Group US New York}\\n}\\n\\n\",\"author_short\":[\"Vallejos, C. A\",\"Risso, D.\",\"Scialdone, A.\",\"Dudoit, S.\",\"Marioni, J. C\"],\"key\":\"vallejos2017normalizing\",\"id\":\"vallejos2017normalizing\",\"bibbaseid\":\"vallejos-risso-scialdone-dudoit-marioni-normalizingsinglecellrnasequencingdatachallengesandopportunities-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Perraudeau\"],\"firstnames\":[\"Fanny\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"F1000Research\",\"volume\":\"6\",\"pages\":\"1158\",\"year\":\"2017\",\"bibtex\":\"@article{perraudeau2017bioconductor,\\n  title={Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference},\\n  author={Perraudeau, Fanny and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine},\\n  journal={F1000Research},\\n  volume={6},\\n  pages={1158},\\n  year={2017}\\n}\\n\\n\",\"author_short\":[\"Perraudeau, F.\",\"Risso, D.\",\"Street, K.\",\"Purdom, E.\",\"Dudoit, S.\"],\"key\":\"perraudeau2017bioconductor\",\"id\":\"perraudeau2017bioconductor\",\"bibbaseid\":\"perraudeau-risso-street-purdom-dudoit-bioconductorworkflowforsinglecellrnasequencingnormalizationdimensionalityreductionclusteringandlineageinference-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Injury activates transient olfactory stem cell states with diverse lineage capacities\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Gadye\"],\"firstnames\":[\"Levi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Das\"],\"firstnames\":[\"Diya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sanchez\"],\"firstnames\":[\"Michael\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Baudhuin\"],\"firstnames\":[\"Ariane\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wagner\"],\"firstnames\":[\"Allon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Cole\"],\"firstnames\":[\"Michael\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Choi\"],\"firstnames\":[\"Yoon\",\"Gi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Yosef\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Cell Stem Cell\",\"volume\":\"21\",\"number\":\"6\",\"pages\":\"775–790\",\"year\":\"2017\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{gadye2017injury,\\n  title={Injury activates transient olfactory stem cell states with diverse lineage capacities},\\n  author={Gadye, Levi and Das, Diya and Sanchez, Michael A and Street, Kelly and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Choi, Yoon Gi and Yosef, Nir and Purdom, Elizabeth and others},\\n  journal={Cell Stem Cell},\\n  volume={21},\\n  number={6},\\n  pages={775--790},\\n  year={2017},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Gadye, L.\",\"Das, D.\",\"Sanchez, M. A\",\"Street, K.\",\"Baudhuin, A.\",\"Wagner, A.\",\"Cole, M. B\",\"Choi, Y. G.\",\"Yosef, N.\",\"Purdom, E.\",\"others\"],\"key\":\"gadye2017injury\",\"id\":\"gadye2017injury\",\"bibbaseid\":\"gadye-das-sanchez-street-baudhuin-wagner-cole-choi-etal-injuryactivatestransientolfactorystemcellstateswithdiverselineagecapacities-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Performance assessment and selection of normalization procedures for single-cell RNA-seq\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Cole\"],\"firstnames\":[\"Michael\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wagner\"],\"firstnames\":[\"Allon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"DeTomaso\"],\"firstnames\":[\"David\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Yosef\"],\"firstnames\":[\"Nir\"],\"suffixes\":[]}],\"journal\":\"Cell Systems\",\"volume\":\"8\",\"number\":\"4\",\"pages\":\"315–328\",\"year\":\"2019\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{cole2019performance,\\n  title={Performance assessment and selection of normalization procedures for single-cell RNA-seq},\\n  author={Cole, Michael B and Risso, Davide and Wagner, Allon and DeTomaso, David and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine and Yosef, Nir},\\n  journal={Cell Systems},\\n  volume={8},\\n  number={4},\\n  pages={315--328},\\n  year={2019},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Cole, M. B\",\"Risso, D.\",\"Wagner, A.\",\"DeTomaso, D.\",\"Ngai, J.\",\"Purdom, E.\",\"Dudoit, S.\",\"Yosef, N.\"],\"key\":\"cole2019performance\",\"id\":\"cole2019performance\",\"bibbaseid\":\"cole-risso-wagner-detomaso-ngai-purdom-dudoit-yosef-performanceassessmentandselectionofnormalizationproceduresforsinglecellrnaseq-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Koberstein\"],\"firstnames\":[\"John\",\"N\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Poplawski\"],\"firstnames\":[\"Shane\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wimmer\"],\"firstnames\":[\"Mathieu\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Porcari\"],\"firstnames\":[\"Giulia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kao\"],\"firstnames\":[\"Charlly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gomes\"],\"firstnames\":[\"Bruce\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hakonarson\"],\"firstnames\":[\"Hakon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zhang\"],\"firstnames\":[\"Nancy\",\"R\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schultz\"],\"firstnames\":[\"Robert\",\"T\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Science Signaling\",\"volume\":\"11\",\"number\":\"513\",\"pages\":\"eaan6500\",\"year\":\"2018\",\"publisher\":\"American Association for the Advancement of Science\",\"bibtex\":\"@article{koberstein2018learning,\\n  title={Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism},\\n  author={Koberstein, John N and Poplawski, Shane G and Wimmer, Mathieu E and Porcari, Giulia and Kao, Charlly and Gomes, Bruce and Risso, Davide and Hakonarson, Hakon and Zhang, Nancy R and Schultz, Robert T and others},\\n  journal={Science Signaling},\\n  volume={11},\\n  number={513},\\n  pages={eaan6500},\\n  year={2018},\\n  publisher={American Association for the Advancement of Science}\\n}\\n\\n\",\"author_short\":[\"Koberstein, J. N\",\"Poplawski, S. G\",\"Wimmer, M. E\",\"Porcari, G.\",\"Kao, C.\",\"Gomes, B.\",\"Risso, D.\",\"Hakonarson, H.\",\"Zhang, N. R\",\"Schultz, R. T\",\"others\"],\"key\":\"koberstein2018learning\",\"id\":\"koberstein2018learning\",\"bibbaseid\":\"koberstein-poplawski-wimmer-porcari-kao-gomes-risso-hakonarson-etal-learningdependentchromatinremodelinghighlightsnoncodingregulatoryregionslinkedtoautism-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A general and flexible method for signal extraction from single-cell RNA-seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Perraudeau\"],\"firstnames\":[\"Fanny\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gribkova\"],\"firstnames\":[\"Svetlana\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vert\"],\"firstnames\":[\"Jean-Philippe\"],\"suffixes\":[]}],\"journal\":\"Nature Communications\",\"volume\":\"9\",\"number\":\"1\",\"pages\":\"284\",\"year\":\"2018\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{risso2018general,\\n  title={A general and flexible method for signal extraction from single-cell RNA-seq data},\\n  author={Risso, Davide and Perraudeau, Fanny and Gribkova, Svetlana and Dudoit, Sandrine and Vert, Jean-Philippe},\\n  journal={Nature Communications},\\n  volume={9},\\n  number={1},\\n  pages={284},\\n  year={2018},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Perraudeau, F.\",\"Gribkova, S.\",\"Dudoit, S.\",\"Vert, J.\"],\"key\":\"risso2018general\",\"id\":\"risso2018general\",\"bibbaseid\":\"risso-perraudeau-gribkova-dudoit-vert-ageneralandflexiblemethodforsignalextractionfromsinglecellrnaseqdata-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purvis\"],\"firstnames\":[\"Liam\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fletcher\"],\"firstnames\":[\"Russell\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Das\"],\"firstnames\":[\"Diya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]}],\"journal\":\"PLoS Computational Biology\",\"volume\":\"14\",\"number\":\"9\",\"pages\":\"e1006378\",\"year\":\"2018\",\"publisher\":\"Public Library of Science\",\"bibtex\":\"@article{risso2018clusterexperiment,\\n  title={clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets},\\n  author={Risso, Davide and Purvis, Liam and Fletcher, Russell B and Das, Diya and Ngai, John and Dudoit, Sandrine and Purdom, Elizabeth},\\n  journal={PLoS Computational Biology},\\n  volume={14},\\n  number={9},\\n  pages={e1006378},\\n  year={2018},\\n  publisher={Public Library of Science}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Purvis, L.\",\"Fletcher, R. B\",\"Das, D.\",\"Ngai, J.\",\"Dudoit, S.\",\"Purdom, E.\"],\"key\":\"risso2018clusterexperiment\",\"id\":\"risso2018clusterexperiment\",\"bibbaseid\":\"risso-purvis-fletcher-das-ngai-dudoit-purdom-clusterexperimentandrsecabioconductorpackageandframeworkforclusteringofsinglecellandotherlargegeneexpressiondatasets-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Combinatorial expression of Grp and Neurod6 defines dopamine neuron populations with distinct projection patterns and disease vulnerability\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"Daniel\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kosillo\"],\"firstnames\":[\"Polina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bateup\"],\"firstnames\":[\"Helen\",\"S\"],\"suffixes\":[]}],\"journal\":\"eNeuro\",\"volume\":\"5\",\"number\":\"3\",\"year\":\"2018\",\"publisher\":\"Society for Neuroscience\",\"bibtex\":\"@article{kramer2018combinatorial,\\n  title={Combinatorial expression of Grp and Neurod6 defines dopamine neuron populations with distinct projection patterns and disease vulnerability},\\n  author={Kramer, Daniel J and Risso, Davide and Kosillo, Polina and Ngai, John and Bateup, Helen S},\\n  journal={eNeuro},\\n  volume={5},\\n  number={3},\\n  year={2018},\\n  publisher={Society for Neuroscience}\\n}\\n\\n\",\"author_short\":[\"Kramer, D. J\",\"Risso, D.\",\"Kosillo, P.\",\"Ngai, J.\",\"Bateup, H. S\"],\"key\":\"kramer2018combinatorial\",\"id\":\"kramer2018combinatorial\",\"bibbaseid\":\"kramer-risso-kosillo-ngai-bateup-combinatorialexpressionofgrpandneurod6definesdopamineneuronpopulationswithdistinctprojectionpatternsanddiseasevulnerability-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications\",\"author\":[{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Perraudeau\"],\"firstnames\":[\"Fanny\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Soneson\"],\"firstnames\":[\"Charlotte\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Love\"],\"firstnames\":[\"Michael\",\"I.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vert\"],\"firstnames\":[\"Jean-Philippe\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Robinson\"],\"firstnames\":[\"Mark\",\"D.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clement\"],\"firstnames\":[\"Lieven\"],\"suffixes\":[]}],\"journal\":\"Genome Biology\",\"volume\":\"19\",\"year\":\"2018\",\"bibtex\":\"@article{van2018observation,\\n  title={Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications},\\n  author={Van den Berge, Koen and Perraudeau, Fanny and Soneson, Charlotte and Love, Michael I. and Risso, Davide and Vert, Jean-Philippe and Robinson, Mark D. and Dudoit, Sandrine and Clement, Lieven},\\n  journal={Genome Biology},\\n  volume={19},\\n  year={2018}\\n}\\n\\n\",\"author_short\":[\"Van den Berge, K.\",\"Perraudeau, F.\",\"Soneson, C.\",\"Love, M. I.\",\"Risso, D.\",\"Vert, J.\",\"Robinson, M. D.\",\"Dudoit, S.\",\"Clement, L.\"],\"key\":\"van2018observation\",\"id\":\"van2018observation\",\"bibbaseid\":\"vandenberge-perraudeau-soneson-love-risso-vert-robinson-dudoit-etal-observationweightsunlockbulkrnaseqtoolsforzeroinflationandsinglecellapplications-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Shank3 modulates sleep and expression of circadian transcription factors\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Ingiosi\"],\"firstnames\":[\"Ashley\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schoch\"],\"firstnames\":[\"Hannah\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wintler\"],\"firstnames\":[\"Taylor\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Singletary\"],\"firstnames\":[\"Kristan\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Roser\"],\"firstnames\":[\"Leandro\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Medina\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Frank\"],\"firstnames\":[\"Marcos\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Peixoto\"],\"firstnames\":[\"Lucia\"],\"suffixes\":[]}],\"journal\":\"Elife\",\"volume\":\"8\",\"pages\":\"e42819\",\"year\":\"2019\",\"publisher\":\"eLife Sciences Publications, Ltd\",\"bibtex\":\"@article{ingiosi2019shank3,\\n  title={Shank3 modulates sleep and expression of circadian transcription factors},\\n  author={Ingiosi, Ashley M and Schoch, Hannah and Wintler, Taylor and Singletary, Kristan G and Righelli, Dario and Roser, Leandro G and Medina, Elizabeth and Risso, Davide and Frank, Marcos G and Peixoto, Lucia},\\n  journal={Elife},\\n  volume={8},\\n  pages={e42819},\\n  year={2019},\\n  publisher={eLife Sciences Publications, Ltd}\\n}\\n\\n\",\"author_short\":[\"Ingiosi, A. M\",\"Schoch, H.\",\"Wintler, T.\",\"Singletary, K. G\",\"Righelli, D.\",\"Roser, L. G\",\"Medina, E.\",\"Risso, D.\",\"Frank, M. G\",\"Peixoto, L.\"],\"key\":\"ingiosi2019shank3\",\"id\":\"ingiosi2019shank3\",\"bibbaseid\":\"ingiosi-schoch-wintler-singletary-righelli-roser-medina-risso-etal-shank3modulatessleepandexpressionofcircadiantranscriptionfactors-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"techreport\",\"type\":\"techreport\",\"title\":\"Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Koberstein\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zhang\"],\"firstnames\":[\"Nancy\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Angelini\"],\"firstnames\":[\"Claudia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Peixoto\"],\"firstnames\":[\"Lucia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"year\":\"2018\",\"institution\":\"PeerJ Preprints\",\"bibtex\":\"@techreport{righelli2018differential,\\n  title={Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis},\\n  author={Righelli, Dario and Koberstein, John and Zhang, Nancy and Angelini, Claudia and Peixoto, Lucia and Risso, Davide},\\n  year={2018},\\n  institution={PeerJ Preprints}\\n}\\n\\n\",\"author_short\":[\"Righelli, D.\",\"Koberstein, J.\",\"Zhang, N.\",\"Angelini, C.\",\"Peixoto, L.\",\"Risso, D.\"],\"key\":\"righelli2018differential\",\"id\":\"righelli2018differential\",\"bibbaseid\":\"righelli-koberstein-zhang-angelini-peixoto-risso-differentialenrichedscan2descan2afastpipelineforbroadpeakanalysis-2018\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Complementary networks of cortical somatostatin interneurons enforce layer specific control\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Naka\"],\"firstnames\":[\"Alexander\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Veit\"],\"firstnames\":[\"Julia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Shababo\"],\"firstnames\":[\"Ben\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chance\"],\"firstnames\":[\"Rebecca\",\"K\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Stafford\"],\"firstnames\":[\"David\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Snyder\"],\"firstnames\":[\"Benjamin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Egladyous\"],\"firstnames\":[\"Andrew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chu\"],\"firstnames\":[\"Desiree\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sridharan\"],\"firstnames\":[\"Savitha\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Elife\",\"volume\":\"8\",\"pages\":\"e43696\",\"year\":\"2019\",\"publisher\":\"eLife Sciences Publications, Ltd\",\"bibtex\":\"@article{naka2019complementary,\\n  title={Complementary networks of cortical somatostatin interneurons enforce layer specific control},\\n  author={Naka, Alexander and Veit, Julia and Shababo, Ben and Chance, Rebecca K and Risso, Davide and Stafford, David and Snyder, Benjamin and Egladyous, Andrew and Chu, Desiree and Sridharan, Savitha and others},\\n  journal={Elife},\\n  volume={8},\\n  pages={e43696},\\n  year={2019},\\n  publisher={eLife Sciences Publications, Ltd}\\n}\\n\\n\",\"author_short\":[\"Naka, A.\",\"Veit, J.\",\"Shababo, B.\",\"Chance, R. K\",\"Risso, D.\",\"Stafford, D.\",\"Snyder, B.\",\"Egladyous, A.\",\"Chu, D.\",\"Sridharan, S.\",\"others\"],\"key\":\"naka2019complementary\",\"id\":\"naka2019complementary\",\"bibbaseid\":\"naka-veit-shababo-chance-risso-stafford-snyder-egladyous-etal-complementarynetworksofcorticalsomatostatininterneuronsenforcelayerspecificcontrol-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Orchestrating single-cell analysis with Bioconductor\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Amezquita\"],\"firstnames\":[\"Robert\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lun\"],\"firstnames\":[\"Aaron\",\"TL\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Becht\"],\"firstnames\":[\"Etienne\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Carey\"],\"firstnames\":[\"Vince\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Carpp\"],\"firstnames\":[\"Lindsay\",\"N\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Geistlinger\"],\"firstnames\":[\"Ludwig\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Marini\"],\"firstnames\":[\"Federico\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Rue-Albrecht\"],\"firstnames\":[\"Kevin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Soneson\"],\"firstnames\":[\"Charlotte\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Nature Methods\",\"volume\":\"17\",\"number\":\"2\",\"pages\":\"137–145\",\"year\":\"2020\",\"publisher\":\"Nature Publishing Group US New York\",\"bibtex\":\"@article{amezquita2020orchestrating,\\n  title={Orchestrating single-cell analysis with Bioconductor},\\n  author={Amezquita, Robert A and Lun, Aaron TL and Becht, Etienne and Carey, Vince J and Carpp, Lindsay N and Geistlinger, Ludwig and Marini, Federico and Rue-Albrecht, Kevin and Risso, Davide and Soneson, Charlotte and others},\\n  journal={Nature Methods},\\n  volume={17},\\n  number={2},\\n  pages={137--145},\\n  year={2020},\\n  publisher={Nature Publishing Group US New York}\\n}\\n\\n\",\"author_short\":[\"Amezquita, R. A\",\"Lun, A. T.\",\"Becht, E.\",\"Carey, V. J\",\"Carpp, L. N\",\"Geistlinger, L.\",\"Marini, F.\",\"Rue-Albrecht, K.\",\"Risso, D.\",\"Soneson, C.\",\"others\"],\"key\":\"amezquita2020orchestrating\",\"id\":\"amezquita2020orchestrating\",\"bibbaseid\":\"amezquita-lun-becht-carey-carpp-geistlinger-marini-ruealbrecht-etal-orchestratingsinglecellanalysiswithbioconductor-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Gaiti\"],\"firstnames\":[\"Federico\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chaligne\"],\"firstnames\":[\"Ronan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gu\"],\"firstnames\":[\"Hongcang\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Brand\"],\"firstnames\":[\"Ryan\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kothen-Hill\"],\"firstnames\":[\"Steven\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schulman\"],\"firstnames\":[\"Rafael\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Grigorev\"],\"firstnames\":[\"Kirill\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kim\"],\"firstnames\":[\"Kyu-Tae\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pastore\"],\"firstnames\":[\"Alessandro\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Nature\",\"volume\":\"569\",\"number\":\"7757\",\"pages\":\"576–580\",\"year\":\"2019\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{gaiti2019epigenetic,\\n  title={Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia},\\n  author={Gaiti, Federico and Chaligne, Ronan and Gu, Hongcang and Brand, Ryan M and Kothen-Hill, Steven and Schulman, Rafael C and Grigorev, Kirill and Risso, Davide and Kim, Kyu-Tae and Pastore, Alessandro and others},\\n  journal={Nature},\\n  volume={569},\\n  number={7757},\\n  pages={576--580},\\n  year={2019},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Gaiti, F.\",\"Chaligne, R.\",\"Gu, H.\",\"Brand, R. M\",\"Kothen-Hill, S.\",\"Schulman, R. C\",\"Grigorev, K.\",\"Risso, D.\",\"Kim, K.\",\"Pastore, A.\",\"others\"],\"key\":\"gaiti2019epigenetic\",\"id\":\"gaiti2019epigenetic\",\"bibbaseid\":\"gaiti-chaligne-gu-brand-kothenhill-schulman-grigorev-risso-etal-epigeneticevolutionandlineagehistoriesofchroniclymphocyticleukaemia-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Xue\"],\"firstnames\":[\"Jenny\",\"Y\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zhao\"],\"firstnames\":[\"Yulei\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Aronowitz\"],\"firstnames\":[\"Jordan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mai\"],\"firstnames\":[\"Trang\",\"T\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vides\"],\"firstnames\":[\"Alberto\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Qeriqi\"],\"firstnames\":[\"Besnik\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kim\"],\"firstnames\":[\"Dongsung\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Li\"],\"firstnames\":[\"Chuanchuan\"],\"suffixes\":[]},{\"propositions\":[\"de\"],\"lastnames\":[\"Stanchina\"],\"firstnames\":[\"Elisa\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mazutis\"],\"firstnames\":[\"Linas\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Nature\",\"volume\":\"577\",\"number\":\"7790\",\"pages\":\"421–425\",\"year\":\"2020\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{xue2020rapid,\\n  title={Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition},\\n  author={Xue, Jenny Y and Zhao, Yulei and Aronowitz, Jordan and Mai, Trang T and Vides, Alberto and Qeriqi, Besnik and Kim, Dongsung and Li, Chuanchuan and de Stanchina, Elisa and Mazutis, Linas and others},\\n  journal={Nature},\\n  volume={577},\\n  number={7790},\\n  pages={421--425},\\n  year={2020},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Xue, J. Y\",\"Zhao, Y.\",\"Aronowitz, J.\",\"Mai, T. T\",\"Vides, A.\",\"Qeriqi, B.\",\"Kim, D.\",\"Li, C.\",\"de Stanchina, E.\",\"Mazutis, L.\",\"others\"],\"key\":\"xue2020rapid\",\"id\":\"xue2020rapid\",\"bibbaseid\":\"xue-zhao-aronowitz-mai-vides-qeriqi-kim-li-etal-rapidnonuniformadaptationtoconformationspecifickrasg12cinhibition-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Improving replicability in single-cell RNA-Seq cell type discovery with Dune\",\"author\":[{\"propositions\":[\"de\"],\"lastnames\":[\"Bézieux\"],\"firstnames\":[\"Hector\",\"Roux\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fischer\"],\"firstnames\":[\"Stephan\"],\"suffixes\":[]},{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chance\"],\"firstnames\":[\"Rebecca\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gillis\"],\"firstnames\":[\"Jesse\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"BMC Bioinformatics\",\"volume\":\"25\",\"pages\":\"198\",\"year\":\"2024\",\"publisher\":\"Cold Spring Harbor Laboratory\",\"bibtex\":\"@article{de2020improving,\\n  title={Improving replicability in single-cell RNA-Seq cell type discovery with Dune},\\n  author={de B{\\\\'e}zieux, Hector Roux and Street, Kelly and Fischer, Stephan and Van den Berge, Koen and Chance, Rebecca and Risso, Davide and Gillis, Jesse and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine},\\n  journal={BMC Bioinformatics},\\n  volume={25},\\n  pages={198},\\n  year={2024},\\n  publisher={Cold Spring Harbor Laboratory}\\n}\\n\\n\",\"author_short\":[\"de Bézieux, H. R.\",\"Street, K.\",\"Fischer, S.\",\"Van den Berge, K.\",\"Chance, R.\",\"Risso, D.\",\"Gillis, J.\",\"Ngai, J.\",\"Purdom, E.\",\"Dudoit, S.\"],\"key\":\"de2020improving\",\"id\":\"de2020improving\",\"bibbaseid\":\"debzieux-street-fischer-vandenberge-chance-risso-gillis-ngai-etal-improvingreplicabilityinsinglecellrnaseqcelltypediscoverywithdune-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"mbkmeans: Fast clustering for single cell data using mini-batch k-means\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hicks\"],\"firstnames\":[\"Stephanie\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Liu\"],\"firstnames\":[\"Ruoxi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ni\"],\"firstnames\":[\"Yuwei\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"PLoS Computational Biology\",\"volume\":\"17\",\"number\":\"1\",\"pages\":\"e1008625\",\"year\":\"2021\",\"publisher\":\"Public Library of Science San Francisco, CA USA\",\"bibtex\":\"@article{hicks2021mbkmeans,\\n  title={mbkmeans: Fast clustering for single cell data using mini-batch k-means},\\n  author={Hicks, Stephanie C and Liu, Ruoxi and Ni, Yuwei and Purdom, Elizabeth and Risso, Davide},\\n  journal={PLoS Computational Biology},\\n  volume={17},\\n  number={1},\\n  pages={e1008625},\\n  year={2021},\\n  publisher={Public Library of Science San Francisco, CA USA}\\n}\\n\\n\",\"author_short\":[\"Hicks, S. C\",\"Liu, R.\",\"Ni, Y.\",\"Purdom, E.\",\"Risso, D.\"],\"key\":\"hicks2021mbkmeans\",\"id\":\"hicks2021mbkmeans\",\"bibbaseid\":\"hicks-liu-ni-purdom-risso-mbkmeansfastclusteringforsinglecelldatausingminibatchkmeans-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Calgaro\"],\"firstnames\":[\"Matteo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Waldron\"],\"firstnames\":[\"Levi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vitulo\"],\"firstnames\":[\"Nicola\"],\"suffixes\":[]}],\"journal\":\"Genome Biology\",\"volume\":\"21\",\"number\":\"1\",\"pages\":\"191\",\"year\":\"2020\",\"publisher\":\"BioMed Central London\",\"bibtex\":\"@article{calgaro2020assessment,\\n  title={Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data},\\n  author={Calgaro, Matteo and Romualdi, Chiara and Waldron, Levi and Risso, Davide and Vitulo, Nicola},\\n  journal={Genome Biology},\\n  volume={21},\\n  number={1},\\n  pages={191},\\n  year={2020},\\n  publisher={BioMed Central London}\\n}\\n\\n\",\"author_short\":[\"Calgaro, M.\",\"Romualdi, C.\",\"Waldron, L.\",\"Risso, D.\",\"Vitulo, N.\"],\"key\":\"calgaro2020assessment\",\"id\":\"calgaro2020assessment\",\"bibbaseid\":\"calgaro-romualdi-waldron-risso-vitulo-assessmentofstatisticalmethodsfromsinglecellbulkrnaseqandmetagenomicsappliedtomicrobiomedata-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pagnotta\"],\"firstnames\":[\"Stefano\",\"Maria\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"37\",\"number\":\"16\",\"pages\":\"2356–2364\",\"year\":\"2021\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{risso2021per,\\n  title={Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles},\\n  author={Risso, Davide and Pagnotta, Stefano Maria},\\n  journal={Bioinformatics},\\n  volume={37},\\n  number={16},\\n  pages={2356--2364},\\n  year={2021},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\",\"Pagnotta, S. M.\"],\"key\":\"risso2021per\",\"id\":\"risso2021per\",\"bibbaseid\":\"risso-pagnotta-persamplestandardizationandasymmetricwinsorizationleadtoaccurateclusteringofrnaseqexpressionprofiles-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Brann\"],\"firstnames\":[\"David\",\"H\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tsukahara\"],\"firstnames\":[\"Tatsuya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Weinreb\"],\"firstnames\":[\"Caleb\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lipovsek\"],\"firstnames\":[\"Marcela\"],\"suffixes\":[]},{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gong\"],\"firstnames\":[\"Boying\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chance\"],\"firstnames\":[\"Rebecca\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Macaulay\"],\"firstnames\":[\"Iain\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chou\"],\"firstnames\":[\"Hsin-Jung\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fletcher\"],\"firstnames\":[\"Russell\",\"B\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Science Advances\",\"volume\":\"6\",\"number\":\"31\",\"pages\":\"eabc5801\",\"year\":\"2020\",\"publisher\":\"American Association for the Advancement of Science\",\"bibtex\":\"@article{brann2020non,\\n  title={Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia},\\n  author={Brann, David H and Tsukahara, Tatsuya and Weinreb, Caleb and Lipovsek, Marcela and Van den Berge, Koen and Gong, Boying and Chance, Rebecca and Macaulay, Iain C and Chou, Hsin-Jung and Fletcher, Russell B and others},\\n  journal={Science Advances},\\n  volume={6},\\n  number={31},\\n  pages={eabc5801},\\n  year={2020},\\n  publisher={American Association for the Advancement of Science}\\n}\\n\\n\",\"author_short\":[\"Brann, D. H\",\"Tsukahara, T.\",\"Weinreb, C.\",\"Lipovsek, M.\",\"Van den Berge, K.\",\"Gong, B.\",\"Chance, R.\",\"Macaulay, I. C\",\"Chou, H.\",\"Fletcher, R. B\",\"others\"],\"key\":\"brann2020non\",\"id\":\"brann2020non\",\"bibbaseid\":\"brann-tsukahara-weinreb-lipovsek-vandenberge-gong-chance-macaulay-etal-nonneuronalexpressionofsarscov2entrygenesintheolfactorysystemsuggestsmechanismsunderlyingcovid19associatedanosmia-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Multi-omic data integration in oncology\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Finotello\"],\"firstnames\":[\"Francesca\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Calura\"],\"firstnames\":[\"Enrica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hautaniemi\"],\"firstnames\":[\"Sampsa\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]}],\"journal\":\"Frontiers in Oncology\",\"volume\":\"10\",\"pages\":\"1768\",\"year\":\"2020\",\"bibtex\":\"@article{finotello2020multi,\\n  title={Multi-omic data integration in oncology},\\n  author={Finotello, Francesca and Calura, Enrica and Risso, Davide and Hautaniemi, Sampsa and Romualdi, Chiara},\\n  journal={Frontiers in Oncology},\\n  volume={10},\\n  pages={1768},\\n  year={2020}\\n}\\n\\n\",\"author_short\":[\"Finotello, F.\",\"Calura, E.\",\"Risso, D.\",\"Hautaniemi, S.\",\"Romualdi, C.\"],\"key\":\"finotello2020multi\",\"id\":\"finotello2020multi\",\"bibbaseid\":\"finotello-calura-risso-hautaniemi-romualdi-multiomicdataintegrationinoncology-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Nguyen\"],\"firstnames\":[\"Thi\",\"Kim\",\"Hue\"],\"suffixes\":[]},{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"The Annals of Applied Statistics\",\"volume\":\"17\",\"number\":\"3\",\"pages\":\"2555–2573\",\"year\":\"2023\",\"publisher\":\"Institute of Mathematical Statistics\",\"bibtex\":\"@article{nguyen2023structure,\\n  title={Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data},\\n  author={Nguyen, Thi Kim Hue and Van den Berge, Koen and Chiogna, Monica and Risso, Davide},\\n  journal={The Annals of Applied Statistics},\\n  volume={17},\\n  number={3},\\n  pages={2555--2573},\\n  year={2023},\\n  publisher={Institute of Mathematical Statistics}\\n}\\n\\n\",\"author_short\":[\"Nguyen, T. K. H.\",\"Van den Berge, K.\",\"Chiogna, M.\",\"Risso, D.\"],\"key\":\"nguyen2023structure\",\"id\":\"nguyen2023structure\",\"bibbaseid\":\"nguyen-vandenberge-chiogna-risso-structurelearningforzeroinflatedcountswithanapplicationtosinglecellrnasequencingdata-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Joglekar\"],\"firstnames\":[\"Anoushka\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Prjibelski\"],\"firstnames\":[\"Andrey\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mahfouz\"],\"firstnames\":[\"Ahmed\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Collier\"],\"firstnames\":[\"Paul\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lin\"],\"firstnames\":[\"Susan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schlusche\"],\"firstnames\":[\"Anna\",\"Katharina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Marrocco\"],\"firstnames\":[\"Jordan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Williams\"],\"firstnames\":[\"Stephen\",\"R\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Haase\"],\"firstnames\":[\"Bettina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hayes\"],\"firstnames\":[\"Ashley\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Nature Communications\",\"volume\":\"12\",\"number\":\"1\",\"pages\":\"463\",\"year\":\"2021\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{joglekar2021spatially,\\n  title={A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain},\\n  author={Joglekar, Anoushka and Prjibelski, Andrey and Mahfouz, Ahmed and Collier, Paul and Lin, Susan and Schlusche, Anna Katharina and Marrocco, Jordan and Williams, Stephen R and Haase, Bettina and Hayes, Ashley and others},\\n  journal={Nature Communications},\\n  volume={12},\\n  number={1},\\n  pages={463},\\n  year={2021},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Joglekar, A.\",\"Prjibelski, A.\",\"Mahfouz, A.\",\"Collier, P.\",\"Lin, S.\",\"Schlusche, A. K.\",\"Marrocco, J.\",\"Williams, S. R\",\"Haase, B.\",\"Hayes, A.\",\"others\"],\"key\":\"joglekar2021spatially\",\"id\":\"joglekar2021spatially\",\"bibbaseid\":\"joglekar-prjibelski-mahfouz-collier-lin-schlusche-marrocco-williams-etal-aspatiallyresolvedbrainregionandcelltypespecificisoformatlasofthepostnatalmousebrain-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects\",\"author\":[{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chou\"],\"firstnames\":[\"Hsin-Jung\"],\"suffixes\":[]},{\"propositions\":[\"de\"],\"lastnames\":[\"Bézieux\"],\"firstnames\":[\"Hector\",\"Roux\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]}],\"journal\":\"Cell Reports Methods\",\"volume\":\"2\",\"number\":\"11\",\"year\":\"2022\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{van2022normalization,\\n  title={Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects},\\n  author={Van den Berge, Koen and Chou, Hsin-Jung and de B{\\\\'e}zieux, Hector Roux and Street, Kelly and Risso, Davide and Ngai, John and Dudoit, Sandrine},\\n  journal={Cell Reports Methods},\\n  volume={2},\\n  number={11},\\n  year={2022},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Van den Berge, K.\",\"Chou, H.\",\"de Bézieux, H. R.\",\"Street, K.\",\"Risso, D.\",\"Ngai, J.\",\"Dudoit, S.\"],\"key\":\"van2022normalization\",\"id\":\"van2022normalization\",\"bibbaseid\":\"vandenberge-chou-debzieux-street-risso-ngai-dudoit-normalizationbenchmarkofatacseqdatasetsshowstheimportanceofaccountingforgccontenteffects-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Weber\"],\"firstnames\":[\"Lukas\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Crowell\"],\"firstnames\":[\"Helena\",\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pardo\"],\"firstnames\":[\"Brenda\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Collado-Torres\"],\"firstnames\":[\"Leonardo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ghazanfar\"],\"firstnames\":[\"Shila\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lun\"],\"firstnames\":[\"Aaron\",\"TL\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hicks\"],\"firstnames\":[\"Stephanie\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"38\",\"number\":\"11\",\"pages\":\"3128–3131\",\"year\":\"2022\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{righelli2022spatialexperiment,\\n  title={SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor},\\n  author={Righelli, Dario and Weber, Lukas M and Crowell, Helena L and Pardo, Brenda and Collado-Torres, Leonardo and Ghazanfar, Shila and Lun, Aaron TL and Hicks, Stephanie C and Risso, Davide},\\n  journal={Bioinformatics},\\n  volume={38},\\n  number={11},\\n  pages={3128--3131},\\n  year={2022},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Righelli, D.\",\"Weber, L. M\",\"Crowell, H. L\",\"Pardo, B.\",\"Collado-Torres, L.\",\"Ghazanfar, S.\",\"Lun, A. T.\",\"Hicks, S. C\",\"Risso, D.\"],\"key\":\"righelli2022spatialexperiment\",\"id\":\"righelli2022spatialexperiment\",\"bibbaseid\":\"righelli-weber-crowell-pardo-colladotorres-ghazanfar-lun-hicks-etal-spatialexperimentinfrastructureforspatiallyresolvedtranscriptomicsdatainrusingbioconductor-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"incollection\",\"type\":\"incollection\",\"title\":\"Normalization of single-cell RNA-seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"booktitle\":\"RNA Bioinformatics\",\"pages\":\"303–329\",\"year\":\"2021\",\"publisher\":\"Springer US New York, NY\",\"bibtex\":\"@incollection{risso2021normalization,\\n  title={Normalization of single-cell RNA-seq data},\\n  author={Risso, Davide},\\n  booktitle={RNA Bioinformatics},\\n  pages={303--329},\\n  year={2021},\\n  publisher={Springer US New York, NY}\\n}\\n\\n\",\"author_short\":[\"Risso, D.\"],\"key\":\"risso2021normalization\",\"id\":\"risso2021normalization\",\"bibbaseid\":\"risso-normalizationofsinglecellrnaseqdata-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"PsiNorm: a scalable normalization for single-cell RNA-seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Borella\"],\"firstnames\":[\"Matteo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Martello\"],\"firstnames\":[\"Graziano\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"38\",\"number\":\"1\",\"pages\":\"164–172\",\"year\":\"2022\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{borella2022psinorm,\\n  title={PsiNorm: a scalable normalization for single-cell RNA-seq data},\\n  author={Borella, Matteo and Martello, Graziano and Risso, Davide and Romualdi, Chiara},\\n  journal={Bioinformatics},\\n  volume={38},\\n  number={1},\\n  pages={164--172},\\n  year={2022},\\n  publisher={Oxford University Press}\\n}\\n\\n\\n\",\"author_short\":[\"Borella, M.\",\"Martello, G.\",\"Risso, D.\",\"Romualdi, C.\"],\"key\":\"borella2022psinorm\",\"id\":\"borella2022psinorm\",\"bibbaseid\":\"borella-martello-risso-romualdi-psinormascalablenormalizationforsinglecellrnaseqdata-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Agostinis\"],\"firstnames\":[\"Federico\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sales\"],\"firstnames\":[\"Gabriele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"38\",\"number\":\"9\",\"pages\":\"2648–2650\",\"year\":\"2022\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{agostinis2022newwave,\\n  title={NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data},\\n  author={Agostinis, Federico and Romualdi, Chiara and Sales, Gabriele and Risso, Davide},\\n  journal={Bioinformatics},\\n  volume={38},\\n  number={9},\\n  pages={2648--2650},\\n  year={2022},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Agostinis, F.\",\"Romualdi, C.\",\"Sales, G.\",\"Risso, D.\"],\"key\":\"agostinis2022newwave\",\"id\":\"agostinis2022newwave\",\"bibbaseid\":\"agostinis-romualdi-sales-risso-newwaveascalablerbioconductorpackageforthedimensionalityreductionandbatcheffectremovalofsinglecellrnaseqdata-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Yao\"],\"firstnames\":[\"Zizhen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Liu\"],\"firstnames\":[\"Hanqing\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Xie\"],\"firstnames\":[\"Fangming\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fischer\"],\"firstnames\":[\"Stephan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Adkins\"],\"firstnames\":[\"Ricky\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Aldridge\"],\"firstnames\":[\"Andrew\",\"I\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ament\"],\"firstnames\":[\"Seth\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bartlett\"],\"firstnames\":[\"Anna\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Behrens\"],\"firstnames\":[\"M\",\"Margarita\"],\"suffixes\":[]},{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Nature\",\"volume\":\"598\",\"number\":\"7879\",\"pages\":\"103–110\",\"year\":\"2021\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{yao2021transcriptomic,\\n  title={A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex},\\n  author={Yao, Zizhen and Liu, Hanqing and Xie, Fangming and Fischer, Stephan and Adkins, Ricky S and Aldridge, Andrew I and Ament, Seth A and Bartlett, Anna and Behrens, M Margarita and Van den Berge, Koen and others},\\n  journal={Nature},\\n  volume={598},\\n  number={7879},\\n  pages={103--110},\\n  year={2021},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Yao, Z.\",\"Liu, H.\",\"Xie, F.\",\"Fischer, S.\",\"Adkins, R. S\",\"Aldridge, A. I\",\"Ament, S. A\",\"Bartlett, A.\",\"Behrens, M M.\",\"Van den Berge, K.\",\"others\"],\"key\":\"yao2021transcriptomic\",\"id\":\"yao2021transcriptomic\",\"bibbaseid\":\"yao-liu-xie-fischer-adkins-aldridge-ament-bartlett-etal-atranscriptomicandepigenomiccellatlasofthemouseprimarymotorcortex-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Co-clustering of spatially resolved transcriptomic data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Sottosanti\"],\"firstnames\":[\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"The Annals of Applied Statistics\",\"volume\":\"17\",\"number\":\"2\",\"pages\":\"1444\",\"year\":\"2023\",\"bibtex\":\"@article{sottosanti2023co,\\n  title={Co-clustering of spatially resolved transcriptomic data},\\n  author={Sottosanti, Andrea and Risso, Davide},\\n  journal={The Annals of Applied Statistics},\\n  volume={17},\\n  number={2},\\n  pages={1444},\\n  year={2023}\\n}\\n\\n\",\"author_short\":[\"Sottosanti, A.\",\"Risso, D.\"],\"key\":\"sottosanti2023co\",\"id\":\"sottosanti2023co\",\"bibbaseid\":\"sottosanti-risso-coclusteringofspatiallyresolvedtranscriptomicdata-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Modzelewski\"],\"firstnames\":[\"Andrew\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Shao\"],\"firstnames\":[\"Wanqing\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chen\"],\"firstnames\":[\"Jingqi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lee\"],\"firstnames\":[\"Angus\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Qi\"],\"firstnames\":[\"Xin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Noon\"],\"firstnames\":[\"Mackenzie\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tjokro\"],\"firstnames\":[\"Kristy\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sales\"],\"firstnames\":[\"Gabriele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Biton\"],\"firstnames\":[\"Anne\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Anand\"],\"firstnames\":[\"Aparna\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Cell\",\"volume\":\"184\",\"number\":\"22\",\"pages\":\"5541–5558\",\"year\":\"2021\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{modzelewski2021mouse,\\n  title={A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development},\\n  author={Modzelewski, Andrew J and Shao, Wanqing and Chen, Jingqi and Lee, Angus and Qi, Xin and Noon, Mackenzie and Tjokro, Kristy and Sales, Gabriele and Biton, Anne and Anand, Aparna and others},\\n  journal={Cell},\\n  volume={184},\\n  number={22},\\n  pages={5541--5558},\\n  year={2021},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Modzelewski, A. J\",\"Shao, W.\",\"Chen, J.\",\"Lee, A.\",\"Qi, X.\",\"Noon, M.\",\"Tjokro, K.\",\"Sales, G.\",\"Biton, A.\",\"Anand, A.\",\"others\"],\"key\":\"modzelewski2021mouse\",\"id\":\"modzelewski2021mouse\",\"bibbaseid\":\"modzelewski-shao-chen-lee-qi-noon-tjokro-sales-etal-amousespecificretrotransposondrivesaconservedcdk2ap1isoformessentialfordevelopment-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Curated single cell multimodal landmark datasets for R/Bioconductor\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Eckenrode\"],\"firstnames\":[\"Kelly\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ramos\"],\"firstnames\":[\"Marcel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Argelaguet\"],\"firstnames\":[\"Ricard\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vanderaa\"],\"firstnames\":[\"Christophe\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Geistlinger\"],\"firstnames\":[\"Ludwig\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Culhane\"],\"firstnames\":[\"Aedin\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gatto\"],\"firstnames\":[\"Laurent\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Carey\"],\"firstnames\":[\"Vincent\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Morgan\"],\"firstnames\":[\"Martin\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"PLOS Computational Biology\",\"volume\":\"19\",\"number\":\"8\",\"pages\":\"e1011324\",\"year\":\"2023\",\"publisher\":\"Public Library of Science San Francisco, CA USA\",\"bibtex\":\"@article{eckenrode2023curated,\\n  title={Curated single cell multimodal landmark datasets for R/Bioconductor},\\n  author={Eckenrode, Kelly B and Righelli, Dario and Ramos, Marcel and Argelaguet, Ricard and Vanderaa, Christophe and Geistlinger, Ludwig and Culhane, Aedin C and Gatto, Laurent and Carey, Vincent and Morgan, Martin and others},\\n  journal={PLOS Computational Biology},\\n  volume={19},\\n  number={8},\\n  pages={e1011324},\\n  year={2023},\\n  publisher={Public Library of Science San Francisco, CA USA}\\n}\\n\\n\",\"author_short\":[\"Eckenrode, K. B\",\"Righelli, D.\",\"Ramos, M.\",\"Argelaguet, R.\",\"Vanderaa, C.\",\"Geistlinger, L.\",\"Culhane, A. C\",\"Gatto, L.\",\"Carey, V.\",\"Morgan, M.\",\"others\"],\"key\":\"eckenrode2023curated\",\"id\":\"eckenrode2023curated\",\"bibbaseid\":\"eckenrode-righelli-ramos-argelaguet-vanderaa-geistlinger-culhane-gatto-etal-curatedsinglecellmultimodallandmarkdatasetsforrbioconductor-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A multimodal cell census and atlas of the mammalian primary motor cortex\",\"author\":[{\"firstnames\":[\"BRAIN\",\"Initiative\",\"Cell\",\"Census\",\"Network\"],\"propositions\":[],\"lastnames\":[\"(BICCN)\"],\"suffixes\":[]}],\"journal\":\"Nature\",\"volume\":\"598\",\"number\":\"7879\",\"pages\":\"86–102\",\"year\":\"2021\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{brain2021multimodal,\\n  title={A multimodal cell census and atlas of the mammalian primary motor cortex},\\n  author={BRAIN Initiative Cell Census Network (BICCN)},\\n  journal={Nature},\\n  volume={598},\\n  number={7879},\\n  pages={86--102},\\n  year={2021},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"(BICCN), B. I. C. C. N.\"],\"key\":\"brain2021multimodal\",\"id\":\"brain2021multimodal\",\"bibbaseid\":\"biccn-amultimodalcellcensusandatlasofthemammalianprimarymotorcortex-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"To\"],\"firstnames\":[\"Duc-Khanh\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Adimari\"],\"firstnames\":[\"Gianfranco\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"Statistical Methods in Medical Research\",\"volume\":\"31\",\"number\":\"7\",\"pages\":\"1325–1341\",\"year\":\"2022\",\"publisher\":\"SAGE Publications Sage UK: London, England\",\"bibtex\":\"@article{to2022receiver,\\n  title={Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data},\\n  author={To, Duc-Khanh and Adimari, Gianfranco and Chiogna, Monica and Risso, Davide},\\n  journal={Statistical Methods in Medical Research},\\n  volume={31},\\n  number={7},\\n  pages={1325--1341},\\n  year={2022},\\n  publisher={SAGE Publications Sage UK: London, England}\\n}\\n\\n\",\"author_short\":[\"To, D.\",\"Adimari, G.\",\"Chiogna, M.\",\"Risso, D.\"],\"key\":\"to2022receiver\",\"id\":\"to2022receiver\",\"bibbaseid\":\"to-adimari-chiogna-risso-receiveroperatingcharacteristicestimationandthresholdselectioncriteriainthreeclassclassificationproblemsforclustereddata-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Guided structure learning of DAGs for count data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Nguyen\"],\"firstnames\":[\"Thi\",\"Kim\",\"Hue\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Banzato\"],\"firstnames\":[\"Erika\"],\"suffixes\":[]}],\"journal\":\"Statistical Modelling\",\"volume\":\"25\",\"number\":\"4\",\"pages\":\"366–390\",\"year\":\"2025\",\"publisher\":\"Sage Publications Sage India: New Delhi, India\",\"bibtex\":\"@article{nguyen2025guided,\\n  title={Guided structure learning of DAGs for count data},\\n  author={Nguyen, Thi Kim Hue and Chiogna, Monica and Risso, Davide and Banzato, Erika},\\n  journal={Statistical Modelling},\\n  volume={25},\\n  number={4},\\n  pages={366--390},\\n  year={2025},\\n  publisher={Sage Publications Sage India: New Delhi, India}\\n}\\n\\n\",\"author_short\":[\"Nguyen, T. K. H.\",\"Chiogna, M.\",\"Risso, D.\",\"Banzato, E.\"],\"key\":\"nguyen2025guided\",\"id\":\"nguyen2025guided\",\"bibbaseid\":\"nguyen-chiogna-risso-banzato-guidedstructurelearningofdagsforcountdata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Banzato\"],\"firstnames\":[\"Erika\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiogna\"],\"firstnames\":[\"Monica\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Djordjilović\"],\"firstnames\":[\"Vera\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"Statistics & Probability Letters\",\"volume\":\"193\",\"pages\":\"109732\",\"year\":\"2023\",\"publisher\":\"North-Holland\",\"bibtex\":\"@article{banzato2023bartlett,\\n  title={A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models},\\n  author={Banzato, Erika and Chiogna, Monica and Djordjilovi{\\\\'c}, Vera and Risso, Davide},\\n  journal={Statistics \\\\& Probability Letters},\\n  volume={193},\\n  pages={109732},\\n  year={2023},\\n  publisher={North-Holland}\\n}\\n\\n\",\"author_short\":[\"Banzato, E.\",\"Chiogna, M.\",\"Djordjilović, V.\",\"Risso, D.\"],\"key\":\"banzato2023bartlett\",\"id\":\"banzato2023bartlett\",\"bibbaseid\":\"banzato-chiogna-djordjilovi-risso-abartletttypecorrectionforlikelihoodratiotestswithapplicationtotestingequalityofgaussiangraphicalmodels-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"benchdamic: benchmarking of differential abundance methods for microbiome data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Calgaro\"],\"firstnames\":[\"Matteo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vitulo\"],\"firstnames\":[\"Nicola\"],\"suffixes\":[]}],\"journal\":\"Bioinformatics\",\"volume\":\"39\",\"number\":\"1\",\"pages\":\"btac778\",\"year\":\"2023\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{calgaro2023benchdamic,\\n  title={benchdamic: benchmarking of differential abundance methods for microbiome data},\\n  author={Calgaro, Matteo and Romualdi, Chiara and Risso, Davide and Vitulo, Nicola},\\n  journal={Bioinformatics},\\n  volume={39},\\n  number={1},\\n  pages={btac778},\\n  year={2023},\\n  publisher={Oxford University Press}\\n}\\n\\n\\n\",\"author_short\":[\"Calgaro, M.\",\"Romualdi, C.\",\"Risso, D.\",\"Vitulo, N.\"],\"key\":\"calgaro2023benchdamic\",\"id\":\"calgaro2023benchdamic\",\"bibbaseid\":\"calgaro-romualdi-risso-vitulo-benchdamicbenchmarkingofdifferentialabundancemethodsformicrobiomedata-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Designing spatial transcriptomic experiments\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sottosanti\"],\"firstnames\":[\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"Nature Methods\",\"volume\":\"20\",\"number\":\"3\",\"pages\":\"355–356\",\"year\":\"2023\",\"publisher\":\"Nature Publishing Group US New York\",\"bibtex\":\"@article{righelli2023designing,\\n  title={Designing spatial transcriptomic experiments},\\n  author={Righelli, Dario and Sottosanti, Andrea and Risso, Davide},\\n  journal={Nature Methods},\\n  volume={20},\\n  number={3},\\n  pages={355--356},\\n  year={2023},\\n  publisher={Nature Publishing Group US New York}\\n}\\n\\n\",\"author_short\":[\"Righelli, D.\",\"Sottosanti, A.\",\"Risso, D.\"],\"key\":\"righelli2023designing\",\"id\":\"righelli2023designing\",\"bibbaseid\":\"righelli-sottosanti-risso-designingspatialtranscriptomicexperiments-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Structured factorization for single-cell gene expression data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Canale\"],\"firstnames\":[\"Antonio\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Galtarossa\"],\"firstnames\":[\"Luisa\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schiavon\"],\"firstnames\":[\"Lorenzo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Toto\"],\"firstnames\":[\"Giovanni\"],\"suffixes\":[]}],\"journal\":\"Journal of the Royal Statistical Society Series C: Applied Statistics\",\"year\":\"2026\",\"pages\":\"qlag009\",\"bibtex\":\"@article{canale2023structured,\\n  title={Structured factorization for single-cell gene expression data},\\n  author={Canale, Antonio and Galtarossa, Luisa and Risso, Davide and Schiavon, Lorenzo and Toto, Giovanni},\\n  journal={Journal of the Royal Statistical Society Series C: Applied Statistics},\\n  year={2026},\\n  pages={qlag009}\\n}\\n\\n\",\"author_short\":[\"Canale, A.\",\"Galtarossa, L.\",\"Risso, D.\",\"Schiavon, L.\",\"Toto, G.\"],\"key\":\"canale2023structured\",\"id\":\"canale2023structured\",\"bibbaseid\":\"canale-galtarossa-risso-schiavon-toto-structuredfactorizationforsinglecellgeneexpressiondata-2026\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling\",\"author\":[{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bakalar\"],\"firstnames\":[\"Dana\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chou\"],\"firstnames\":[\"Hsin-Jung\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kunda\"],\"firstnames\":[\"Divya\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Street\"],\"firstnames\":[\"Kelly\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Purdom\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dudoit\"],\"firstnames\":[\"Sandrine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ngai\"],\"firstnames\":[\"John\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Heavner\"],\"firstnames\":[\"Whitney\"],\"suffixes\":[]}],\"journal\":\"Stem Cell Reports\",\"volume\":\"21\",\"pages\":\"102778\",\"year\":\"2026\",\"bibtex\":\"@article{van2025latent,\\n  title={A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling},\\n  author={Van den Berge, Koen and Bakalar, Dana and Chou, Hsin-Jung and Kunda, Divya and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine and Ngai, John and Heavner, Whitney},\\n  journal={Stem Cell Reports},\\n  volume={21},\\n  pages={102778},\\n  year={2026}\\n}\\n\\n\",\"author_short\":[\"Van den Berge, K.\",\"Bakalar, D.\",\"Chou, H.\",\"Kunda, D.\",\"Risso, D.\",\"Street, K.\",\"Purdom, E.\",\"Dudoit, S.\",\"Ngai, J.\",\"Heavner, W.\"],\"key\":\"van2025latent\",\"id\":\"van2025latent\",\"bibbaseid\":\"vandenberge-bakalar-chou-kunda-risso-street-purdom-dudoit-etal-alatentactivatedolfactorystemcellstaterevealedbysinglecelltranscriptomicandepigenomicprofiling-2026\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Differential detection workflows for multi-sample single-cell RNA-seq data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Gilis\"],\"firstnames\":[\"Jeroen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Perin\"],\"firstnames\":[\"Laura\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Malfait\"],\"firstnames\":[\"Milan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Crowell\"],\"firstnames\":[\"Helena\",\"L\"],\"suffixes\":[]},{\"propositions\":[\"Van\",\"den\"],\"lastnames\":[\"Berge\"],\"firstnames\":[\"Koen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Assefa\"],\"firstnames\":[\"Alemu\",\"Takele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Verbist\"],\"firstnames\":[\"Bie\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clement\"],\"firstnames\":[\"Lieven\"],\"suffixes\":[]}],\"journal\":\"BMC Genomics\",\"volume\":\"26\",\"number\":\"1\",\"pages\":\"1–20\",\"year\":\"2025\",\"publisher\":\"BioMed Central\",\"bibtex\":\"@article{gilis2025differential,\\n  title={Differential detection workflows for multi-sample single-cell RNA-seq data},\\n  author={Gilis, Jeroen and Perin, Laura and Malfait, Milan and Crowell, Helena L and Van den Berge, Koen and Assefa, Alemu Takele and Verbist, Bie and Risso, Davide and Clement, Lieven},\\n  journal={BMC Genomics},\\n  volume={26},\\n  number={1},\\n  pages={1--20},\\n  year={2025},\\n  publisher={BioMed Central}\\n}\\n\\n\",\"author_short\":[\"Gilis, J.\",\"Perin, L.\",\"Malfait, M.\",\"Crowell, H. L\",\"Van den Berge, K.\",\"Assefa, A. T.\",\"Verbist, B.\",\"Risso, D.\",\"Clement, L.\"],\"key\":\"gilis2025differential\",\"id\":\"gilis2025differential\",\"bibbaseid\":\"gilis-perin-malfait-crowell-vandenberge-assefa-verbist-risso-etal-differentialdetectionworkflowsformultisamplesinglecellrnaseqdata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Ford\"],\"firstnames\":[\"Kaitlyn\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Zuin\"],\"firstnames\":[\"Elena\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Medina\"],\"firstnames\":[\"Elizabeth\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Schoch\"],\"firstnames\":[\"Hannah\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Singletary\"],\"firstnames\":[\"Kristan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Muheim\"],\"firstnames\":[\"Christine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Frank\"],\"firstnames\":[\"Marcos\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hicks\"],\"firstnames\":[\"Stephanie\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"iScience\",\"volume\":\"27\",\"number\":\"9\",\"year\":\"2024\",\"publisher\":\"Elsevier\",\"bibtex\":\"@article{ford2024global,\\n  title={A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex},\\n  author={Ford, Kaitlyn and Zuin, Elena and Righelli, Dario and Medina, Elizabeth and Schoch, Hannah and Singletary, Kristan and Muheim, Christine and Frank, Marcos G and Hicks, Stephanie C and Risso, Davide and others},\\n  journal={iScience},\\n  volume={27},\\n  number={9},\\n  year={2024},\\n  publisher={Elsevier}\\n}\\n\\n\",\"author_short\":[\"Ford, K.\",\"Zuin, E.\",\"Righelli, D.\",\"Medina, E.\",\"Schoch, H.\",\"Singletary, K.\",\"Muheim, C.\",\"Frank, M. G\",\"Hicks, S. C\",\"Risso, D.\",\"others\"],\"key\":\"ford2024global\",\"id\":\"ford2024global\",\"bibbaseid\":\"ford-zuin-righelli-medina-schoch-singletary-muheim-frank-etal-aglobaltranscriptionalatlasoftheeffectofacutesleepdeprivationinthemousefrontalcortex-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Pirrotta\"],\"firstnames\":[\"Stefania\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Masatti\"],\"firstnames\":[\"Laura\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bortolato\"],\"firstnames\":[\"Anna\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Corrà\"],\"firstnames\":[\"Anna\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pedrini\"],\"firstnames\":[\"Fabiola\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Aere\"],\"firstnames\":[\"Martina\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Esposito\"],\"firstnames\":[\"Giovanni\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Martini\"],\"firstnames\":[\"Paolo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"NAR Genomics and Bioinformatics\",\"volume\":\"6\",\"number\":\"4\",\"pages\":\"lqae138\",\"year\":\"2024\",\"publisher\":\"Oxford University Press\",\"bibtex\":\"@article{pirrotta2024exploring,\\n  title={Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package},\\n  author={Pirrotta, Stefania and Masatti, Laura and Bortolato, Anna and Corr{\\\\`a}, Anna and Pedrini, Fabiola and Aere, Martina and Esposito, Giovanni and Martini, Paolo and Risso, Davide and Romualdi, Chiara and others},\\n  journal={NAR Genomics and Bioinformatics},\\n  volume={6},\\n  number={4},\\n  pages={lqae138},\\n  year={2024},\\n  publisher={Oxford University Press}\\n}\\n\\n\",\"author_short\":[\"Pirrotta, S.\",\"Masatti, L.\",\"Bortolato, A.\",\"Corrà, A.\",\"Pedrini, F.\",\"Aere, M.\",\"Esposito, G.\",\"Martini, P.\",\"Risso, D.\",\"Romualdi, C.\",\"others\"],\"key\":\"pirrotta2024exploring\",\"id\":\"pirrotta2024exploring\",\"bibbaseid\":\"pirrotta-masatti-bortolato-corr-pedrini-aere-esposito-martini-etal-exploringpubliccancergeneexpressionsignaturesacrossbulksinglecellandspatialtranscriptomicsdatawithsignifinderbioconductorpackage-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Conformal inference for cell type annotation with graph-structured constraints\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Corbetta\"],\"firstnames\":[\"Daniela\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Finos\"],\"firstnames\":[\"Livio\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Geistlinger\"],\"firstnames\":[\"Ludwig\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"arXiv preprint arXiv:2410.23786\",\"year\":\"2024\",\"bibtex\":\"@article{corbetta2024conformal,\\n  title={Conformal inference for cell type annotation with graph-structured constraints},\\n  author={Corbetta, Daniela and Finos, Livio and Geistlinger, Ludwig and Risso, Davide},\\n  journal={arXiv preprint arXiv:2410.23786},\\n  year={2024}\\n}\\n\\n\",\"author_short\":[\"Corbetta, D.\",\"Finos, L.\",\"Geistlinger, L.\",\"Risso, D.\"],\"key\":\"corbetta2024conformal\",\"id\":\"corbetta2024conformal\",\"bibbaseid\":\"corbetta-finos-geistlinger-risso-conformalinferenceforcelltypeannotationwithgraphstructuredconstraints-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Stochastic gradient descent estimation of generalized matrix factorization models with application to single-cell RNA sequencing data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Castiglione\"],\"firstnames\":[\"Cristian\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Segers\"],\"firstnames\":[\"Alexandre\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clement\"],\"firstnames\":[\"Lieven\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"arXiv preprint arXiv:2412.20509\",\"year\":\"2024\",\"bibtex\":\"@article{castiglione2024stochastic,\\n  title={Stochastic gradient descent estimation of generalized matrix factorization models with application to single-cell RNA sequencing data},\\n  author={Castiglione, Cristian and Segers, Alexandre and Clement, Lieven and Risso, Davide},\\n  journal={arXiv preprint arXiv:2412.20509},\\n  year={2024}\\n}\\n\\n\",\"author_short\":[\"Castiglione, C.\",\"Segers, A.\",\"Clement, L.\",\"Risso, D.\"],\"key\":\"castiglione2024stochastic\",\"id\":\"castiglione2024stochastic\",\"bibbaseid\":\"castiglione-segers-clement-risso-stochasticgradientdescentestimationofgeneralizedmatrixfactorizationmodelswithapplicationtosinglecellrnasequencingdata-2024\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"saseR: Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Segers\"],\"firstnames\":[\"Alexandre\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gilis\"],\"firstnames\":[\"Jeroen\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Van\",\"Heetvelde\"],\"firstnames\":[\"Mattias\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"De\",\"Baere\"],\"firstnames\":[\"Elfride\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clement\"],\"firstnames\":[\"Lieven\"],\"suffixes\":[]}],\"journal\":\"Genome Biology\",\"volume\":\"27\",\"pages\":\"103\",\"year\":\"2026\",\"bibtex\":\"@article{segers2024saser,\\n  title={saseR: Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval},\\n  author={Segers, Alexandre and Gilis, Jeroen and Van Heetvelde, Mattias and Risso, Davide and De Baere, Elfride and Clement, Lieven},\\n  journal={Genome Biology},\\n  volume={27},\\n  pages={103},\\n  year={2026}\\n}\\n\\n\",\"author_short\":[\"Segers, A.\",\"Gilis, J.\",\"Van Heetvelde, M.\",\"Risso, D.\",\"De Baere, E.\",\"Clement, L.\"],\"key\":\"segers2024saser\",\"id\":\"segers2024saser\",\"bibbaseid\":\"segers-gilis-vanheetvelde-risso-debaere-clement-saserjugglingoffsetsunlocksrnaseqtoolsforfastandscalabledifferentialusageaberrantsplicingandexpressionretrieval-2026\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Sottosanti\"],\"firstnames\":[\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Denti\"],\"firstnames\":[\"Francesco\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Galimberti\"],\"firstnames\":[\"Stefania\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Capitoli\"],\"firstnames\":[\"Giulia\"],\"suffixes\":[]}],\"journal\":\"Biometrical Journal\",\"volume\":\"67\",\"number\":\"2\",\"pages\":\"e70031\",\"year\":\"2025\",\"bibtex\":\"@article{sottosanti2025spatially,\\n  title={Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data},\\n  author={Sottosanti, Andrea and Denti, Francesco and Galimberti, Stefania and Risso, Davide and Capitoli, Giulia},\\n  journal={Biometrical Journal},\\n  volume={67},\\n  number={2},\\n  pages={e70031},\\n  year={2025}\\n}\\n\\n\",\"author_short\":[\"Sottosanti, A.\",\"Denti, F.\",\"Galimberti, S.\",\"Risso, D.\",\"Capitoli, G.\"],\"key\":\"sottosanti2025spatially\",\"id\":\"sottosanti2025spatially\",\"bibbaseid\":\"sottosanti-denti-galimberti-risso-capitoli-spatiallyinformednonnegativematrixtrifactorizationforcoclusteringmassspectrometrydata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk-and single cell proteomics data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Segers\"],\"firstnames\":[\"Alexandre\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Castiglione\"],\"firstnames\":[\"Cristian\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vanderaa\"],\"firstnames\":[\"Christophe\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Martens\"],\"firstnames\":[\"Lennart\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Clement\"],\"firstnames\":[\"Lieven\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"year\":\"2025\",\"bibtex\":\"@article{segers2025omicsgmf,\\n  title={omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk-and single cell proteomics data},\\n  author={Segers, Alexandre and Castiglione, Cristian and Vanderaa, Christophe and Martens, Lennart and Risso, Davide and Clement, Lieven},\\n  journal={bioRxiv},\\n  year={2025}\\n}\\n\\n\",\"author_short\":[\"Segers, A.\",\"Castiglione, C.\",\"Vanderaa, C.\",\"Martens, L.\",\"Risso, D.\",\"Clement, L.\"],\"key\":\"segers2025omicsgmf\",\"id\":\"segers2025omicsgmf\",\"bibbaseid\":\"segers-castiglione-vanderaa-martens-risso-clement-omicsgmfamultitoolfordimensionalityreductionbatchcorrectionandimputationappliedtobulkandsinglecellproteomicsdata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Bhinder\"],\"firstnames\":[\"Bhavneet\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Friedl\"],\"firstnames\":[\"Verena\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sethuraman\"],\"firstnames\":[\"Sunantha\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Chiotti\"],\"firstnames\":[\"Kami\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mashl\"],\"firstnames\":[\"R\",\"Jay\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ellrott\"],\"firstnames\":[\"Kyle\",\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lee\"],\"firstnames\":[\"Jordan\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wong\"],\"firstnames\":[\"Christopher\",\"K\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gyan\"],\"firstnames\":[\"Kofi\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Scientific Reports\",\"volume\":\"15\",\"number\":\"1\",\"pages\":\"23921\",\"year\":\"2025\",\"publisher\":\"Nature Publishing Group UK London\",\"bibtex\":\"@article{bhinder2025pan,\\n  title={Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles},\\n  author={Bhinder, Bhavneet and Friedl, Verena and Sethuraman, Sunantha and Risso, Davide and Chiotti, Kami E and Mashl, R Jay and Ellrott, Kyle P and Lee, Jordan A and Wong, Christopher K and Gyan, Kofi and others},\\n  journal={Scientific Reports},\\n  volume={15},\\n  number={1},\\n  pages={23921},\\n  year={2025},\\n  publisher={Nature Publishing Group UK London}\\n}\\n\\n\",\"author_short\":[\"Bhinder, B.\",\"Friedl, V.\",\"Sethuraman, S.\",\"Risso, D.\",\"Chiotti, K. E\",\"Mashl, R J.\",\"Ellrott, K. P\",\"Lee, J. A\",\"Wong, C. K\",\"Gyan, K.\",\"others\"],\"key\":\"bhinder2025pan\",\"id\":\"bhinder2025pan\",\"bibbaseid\":\"bhinder-friedl-sethuraman-risso-chiotti-mashl-ellrott-lee-etal-pancancerimmuneandstromaldeconvolutionpredictsclinicaloutcomesandmutationprofiles-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Ramos\"],\"firstnames\":[\"Marcel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Shepherd\"],\"firstnames\":[\"Lori\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sheffield\"],\"firstnames\":[\"Nathan\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mahmoud\"],\"firstnames\":[\"Alexandru\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pagès\"],\"firstnames\":[\"Hervé\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wokaty\"],\"firstnames\":[\"Andres\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Davis\"],\"firstnames\":[\"Sean\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Oh\"],\"firstnames\":[\"Sehyun\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"Cancer Bioinformatics\",\"pages\":\"1–46\",\"year\":\"2025\",\"publisher\":\"Springer US New York, NY\",\"bibtex\":\"@article{ramos2012bioconductor,\\n  title={Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer},\\n  author={Ramos, Marcel and Shepherd, Lori and Sheffield, Nathan C and Mahmoud, Alexandru and Pag{\\\\`e}s, Herv{\\\\'e} and Wokaty, Andres and Righelli, Dario and Risso, Davide and Davis, Sean and Oh, Sehyun and others},\\n  journal={Cancer Bioinformatics},\\n  pages={1--46},\\n  year={2025},\\n  publisher={Springer US New York, NY}\\n}\\n\\n\\n\",\"author_short\":[\"Ramos, M.\",\"Shepherd, L.\",\"Sheffield, N. C\",\"Mahmoud, A.\",\"Pagès, H.\",\"Wokaty, A.\",\"Righelli, D.\",\"Risso, D.\",\"Davis, S.\",\"Oh, S.\",\"others\"],\"key\":\"ramos2012bioconductor\",\"id\":\"ramos2012bioconductor\",\"bibbaseid\":\"ramos-shepherd-sheffield-mahmoud-pags-wokaty-righelli-risso-etal-bioconductorscomputationalecosystemforgenomicdatascienceincancer-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Sottosanti\"],\"firstnames\":[\"Andrea\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Denti\"],\"firstnames\":[\"Francesco\"],\"suffixes\":[]}],\"journal\":\"Journal of Classification\",\"pages\":\"1–23\",\"year\":\"2025\",\"publisher\":\"Springer US\",\"bibtex\":\"@article{sottosanti2025spatially,\\n  title={Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data},\\n  author={Sottosanti, Andrea and Risso, Davide and Denti, Francesco},\\n  journal={Journal of Classification},\\n  pages={1--23},\\n  year={2025},\\n  publisher={Springer US}\\n}\\n\\n\",\"author_short\":[\"Sottosanti, A.\",\"Risso, D.\",\"Denti, F.\"],\"key\":\"sottosanti2025spatially-1\",\"id\":\"sottosanti2025spatially-1\",\"bibbaseid\":\"sottosanti-risso-denti-spatiallyregularizedgaussianmixturesforclusteringspatialtranscriptomicdata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Benchmarking large-scale single-cell RNA-seq analysis\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Billato\"],\"firstnames\":[\"Ilaria\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Pages\"],\"firstnames\":[\"Herve\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Carey\"],\"firstnames\":[\"Vince\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Waldron\"],\"firstnames\":[\"Levi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sales\"],\"firstnames\":[\"Gabriele\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romualdi\"],\"firstnames\":[\"Chiara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"pages\":\"2025–10\",\"year\":\"2025\",\"publisher\":\"Cold Spring Harbor Laboratory\",\"bibtex\":\"@article{billato2025benchmarking,\\n  title={Benchmarking large-scale single-cell RNA-seq analysis},\\n  author={Billato, Ilaria and Pages, Herve and Carey, Vince and Waldron, Levi and Sales, Gabriele and Romualdi, Chiara and Risso, Davide},\\n  journal={bioRxiv},\\n  pages={2025--10},\\n  year={2025},\\n  publisher={Cold Spring Harbor Laboratory}\\n}\\n\\n\",\"author_short\":[\"Billato, I.\",\"Pages, H.\",\"Carey, V.\",\"Waldron, L.\",\"Sales, G.\",\"Romualdi, C.\",\"Risso, D.\"],\"key\":\"billato2025benchmarking\",\"id\":\"billato2025benchmarking\",\"bibbaseid\":\"billato-pages-carey-waldron-sales-romualdi-risso-benchmarkinglargescalesinglecellrnaseqanalysis-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Orchestrating Spatial Transcriptomics Analysis with Bioconductor\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Crowell\"],\"firstnames\":[\"Helena\",\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dong\"],\"firstnames\":[\"Yixing\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Billato\"],\"firstnames\":[\"Ilaria\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Cai\"],\"firstnames\":[\"Peiying\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Emons\"],\"firstnames\":[\"Martin\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gunz\"],\"firstnames\":[\"Samuel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Guo\"],\"firstnames\":[\"Boyi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Li\"],\"firstnames\":[\"Mengbo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mahmoud\"],\"firstnames\":[\"Alexandru\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Manukyan\"],\"firstnames\":[\"Artür\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"others\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"pages\":\"2025–11\",\"year\":\"2025\",\"publisher\":\"Cold Spring Harbor Laboratory\",\"bibtex\":\"@article{crowell2025orchestrating,\\n  title={Orchestrating Spatial Transcriptomics Analysis with Bioconductor},\\n  author={Crowell, Helena L and Dong, Yixing and Billato, Ilaria and Cai, Peiying and Emons, Martin and Gunz, Samuel and Guo, Boyi and Li, Mengbo and Mahmoud, Alexandru and Manukyan, Art{\\\\\\\"u}r and others},\\n  journal={bioRxiv},\\n  pages={2025--11},\\n  year={2025},\\n  publisher={Cold Spring Harbor Laboratory}\\n}\\n\\n\",\"author_short\":[\"Crowell, H. L\",\"Dong, Y.\",\"Billato, I.\",\"Cai, P.\",\"Emons, M.\",\"Gunz, S.\",\"Guo, B.\",\"Li, M.\",\"Mahmoud, A.\",\"Manukyan, A.\",\"others\"],\"key\":\"crowell2025orchestrating\",\"id\":\"crowell2025orchestrating\",\"bibbaseid\":\"crowell-dong-billato-cai-emons-gunz-guo-li-etal-orchestratingspatialtranscriptomicsanalysiswithbioconductor-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"SpaceTrooper: a quality control framework for imaging-based spatial omics data\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Banzi\"],\"firstnames\":[\"Benedetta\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Righelli\"],\"firstnames\":[\"Dario\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Marchionni\"],\"firstnames\":[\"Matteo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Romano\"],\"firstnames\":[\"Oriana\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Forcato\"],\"firstnames\":[\"Mattia\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Risso\"],\"firstnames\":[\"Davide\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bicciato\"],\"firstnames\":[\"Silvio\"],\"suffixes\":[]}],\"journal\":\"bioRxiv\",\"pages\":\"2025–12\",\"year\":\"2025\",\"publisher\":\"Cold Spring Harbor Laboratory\",\"bibtex\":\"@article{banzi2025spacetrooper,\\n  title={SpaceTrooper: a quality control framework for imaging-based spatial omics data},\\n  author={Banzi, Benedetta and Righelli, Dario and Marchionni, Matteo and Romano, Oriana and Forcato, Mattia and Risso, Davide and Bicciato, Silvio},\\n  journal={bioRxiv},\\n  pages={2025--12},\\n  year={2025},\\n  publisher={Cold Spring Harbor Laboratory}\\n}\\n\",\"author_short\":[\"Banzi, B.\",\"Righelli, D.\",\"Marchionni, M.\",\"Romano, O.\",\"Forcato, M.\",\"Risso, D.\",\"Bicciato, S.\"],\"key\":\"banzi2025spacetrooper\",\"id\":\"banzi2025spacetrooper\",\"bibbaseid\":\"banzi-righelli-marchionni-romano-forcato-risso-bicciato-spacetrooperaqualitycontrolframeworkforimagingbasedspatialomicsdata-2025\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"}],\n      metadata: {\"authorlinks\":{}},\n      ownerID: undefined\n    };\n  </script>\n\n  <script type=\"text/javascript\">\n  var site$;\n  if (typeof $ != 'undefined') {\n    console.log('existing jquery: storing and then restoring');\n    site$ = $;\n    $ = null;\n  }\n  </script>\n\n  <script src=\"https://ajax.googleapis.com/ajax/libs/jquery/2.2.4/jquery.min.js\">\n  </script>\n  <script type=\"text/javascript\">\n  if (site$) {\n    console.log('existing jquery: avoiding conflict and restoring');\n    bb$ = $.noConflict(true);\n    $ = site$;\n  } else {\n    bb$ = $;\n  }\n  </script>\n\n  <script src=\"//bibbase.org/js/bibbase.min.js\"\n          type=\"text/javascript\">\n  </script>\n\n  <script type=\"text/javascript\"\n          src=\"https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML\">\n  </script>\n  <script type=\"text/x-mathjax-config\">\n    MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\\\(','\\\\)']]},\n                        skipTags: [\"body\"],\n                        processClass: \"bibbase_paper\"});\n  </script>\n\n  <style>\n  @media print {\n    .dontprint {\n        display: none !important;\n    }\n\n  .bibbase_group {\n    background-color: #E0E0E0;\n    font-style: italic;\n    font-size: larger;\n    text-shadow: 0px 0px 3px #FFFFFF;\n    border-radius: 4px 4px 4px 4px;\n    -moz-border-radius: 4px 4px 4px 4px;\n    -webkit-border-radius: 4px;\n    padding: 5px 40px 5px;\n    margin-top: 10px;\n    margin-bottom: 5px;\n    cursor: pointer;\n  }\n\n  .bibbase_paper {\n    margin-bottom: 5px;\n  }\n\n  }\n  </style>\n\n  \n  <div style=\"float: right; margin-right: 10px; margin-top: 10px; text-align: right; font-size: 12px\">\n    generated by\n    <a href=\"//bibbase.org\"\n       onclick=\"trackOutboundLink('bibbase', 'logo clicked', window.location.href, '//bibbase.org'); return false;\">\n      <img src=\"//bibbase.org/img/logo.svg\"\n           style=\"vertical-align: middle; margin-left: 3px; height: 16px;\"/\n           alt=\"bibbase.org\"\n           title=\"BibBase – The easiest way to maintain your publications page.\"\n        ></a>\n    \n  </div>\n  \n\n  <div id=\"bibbase_header\" class=\"dontprint\" style=\"\">\n\n    <ul class=\"nav nav-pills\" style=\"margin: 0px;\">\n\n      <li class=\"dropdown\" id=\"groupby_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         aria-label=\"group-by menu toggle\"\n         href=\"#\">\n          Group by\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li class=\"groupby year\"><a onclick=\"groupby('year')\">\n            Year</a>\n        </li>\n        <li class=\"groupby author\"><a onclick=\"groupby('author_short')\">\n            Author</a>\n        </li>\n        <li class=\"groupby type\"><a onclick=\"groupby('type')\">\n            Type</a>\n        </li>\n        <li class=\"groupby keyword\"><a onclick=\"groupby('keyword')\">\n            Keyword</a>\n        </li>\n        <li class=\"groupby downloads\"><a onclick=\"groupby('downloads')\">\n            Downloads</a>\n        </li>\n      </ul>\n      </li>\n\n\n      <li class=\"dropdown\" id=\"menu_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         aria-label=\"other options menu toggle\"\n         href=\"#\" alt=\"controls\">\n          <i class=\"fa fa-reorder\" alt=\"controls\"></i>\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li>\n          <a onclick=\"toggleAll()\">\n            <i class=\"fa fa-chevron-down fa-fw\"></i> Expand/Collapse All\n          </a>\n        </li>\n        <li>\n          <a download=\"KkByu8uHcEr482MkC\" href=\"data:text/bibtex;base64,@article{bisognin2009madman,
  title={A-MADMAN: annotation-based microarray data meta-analysis tool},
  author={Bisognin, Andrea and Coppe, Alessandro and Ferrari, Francesco and Risso, Davide and Romualdi, Chiara and Bicciato, Silvio and Bortoluzzi, Stefania},
  journal={BMC Bioinformatics},
  volume={10},
  number={1},
  pages={201},
  year={2009},
  publisher={BioMed Central London}
}



@article{chiogna2009comparison,
  title={A comparison on effects of normalisations in the detection of differentially expressed genes},
  author={Chiogna, Monica and Massa, Maria Sofia and Risso, Davide and Romualdi, Chiara},
  journal={BMC Bioinformatics},
  volume={10},
  number={1},
  pages={61},
  year={2009},
  publisher={BioMed Central London}
}



@article{risso2009modified,
  title={A modified LOESS normalization applied to microRNA arrays: a comparative evaluation},
  author={Risso, Davide and Massa, Maria Sofia and Chiogna, Monica and Romualdi, Chiara},
  journal={Bioinformatics},
  volume={25},
  number={20},
  pages={2685--2691},
  year={2009},
  publisher={Oxford University Press}
}



@article{de2011novel,
  title={A novel approach to the clustering of microarray data via nonparametric density estimation},
  author={De Bin, Riccardo and Risso, Davide},
  journal={BMC Bioinformatics},
  volume={12},
  number={1},
  pages={49},
  year={2011},
  publisher={BioMed Central Ltd}
}



@article{martini2011statistical,
  title={Statistical test of expression pattern (stepath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies},
  author={Martini, Paolo and Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Lanfranchi, Gerolamo and Cagnin, Stefano},
  journal={BMC Bioinformatics},
  volume={12},
  number={1},
  pages={92},
  year={2011},
  publisher={BioMed Central London}
}



@incollection{risso2012hierarchical,
  title={A hierarchical Bayesian model for RNA-Seq data},
  author={Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Chiogna, Monica},
  booktitle={Complex Models and Computational Methods in Statistics},
  pages={215--227},
  year={2012},
  publisher={Springer Milan Milano}
}



@article{risso2011gc,
  title={GC-content normalization for RNA-Seq data},
  author={Risso, Davide and Schwartz, Katja and Sherlock, Gavin and Dudoit, Sandrine},
  journal={BMC Bioinformatics},
  volume={12},
  number={1},
  pages={480},
  year={2011},
  publisher={BioMed Central London}
}



@article{ferreira2014silencing,
  title={Silencing of odorant receptor genes by G protein $\beta$$\gamma$ signaling ensures the expression of one odorant receptor per olfactory sensory neuron},
  author={Ferreira, Todd and Wilson, Sarah R and Choi, Yoon Gi and Risso, Davide and Dudoit, Sandrine and Speed, Terence P and Ngai, John},
  journal={Neuron},
  volume={81},
  number={4},
  pages={847--859},
  year={2014},
  publisher={Elsevier}
}



@incollection{risso2014role,
  title={The role of spike-in standards in the normalization of RNA-seq},
  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},
  booktitle={Statistical Analysis of Next Generation Sequencing Data},
  pages={169--190},
  year={2014},
  publisher={Springer International Publishing Cham}
}



@article{risso2014normalization,
  title={Normalization of RNA-seq data using factor analysis of control genes or samples},
  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},
  journal={Nature Biotechnology},
  volume={32},
  number={9},
  pages={896--902},
  year={2014},
  publisher={Nature Publishing Group}
}



@article{peixoto2015data,
  title={How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets},
  author={Peixoto, Lucia and Risso, Davide and Poplawski, Shane G and Wimmer, Mathieu E and Speed, Terence P and Wood, Marcelo A and Abel, Ted},
  journal={Nucleic Acids Research},
  volume={43},
  number={16},
  pages={7664--7674},
  year={2015},
  publisher={Oxford University Press}
}



@article{revelli2016comparison,
  title={Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience},
  author={Revelli, Matteo and Paparo, Francesco and Bacigalupo, Lorenzo and Puppo, Cristina and Furnari, Manuele and Conforti, Cristina and Binda, Gian Andrea and Savarino, Edoardo and Risso, Davide and Rollandi, Gian Andrea},
  journal={Clinical Imaging},
  volume={40},
  number={1},
  pages={57--62},
  year={2016},
  publisher={Elsevier}
}



@article{poplawski2016contextual,
  title={Contextual fear conditioning induces differential alternative splicing},
  author={Poplawski, Shane G and Peixoto, Lucia and Porcari, Giulia S and Wimmer, Mathieu E and McNally, Anna G and Mizuno, Keiko and Giese, K Peter and Chatterjee, Snehajyoti and Koberstein, John N and Risso, Davide and others},
  journal={Neurobiology of Learning and Memory},
  volume={134},
  pages={221--235},
  year={2016},
  publisher={Academic Press}
}



@article{gerstner2016removal,
  title={Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex},
  author={Gerstner, Jason R and Koberstein, John N and Watson, Adam J and Zapero, Nikolai and Risso, Davide and Speed, Terence P and Frank, Marcos G and Peixoto, Lucia},
  journal={BMC Genomics},
  volume={17},
  number={Suppl 8},
  pages={727},
  year={2016},
  publisher={BioMed Central London}
}



@article{choi2017deficiency,
  title={Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells},
  author={Choi, Yong Jin and Lin, Chao-Po and Risso, Davide and Chen, Sean and Kim, Thomas Aquinas and Tan, Meng How and Li, Jin Billy and Wu, Yalei and Chen, Caifu and Xuan, Zhenyu and others},
  journal={Science},
  volume={355},
  number={6325},
  pages={eaag1927},
  year={2017},
  publisher={American Association for the Advancement of Science}
}



@article{street2018slingshot,
  title={Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics},
  author={Street, Kelly and Risso, Davide and Fletcher, Russell B and Das, Diya and Ngai, John and Yosef, Nir and Purdom, Elizabeth and Dudoit, Sandrine},
  journal={BMC Genomics},
  volume={19},
  number={1},
  pages={477},
  year={2018},
  publisher={BioMed Central London}
}



@article{fletcher2017deconstructing,
  title={Deconstructing olfactory stem cell trajectories at single-cell resolution},
  author={Fletcher, Russell B and Das, Diya and Gadye, Levi and Street, Kelly N and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Flores, Quetzal and Choi, Yoon Gi and Yosef, Nir and others},
  journal={Cell Stem Cell},
  volume={20},
  number={6},
  pages={817--830},
  year={2017},
  publisher={Elsevier}
}



@article{vallejos2017normalizing,
  title={Normalizing single-cell RNA sequencing data: challenges and opportunities},
  author={Vallejos, Catalina A and Risso, Davide and Scialdone, Antonio and Dudoit, Sandrine and Marioni, John C},
  journal={Nature Methods},
  volume={14},
  number={6},
  pages={565--571},
  year={2017},
  publisher={Nature Publishing Group US New York}
}



@article{perraudeau2017bioconductor,
  title={Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference},
  author={Perraudeau, Fanny and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine},
  journal={F1000Research},
  volume={6},
  pages={1158},
  year={2017}
}



@article{gadye2017injury,
  title={Injury activates transient olfactory stem cell states with diverse lineage capacities},
  author={Gadye, Levi and Das, Diya and Sanchez, Michael A and Street, Kelly and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Choi, Yoon Gi and Yosef, Nir and Purdom, Elizabeth and others},
  journal={Cell Stem Cell},
  volume={21},
  number={6},
  pages={775--790},
  year={2017},
  publisher={Elsevier}
}



@article{cole2019performance,
  title={Performance assessment and selection of normalization procedures for single-cell RNA-seq},
  author={Cole, Michael B and Risso, Davide and Wagner, Allon and DeTomaso, David and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine and Yosef, Nir},
  journal={Cell Systems},
  volume={8},
  number={4},
  pages={315--328},
  year={2019},
  publisher={Elsevier}
}



@article{koberstein2018learning,
  title={Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism},
  author={Koberstein, John N and Poplawski, Shane G and Wimmer, Mathieu E and Porcari, Giulia and Kao, Charlly and Gomes, Bruce and Risso, Davide and Hakonarson, Hakon and Zhang, Nancy R and Schultz, Robert T and others},
  journal={Science Signaling},
  volume={11},
  number={513},
  pages={eaan6500},
  year={2018},
  publisher={American Association for the Advancement of Science}
}



@article{risso2018general,
  title={A general and flexible method for signal extraction from single-cell RNA-seq data},
  author={Risso, Davide and Perraudeau, Fanny and Gribkova, Svetlana and Dudoit, Sandrine and Vert, Jean-Philippe},
  journal={Nature Communications},
  volume={9},
  number={1},
  pages={284},
  year={2018},
  publisher={Nature Publishing Group UK London}
}



@article{risso2018clusterexperiment,
  title={clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets},
  author={Risso, Davide and Purvis, Liam and Fletcher, Russell B and Das, Diya and Ngai, John and Dudoit, Sandrine and Purdom, Elizabeth},
  journal={PLoS Computational Biology},
  volume={14},
  number={9},
  pages={e1006378},
  year={2018},
  publisher={Public Library of Science}
}



@article{kramer2018combinatorial,
  title={Combinatorial expression of Grp and Neurod6 defines dopamine neuron populations with distinct projection patterns and disease vulnerability},
  author={Kramer, Daniel J and Risso, Davide and Kosillo, Polina and Ngai, John and Bateup, Helen S},
  journal={eNeuro},
  volume={5},
  number={3},
  year={2018},
  publisher={Society for Neuroscience}
}



@article{van2018observation,
  title={Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications},
  author={Van den Berge, Koen and Perraudeau, Fanny and Soneson, Charlotte and Love, Michael I. and Risso, Davide and Vert, Jean-Philippe and Robinson, Mark D. and Dudoit, Sandrine and Clement, Lieven},
  journal={Genome Biology},
  volume={19},
  year={2018}
}



@article{ingiosi2019shank3,
  title={Shank3 modulates sleep and expression of circadian transcription factors},
  author={Ingiosi, Ashley M and Schoch, Hannah and Wintler, Taylor and Singletary, Kristan G and Righelli, Dario and Roser, Leandro G and Medina, Elizabeth and Risso, Davide and Frank, Marcos G and Peixoto, Lucia},
  journal={Elife},
  volume={8},
  pages={e42819},
  year={2019},
  publisher={eLife Sciences Publications, Ltd}
}



@techreport{righelli2018differential,
  title={Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis},
  author={Righelli, Dario and Koberstein, John and Zhang, Nancy and Angelini, Claudia and Peixoto, Lucia and Risso, Davide},
  year={2018},
  institution={PeerJ Preprints}
}



@article{naka2019complementary,
  title={Complementary networks of cortical somatostatin interneurons enforce layer specific control},
  author={Naka, Alexander and Veit, Julia and Shababo, Ben and Chance, Rebecca K and Risso, Davide and Stafford, David and Snyder, Benjamin and Egladyous, Andrew and Chu, Desiree and Sridharan, Savitha and others},
  journal={Elife},
  volume={8},
  pages={e43696},
  year={2019},
  publisher={eLife Sciences Publications, Ltd}
}



@article{amezquita2020orchestrating,
  title={Orchestrating single-cell analysis with Bioconductor},
  author={Amezquita, Robert A and Lun, Aaron TL and Becht, Etienne and Carey, Vince J and Carpp, Lindsay N and Geistlinger, Ludwig and Marini, Federico and Rue-Albrecht, Kevin and Risso, Davide and Soneson, Charlotte and others},
  journal={Nature Methods},
  volume={17},
  number={2},
  pages={137--145},
  year={2020},
  publisher={Nature Publishing Group US New York}
}



@article{gaiti2019epigenetic,
  title={Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia},
  author={Gaiti, Federico and Chaligne, Ronan and Gu, Hongcang and Brand, Ryan M and Kothen-Hill, Steven and Schulman, Rafael C and Grigorev, Kirill and Risso, Davide and Kim, Kyu-Tae and Pastore, Alessandro and others},
  journal={Nature},
  volume={569},
  number={7757},
  pages={576--580},
  year={2019},
  publisher={Nature Publishing Group UK London}
}



@article{xue2020rapid,
  title={Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition},
  author={Xue, Jenny Y and Zhao, Yulei and Aronowitz, Jordan and Mai, Trang T and Vides, Alberto and Qeriqi, Besnik and Kim, Dongsung and Li, Chuanchuan and de Stanchina, Elisa and Mazutis, Linas and others},
  journal={Nature},
  volume={577},
  number={7790},
  pages={421--425},
  year={2020},
  publisher={Nature Publishing Group UK London}
}



@article{de2020improving,
  title={Improving replicability in single-cell RNA-Seq cell type discovery with Dune},
  author={de B{\'e}zieux, Hector Roux and Street, Kelly and Fischer, Stephan and Van den Berge, Koen and Chance, Rebecca and Risso, Davide and Gillis, Jesse and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine},
  journal={BMC Bioinformatics},
  volume={25},
  pages={198},
  year={2024},
  publisher={Cold Spring Harbor Laboratory}
}



@article{hicks2021mbkmeans,
  title={mbkmeans: Fast clustering for single cell data using mini-batch k-means},
  author={Hicks, Stephanie C and Liu, Ruoxi and Ni, Yuwei and Purdom, Elizabeth and Risso, Davide},
  journal={PLoS Computational Biology},
  volume={17},
  number={1},
  pages={e1008625},
  year={2021},
  publisher={Public Library of Science San Francisco, CA USA}
}



@article{calgaro2020assessment,
  title={Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data},
  author={Calgaro, Matteo and Romualdi, Chiara and Waldron, Levi and Risso, Davide and Vitulo, Nicola},
  journal={Genome Biology},
  volume={21},
  number={1},
  pages={191},
  year={2020},
  publisher={BioMed Central London}
}



@article{risso2021per,
  title={Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles},
  author={Risso, Davide and Pagnotta, Stefano Maria},
  journal={Bioinformatics},
  volume={37},
  number={16},
  pages={2356--2364},
  year={2021},
  publisher={Oxford University Press}
}



@article{brann2020non,
  title={Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia},
  author={Brann, David H and Tsukahara, Tatsuya and Weinreb, Caleb and Lipovsek, Marcela and Van den Berge, Koen and Gong, Boying and Chance, Rebecca and Macaulay, Iain C and Chou, Hsin-Jung and Fletcher, Russell B and others},
  journal={Science Advances},
  volume={6},
  number={31},
  pages={eabc5801},
  year={2020},
  publisher={American Association for the Advancement of Science}
}



@article{finotello2020multi,
  title={Multi-omic data integration in oncology},
  author={Finotello, Francesca and Calura, Enrica and Risso, Davide and Hautaniemi, Sampsa and Romualdi, Chiara},
  journal={Frontiers in Oncology},
  volume={10},
  pages={1768},
  year={2020}
}



@article{nguyen2023structure,
  title={Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data},
  author={Nguyen, Thi Kim Hue and Van den Berge, Koen and Chiogna, Monica and Risso, Davide},
  journal={The Annals of Applied Statistics},
  volume={17},
  number={3},
  pages={2555--2573},
  year={2023},
  publisher={Institute of Mathematical Statistics}
}



@article{joglekar2021spatially,
  title={A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain},
  author={Joglekar, Anoushka and Prjibelski, Andrey and Mahfouz, Ahmed and Collier, Paul and Lin, Susan and Schlusche, Anna Katharina and Marrocco, Jordan and Williams, Stephen R and Haase, Bettina and Hayes, Ashley and others},
  journal={Nature Communications},
  volume={12},
  number={1},
  pages={463},
  year={2021},
  publisher={Nature Publishing Group UK London}
}



@article{van2022normalization,
  title={Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects},
  author={Van den Berge, Koen and Chou, Hsin-Jung and de B{\'e}zieux, Hector Roux and Street, Kelly and Risso, Davide and Ngai, John and Dudoit, Sandrine},
  journal={Cell Reports Methods},
  volume={2},
  number={11},
  year={2022},
  publisher={Elsevier}
}



@article{righelli2022spatialexperiment,
  title={SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor},
  author={Righelli, Dario and Weber, Lukas M and Crowell, Helena L and Pardo, Brenda and Collado-Torres, Leonardo and Ghazanfar, Shila and Lun, Aaron TL and Hicks, Stephanie C and Risso, Davide},
  journal={Bioinformatics},
  volume={38},
  number={11},
  pages={3128--3131},
  year={2022},
  publisher={Oxford University Press}
}



@incollection{risso2021normalization,
  title={Normalization of single-cell RNA-seq data},
  author={Risso, Davide},
  booktitle={RNA Bioinformatics},
  pages={303--329},
  year={2021},
  publisher={Springer US New York, NY}
}



@article{borella2022psinorm,
  title={PsiNorm: a scalable normalization for single-cell RNA-seq data},
  author={Borella, Matteo and Martello, Graziano and Risso, Davide and Romualdi, Chiara},
  journal={Bioinformatics},
  volume={38},
  number={1},
  pages={164--172},
  year={2022},
  publisher={Oxford University Press}
}




@article{agostinis2022newwave,
  title={NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data},
  author={Agostinis, Federico and Romualdi, Chiara and Sales, Gabriele and Risso, Davide},
  journal={Bioinformatics},
  volume={38},
  number={9},
  pages={2648--2650},
  year={2022},
  publisher={Oxford University Press}
}



@article{yao2021transcriptomic,
  title={A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex},
  author={Yao, Zizhen and Liu, Hanqing and Xie, Fangming and Fischer, Stephan and Adkins, Ricky S and Aldridge, Andrew I and Ament, Seth A and Bartlett, Anna and Behrens, M Margarita and Van den Berge, Koen and others},
  journal={Nature},
  volume={598},
  number={7879},
  pages={103--110},
  year={2021},
  publisher={Nature Publishing Group UK London}
}



@article{sottosanti2023co,
  title={Co-clustering of spatially resolved transcriptomic data},
  author={Sottosanti, Andrea and Risso, Davide},
  journal={The Annals of Applied Statistics},
  volume={17},
  number={2},
  pages={1444},
  year={2023}
}



@article{modzelewski2021mouse,
  title={A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development},
  author={Modzelewski, Andrew J and Shao, Wanqing and Chen, Jingqi and Lee, Angus and Qi, Xin and Noon, Mackenzie and Tjokro, Kristy and Sales, Gabriele and Biton, Anne and Anand, Aparna and others},
  journal={Cell},
  volume={184},
  number={22},
  pages={5541--5558},
  year={2021},
  publisher={Elsevier}
}



@article{eckenrode2023curated,
  title={Curated single cell multimodal landmark datasets for R/Bioconductor},
  author={Eckenrode, Kelly B and Righelli, Dario and Ramos, Marcel and Argelaguet, Ricard and Vanderaa, Christophe and Geistlinger, Ludwig and Culhane, Aedin C and Gatto, Laurent and Carey, Vincent and Morgan, Martin and others},
  journal={PLOS Computational Biology},
  volume={19},
  number={8},
  pages={e1011324},
  year={2023},
  publisher={Public Library of Science San Francisco, CA USA}
}



@article{brain2021multimodal,
  title={A multimodal cell census and atlas of the mammalian primary motor cortex},
  author={BRAIN Initiative Cell Census Network (BICCN)},
  journal={Nature},
  volume={598},
  number={7879},
  pages={86--102},
  year={2021},
  publisher={Nature Publishing Group UK London}
}



@article{to2022receiver,
  title={Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data},
  author={To, Duc-Khanh and Adimari, Gianfranco and Chiogna, Monica and Risso, Davide},
  journal={Statistical Methods in Medical Research},
  volume={31},
  number={7},
  pages={1325--1341},
  year={2022},
  publisher={SAGE Publications Sage UK: London, England}
}



@article{nguyen2025guided,
  title={Guided structure learning of DAGs for count data},
  author={Nguyen, Thi Kim Hue and Chiogna, Monica and Risso, Davide and Banzato, Erika},
  journal={Statistical Modelling},
  volume={25},
  number={4},
  pages={366--390},
  year={2025},
  publisher={Sage Publications Sage India: New Delhi, India}
}



@article{banzato2023bartlett,
  title={A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models},
  author={Banzato, Erika and Chiogna, Monica and Djordjilovi{\'c}, Vera and Risso, Davide},
  journal={Statistics \& Probability Letters},
  volume={193},
  pages={109732},
  year={2023},
  publisher={North-Holland}
}



@article{calgaro2023benchdamic,
  title={benchdamic: benchmarking of differential abundance methods for microbiome data},
  author={Calgaro, Matteo and Romualdi, Chiara and Risso, Davide and Vitulo, Nicola},
  journal={Bioinformatics},
  volume={39},
  number={1},
  pages={btac778},
  year={2023},
  publisher={Oxford University Press}
}




@article{righelli2023designing,
  title={Designing spatial transcriptomic experiments},
  author={Righelli, Dario and Sottosanti, Andrea and Risso, Davide},
  journal={Nature Methods},
  volume={20},
  number={3},
  pages={355--356},
  year={2023},
  publisher={Nature Publishing Group US New York}
}



@article{canale2023structured,
  title={Structured factorization for single-cell gene expression data},
  author={Canale, Antonio and Galtarossa, Luisa and Risso, Davide and Schiavon, Lorenzo and Toto, Giovanni},
  journal={Journal of the Royal Statistical Society Series C: Applied Statistics},
  year={2026},
  pages={qlag009}
}



@article{van2025latent,
  title={A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling},
  author={Van den Berge, Koen and Bakalar, Dana and Chou, Hsin-Jung and Kunda, Divya and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine and Ngai, John and Heavner, Whitney},
  journal={Stem Cell Reports},
  volume={21},
  pages={102778},
  year={2026}
}



@article{gilis2025differential,
  title={Differential detection workflows for multi-sample single-cell RNA-seq data},
  author={Gilis, Jeroen and Perin, Laura and Malfait, Milan and Crowell, Helena L and Van den Berge, Koen and Assefa, Alemu Takele and Verbist, Bie and Risso, Davide and Clement, Lieven},
  journal={BMC Genomics},
  volume={26},
  number={1},
  pages={1--20},
  year={2025},
  publisher={BioMed Central}
}



@article{ford2024global,
  title={A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex},
  author={Ford, Kaitlyn and Zuin, Elena and Righelli, Dario and Medina, Elizabeth and Schoch, Hannah and Singletary, Kristan and Muheim, Christine and Frank, Marcos G and Hicks, Stephanie C and Risso, Davide and others},
  journal={iScience},
  volume={27},
  number={9},
  year={2024},
  publisher={Elsevier}
}



@article{pirrotta2024exploring,
  title={Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package},
  author={Pirrotta, Stefania and Masatti, Laura and Bortolato, Anna and Corr{\`a}, Anna and Pedrini, Fabiola and Aere, Martina and Esposito, Giovanni and Martini, Paolo and Risso, Davide and Romualdi, Chiara and others},
  journal={NAR Genomics and Bioinformatics},
  volume={6},
  number={4},
  pages={lqae138},
  year={2024},
  publisher={Oxford University Press}
}



@article{corbetta2024conformal,
  title={Conformal inference for cell type annotation with graph-structured constraints},
  author={Corbetta, Daniela and Finos, Livio and Geistlinger, Ludwig and Risso, Davide},
  journal={arXiv preprint arXiv:2410.23786},
  year={2024}
}



@article{castiglione2024stochastic,
  title={Stochastic gradient descent estimation of generalized matrix factorization models with application to single-cell RNA sequencing data},
  author={Castiglione, Cristian and Segers, Alexandre and Clement, Lieven and Risso, Davide},
  journal={arXiv preprint arXiv:2412.20509},
  year={2024}
}



@article{segers2024saser,
  title={saseR: Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval},
  author={Segers, Alexandre and Gilis, Jeroen and Van Heetvelde, Mattias and Risso, Davide and De Baere, Elfride and Clement, Lieven},
  journal={Genome Biology},
  volume={27},
  pages={103},
  year={2026}
}



@article{sottosanti2025spatially,
  title={Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data},
  author={Sottosanti, Andrea and Denti, Francesco and Galimberti, Stefania and Risso, Davide and Capitoli, Giulia},
  journal={Biometrical Journal},
  volume={67},
  number={2},
  pages={e70031},
  year={2025}
}



@article{segers2025omicsgmf,
  title={omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk-and single cell proteomics data},
  author={Segers, Alexandre and Castiglione, Cristian and Vanderaa, Christophe and Martens, Lennart and Risso, Davide and Clement, Lieven},
  journal={bioRxiv},
  year={2025}
}



@article{bhinder2025pan,
  title={Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles},
  author={Bhinder, Bhavneet and Friedl, Verena and Sethuraman, Sunantha and Risso, Davide and Chiotti, Kami E and Mashl, R Jay and Ellrott, Kyle P and Lee, Jordan A and Wong, Christopher K and Gyan, Kofi and others},
  journal={Scientific Reports},
  volume={15},
  number={1},
  pages={23921},
  year={2025},
  publisher={Nature Publishing Group UK London}
}



@article{ramos2012bioconductor,
  title={Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer},
  author={Ramos, Marcel and Shepherd, Lori and Sheffield, Nathan C and Mahmoud, Alexandru and Pag{\`e}s, Herv{\'e} and Wokaty, Andres and Righelli, Dario and Risso, Davide and Davis, Sean and Oh, Sehyun and others},
  journal={Cancer Bioinformatics},
  pages={1--46},
  year={2025},
  publisher={Springer US New York, NY}
}




@article{sottosanti2025spatially,
  title={Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data},
  author={Sottosanti, Andrea and Risso, Davide and Denti, Francesco},
  journal={Journal of Classification},
  pages={1--23},
  year={2025},
  publisher={Springer US}
}



@article{billato2025benchmarking,
  title={Benchmarking large-scale single-cell RNA-seq analysis},
  author={Billato, Ilaria and Pages, Herve and Carey, Vince and Waldron, Levi and Sales, Gabriele and Romualdi, Chiara and Risso, Davide},
  journal={bioRxiv},
  pages={2025--10},
  year={2025},
  publisher={Cold Spring Harbor Laboratory}
}



@article{crowell2025orchestrating,
  title={Orchestrating Spatial Transcriptomics Analysis with Bioconductor},
  author={Crowell, Helena L and Dong, Yixing and Billato, Ilaria and Cai, Peiying and Emons, Martin and Gunz, Samuel and Guo, Boyi and Li, Mengbo and Mahmoud, Alexandru and Manukyan, Art{\"u}r and others},
  journal={bioRxiv},
  pages={2025--11},
  year={2025},
  publisher={Cold Spring Harbor Laboratory}
}



@article{banzi2025spacetrooper,
  title={SpaceTrooper: a quality control framework for imaging-based spatial omics data},
  author={Banzi, Benedetta and Righelli, Dario and Marchionni, Matteo and Romano, Oriana and Forcato, Mattia and Risso, Davide and Bicciato, Silvio},
  journal={bioRxiv},
  pages={2025--12},
  year={2025},
  publisher={Cold Spring Harbor Laboratory}
}
\">\n            <i class=\"fa fa-download fa-fw\"></i> Download BibTeX\n          </a>\n        </li>\n        <li>\n          <a href=\"//bibbase.org/rss?bib=https://bibbase.org/network/files/KkByu8uHcEr482MkC\">\n            <i class=\"fa fa-rss fa-fw\"></i> RSS Feed\n          </a>\n          </li>\n      </ul>\n      </li>\n\n      \n\n\n      \n    </ul>\n\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_embed\"\n         style=\"display: none;\">\n\n      Excellent! Next you can\n      <a href=\"/network/register?next=/network/newSiteFromTemplate%3Fbiburl=https://bibbase.org/network/files/KkByu8uHcEr482MkC\"\n      >create a new website with this list</a>, or\n      embed it in an existing web page by copying &amp; pasting\n      any of the following snippets.\n\n      <div style=\"text-align: left; margin-top: 1em;\">\n        <strong>JavaScript</strong>\n        <span class=\"comment recommended\">(easiest)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;script src=\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2FKkByu8uHcEr482MkC&amp;jsonp=1&amp;noBootstrap=1&amp;jsonp=1\"&gt;&lt;/script&gt;\n          </code>\n        </div>\n\n        <strong>PHP</strong>\n        <div class=\"well well-small\">\n          <code>\n            &lt;?php\n            $contents = file_get_contents(\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2FKkByu8uHcEr482MkC&amp;jsonp=1&amp;noBootstrap=1\");\n            print_r($contents);\n            ?&gt;\n          </code>\n        </div>\n\n        <strong>iFrame</strong>\n        <span class=\"comment\">(not recommended)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;iframe src=\"https://bibbase.org/show?bib=https%3A%2F%2Fbibbase.org%2Fnetwork%2Ffiles%2FKkByu8uHcEr482MkC&amp;jsonp=1&amp;noBootstrap=1\"&gt;&lt;/iframe&gt;\n          </code>\n        </div>\n\n        <p>\n          For more details see the <a href=\"//bibbase.org/help\">documention</a>.\n        </p>\n      </div>\n    </div>\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_preview\"\n         style=\"display: none;\">\n\n      This is a preview! To use this list on your own web site\n      or create a new web site from it,\n      <a href=\"/network/register?next=/network/newAccountWithFile%3FfileId=\"\n      >create a free account</a>. The file will be added\n      and you will be able to edit it in the File Manager.\n      We will show you instructions once you've created your account.\n    </div>\n\n    <div class=\"alert alert-warning bibbase_msg\" id=\"bibbase_msg_mendeley1\"\n         style=\"display: none;\">\n\n      <p>To the site owner:</p>\n\n      <p><strong>Action required!</strong> Mendeley is changing its\n        API. In order to keep using Mendeley with BibBase past April\n        14th, you need to:\n        <ol>\n          <li>renew the authorization for BibBase on Mendeley, and</li>\n          <li>update the BibBase URL\n            in your page the same way you did when you initially set up\n            this page.\n          </li>\n        </ol>\n      </p>\n\n      <p>\n        <a href=\"http://bibbase.org/cgi-bin/mendeley2/get.py\">\n          <i class=\"fa fa-angle-double-right\"></i>\n          Fix it now</a>\n      </p>\n    </div>\n\n  </div>\n\n\n  <div id=\"bibbase_body\">\n    \n  \n  <div class=\"bibbase_group_whole\" id=\"group_2026\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2026')\"\n      onkeypress=\"toggleGroup('group_2026')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2026</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"canale-galtarossa-risso-schiavon-toto-structuredfactorizationforsinglecellgeneexpressiondata-2026\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Structured factorization for single-cell gene expression data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Canale, A.; Galtarossa, L.; Risso, D.; Schiavon, L.;  and Toto, G.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of the Royal Statistical Society Series C: Applied Statistics</i>,qlag009.  2026.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/canale-galtarossa-risso-schiavon-toto-structuredfactorizationforsinglecellgeneexpressiondata-2026\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('canale-galtarossa-risso-schiavon-toto-structuredfactorizationforsinglecellgeneexpressiondata-2026')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{canale2023structured,\n  title={Structured factorization for single-cell gene expression data},\n  author={Canale, Antonio and Galtarossa, Luisa and Risso, Davide and Schiavon, Lorenzo and Toto, Giovanni},\n  journal={Journal of the Royal Statistical Society Series C: Applied Statistics},\n  year={2026},\n  pages={qlag009}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"vandenberge-bakalar-chou-kunda-risso-street-purdom-dudoit-etal-alatentactivatedolfactorystemcellstaterevealedbysinglecelltranscriptomicandepigenomicprofiling-2026\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Van den Berge, K.; Bakalar, D.; Chou, H.; Kunda, D.; Risso, D.; Street, K.; Purdom, E.; Dudoit, S.; Ngai, J.;  and Heavner, W.\n</span>\n\n  \n\n</span>\n\n  <i>Stem Cell Reports</i>, 21: 102778.  2026.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/vandenberge-bakalar-chou-kunda-risso-street-purdom-dudoit-etal-alatentactivatedolfactorystemcellstaterevealedbysinglecelltranscriptomicandepigenomicprofiling-2026\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('vandenberge-bakalar-chou-kunda-risso-street-purdom-dudoit-etal-alatentactivatedolfactorystemcellstaterevealedbysinglecelltranscriptomicandepigenomicprofiling-2026')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{van2025latent,\n  title={A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling},\n  author={Van den Berge, Koen and Bakalar, Dana and Chou, Hsin-Jung and Kunda, Divya and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine and Ngai, John and Heavner, Whitney},\n  journal={Stem Cell Reports},\n  volume={21},\n  pages={102778},\n  year={2026}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"segers-gilis-vanheetvelde-risso-debaere-clement-saserjugglingoffsetsunlocksrnaseqtoolsforfastandscalabledifferentialusageaberrantsplicingandexpressionretrieval-2026\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  saseR: Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Segers, A.; Gilis, J.; Van Heetvelde, M.; Risso, D.; De Baere, E.;  and Clement, L.\n</span>\n\n  \n\n</span>\n\n  <i>Genome Biology</i>, 27: 103.  2026.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/segers-gilis-vanheetvelde-risso-debaere-clement-saserjugglingoffsetsunlocksrnaseqtoolsforfastandscalabledifferentialusageaberrantsplicingandexpressionretrieval-2026\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('segers-gilis-vanheetvelde-risso-debaere-clement-saserjugglingoffsetsunlocksrnaseqtoolsforfastandscalabledifferentialusageaberrantsplicingandexpressionretrieval-2026')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{segers2024saser,\n  title={saseR: Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval},\n  author={Segers, Alexandre and Gilis, Jeroen and Van Heetvelde, Mattias and Risso, Davide and De Baere, Elfride and Clement, Lieven},\n  journal={Genome Biology},\n  volume={27},\n  pages={103},\n  year={2026}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2025\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2025')\"\n      onkeypress=\"toggleGroup('group_2025')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2025</span>\n      <span class=\"bibbase_group_count\">\n        \n        (10)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"nguyen-chiogna-risso-banzato-guidedstructurelearningofdagsforcountdata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Guided structure learning of DAGs for count data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Nguyen, T. K. H.; Chiogna, M.; Risso, D.;  and Banzato, E.\n</span>\n\n  \n\n</span>\n\n  <i>Statistical Modelling</i>, 25(4): 366–390.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/nguyen-chiogna-risso-banzato-guidedstructurelearningofdagsforcountdata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('nguyen-chiogna-risso-banzato-guidedstructurelearningofdagsforcountdata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{nguyen2025guided,\n  title={Guided structure learning of DAGs for count data},\n  author={Nguyen, Thi Kim Hue and Chiogna, Monica and Risso, Davide and Banzato, Erika},\n  journal={Statistical Modelling},\n  volume={25},\n  number={4},\n  pages={366--390},\n  year={2025},\n  publisher={Sage Publications Sage India: New Delhi, India}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"gilis-perin-malfait-crowell-vandenberge-assefa-verbist-risso-etal-differentialdetectionworkflowsformultisamplesinglecellrnaseqdata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Differential detection workflows for multi-sample single-cell RNA-seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Gilis, J.; Perin, L.; Malfait, M.; Crowell, H. L; Van den Berge, K.; Assefa, A. T.; Verbist, B.; Risso, D.;  and Clement, L.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Genomics</i>, 26(1): 1–20.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/gilis-perin-malfait-crowell-vandenberge-assefa-verbist-risso-etal-differentialdetectionworkflowsformultisamplesinglecellrnaseqdata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('gilis-perin-malfait-crowell-vandenberge-assefa-verbist-risso-etal-differentialdetectionworkflowsformultisamplesinglecellrnaseqdata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{gilis2025differential,\n  title={Differential detection workflows for multi-sample single-cell RNA-seq data},\n  author={Gilis, Jeroen and Perin, Laura and Malfait, Milan and Crowell, Helena L and Van den Berge, Koen and Assefa, Alemu Takele and Verbist, Bie and Risso, Davide and Clement, Lieven},\n  journal={BMC Genomics},\n  volume={26},\n  number={1},\n  pages={1--20},\n  year={2025},\n  publisher={BioMed Central}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"sottosanti-denti-galimberti-risso-capitoli-spatiallyinformednonnegativematrixtrifactorizationforcoclusteringmassspectrometrydata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Sottosanti, A.; Denti, F.; Galimberti, S.; Risso, D.;  and Capitoli, G.\n</span>\n\n  \n\n</span>\n\n  <i>Biometrical Journal</i>, 67(2): e70031.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/sottosanti-denti-galimberti-risso-capitoli-spatiallyinformednonnegativematrixtrifactorizationforcoclusteringmassspectrometrydata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('sottosanti-denti-galimberti-risso-capitoli-spatiallyinformednonnegativematrixtrifactorizationforcoclusteringmassspectrometrydata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{sottosanti2025spatially,\n  title={Spatially Informed Nonnegative Matrix Trifactorization for Coclustering Mass Spectrometry Data},\n  author={Sottosanti, Andrea and Denti, Francesco and Galimberti, Stefania and Risso, Davide and Capitoli, Giulia},\n  journal={Biometrical Journal},\n  volume={67},\n  number={2},\n  pages={e70031},\n  year={2025}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"segers-castiglione-vanderaa-martens-risso-clement-omicsgmfamultitoolfordimensionalityreductionbatchcorrectionandimputationappliedtobulkandsinglecellproteomicsdata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk-and single cell proteomics data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Segers, A.; Castiglione, C.; Vanderaa, C.; Martens, L.; Risso, D.;  and Clement, L.\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/segers-castiglione-vanderaa-martens-risso-clement-omicsgmfamultitoolfordimensionalityreductionbatchcorrectionandimputationappliedtobulkandsinglecellproteomicsdata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('segers-castiglione-vanderaa-martens-risso-clement-omicsgmfamultitoolfordimensionalityreductionbatchcorrectionandimputationappliedtobulkandsinglecellproteomicsdata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{segers2025omicsgmf,\n  title={omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk-and single cell proteomics data},\n  author={Segers, Alexandre and Castiglione, Cristian and Vanderaa, Christophe and Martens, Lennart and Risso, Davide and Clement, Lieven},\n  journal={bioRxiv},\n  year={2025}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"bhinder-friedl-sethuraman-risso-chiotti-mashl-ellrott-lee-etal-pancancerimmuneandstromaldeconvolutionpredictsclinicaloutcomesandmutationprofiles-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Bhinder, B.; Friedl, V.; Sethuraman, S.; Risso, D.; Chiotti, K. E; Mashl, R J.; Ellrott, K. P; Lee, J. A; Wong, C. K; Gyan, K.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Scientific Reports</i>, 15(1): 23921.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/bhinder-friedl-sethuraman-risso-chiotti-mashl-ellrott-lee-etal-pancancerimmuneandstromaldeconvolutionpredictsclinicaloutcomesandmutationprofiles-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('bhinder-friedl-sethuraman-risso-chiotti-mashl-ellrott-lee-etal-pancancerimmuneandstromaldeconvolutionpredictsclinicaloutcomesandmutationprofiles-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{bhinder2025pan,\n  title={Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles},\n  author={Bhinder, Bhavneet and Friedl, Verena and Sethuraman, Sunantha and Risso, Davide and Chiotti, Kami E and Mashl, R Jay and Ellrott, Kyle P and Lee, Jordan A and Wong, Christopher K and Gyan, Kofi and others},\n  journal={Scientific Reports},\n  volume={15},\n  number={1},\n  pages={23921},\n  year={2025},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"ramos-shepherd-sheffield-mahmoud-pags-wokaty-righelli-risso-etal-bioconductorscomputationalecosystemforgenomicdatascienceincancer-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Ramos, M.; Shepherd, L.; Sheffield, N. C; Mahmoud, A.; Pagès, H.; Wokaty, A.; Righelli, D.; Risso, D.; Davis, S.; Oh, S.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Cancer Bioinformatics</i>,1–46.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/ramos-shepherd-sheffield-mahmoud-pags-wokaty-righelli-risso-etal-bioconductorscomputationalecosystemforgenomicdatascienceincancer-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('ramos-shepherd-sheffield-mahmoud-pags-wokaty-righelli-risso-etal-bioconductorscomputationalecosystemforgenomicdatascienceincancer-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{ramos2012bioconductor,\n  title={Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer},\n  author={Ramos, Marcel and Shepherd, Lori and Sheffield, Nathan C and Mahmoud, Alexandru and Pag{\\&#x60;e}s, Herv{\\&#x27;e} and Wokaty, Andres and Righelli, Dario and Risso, Davide and Davis, Sean and Oh, Sehyun and others},\n  journal={Cancer Bioinformatics},\n  pages={1--46},\n  year={2025},\n  publisher={Springer US New York, NY}\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"sottosanti-risso-denti-spatiallyregularizedgaussianmixturesforclusteringspatialtranscriptomicdata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Sottosanti, A.; Risso, D.;  and Denti, F.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Classification</i>,1–23.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/sottosanti-risso-denti-spatiallyregularizedgaussianmixturesforclusteringspatialtranscriptomicdata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('sottosanti-risso-denti-spatiallyregularizedgaussianmixturesforclusteringspatialtranscriptomicdata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{sottosanti2025spatially,\n  title={Spatially Regularized Gaussian Mixtures for Clustering Spatial Transcriptomic Data},\n  author={Sottosanti, Andrea and Risso, Davide and Denti, Francesco},\n  journal={Journal of Classification},\n  pages={1--23},\n  year={2025},\n  publisher={Springer US}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"billato-pages-carey-waldron-sales-romualdi-risso-benchmarkinglargescalesinglecellrnaseqanalysis-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Benchmarking large-scale single-cell RNA-seq analysis.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Billato, I.; Pages, H.; Carey, V.; Waldron, L.; Sales, G.; Romualdi, C.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>,2025–10.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/billato-pages-carey-waldron-sales-romualdi-risso-benchmarkinglargescalesinglecellrnaseqanalysis-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('billato-pages-carey-waldron-sales-romualdi-risso-benchmarkinglargescalesinglecellrnaseqanalysis-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{billato2025benchmarking,\n  title={Benchmarking large-scale single-cell RNA-seq analysis},\n  author={Billato, Ilaria and Pages, Herve and Carey, Vince and Waldron, Levi and Sales, Gabriele and Romualdi, Chiara and Risso, Davide},\n  journal={bioRxiv},\n  pages={2025--10},\n  year={2025},\n  publisher={Cold Spring Harbor Laboratory}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"crowell-dong-billato-cai-emons-gunz-guo-li-etal-orchestratingspatialtranscriptomicsanalysiswithbioconductor-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Orchestrating Spatial Transcriptomics Analysis with Bioconductor.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Crowell, H. L; Dong, Y.; Billato, I.; Cai, P.; Emons, M.; Gunz, S.; Guo, B.; Li, M.; Mahmoud, A.; Manukyan, A.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>,2025–11.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/crowell-dong-billato-cai-emons-gunz-guo-li-etal-orchestratingspatialtranscriptomicsanalysiswithbioconductor-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('crowell-dong-billato-cai-emons-gunz-guo-li-etal-orchestratingspatialtranscriptomicsanalysiswithbioconductor-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{crowell2025orchestrating,\n  title={Orchestrating Spatial Transcriptomics Analysis with Bioconductor},\n  author={Crowell, Helena L and Dong, Yixing and Billato, Ilaria and Cai, Peiying and Emons, Martin and Gunz, Samuel and Guo, Boyi and Li, Mengbo and Mahmoud, Alexandru and Manukyan, Art{\\&quot;u}r and others},\n  journal={bioRxiv},\n  pages={2025--11},\n  year={2025},\n  publisher={Cold Spring Harbor Laboratory}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"banzi-righelli-marchionni-romano-forcato-risso-bicciato-spacetrooperaqualitycontrolframeworkforimagingbasedspatialomicsdata-2025\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  SpaceTrooper: a quality control framework for imaging-based spatial omics data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Banzi, B.; Righelli, D.; Marchionni, M.; Romano, O.; Forcato, M.; Risso, D.;  and Bicciato, S.\n</span>\n\n  \n\n</span>\n\n  <i>bioRxiv</i>,2025–12.  2025.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/banzi-righelli-marchionni-romano-forcato-risso-bicciato-spacetrooperaqualitycontrolframeworkforimagingbasedspatialomicsdata-2025\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('banzi-righelli-marchionni-romano-forcato-risso-bicciato-spacetrooperaqualitycontrolframeworkforimagingbasedspatialomicsdata-2025')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{banzi2025spacetrooper,\n  title={SpaceTrooper: a quality control framework for imaging-based spatial omics data},\n  author={Banzi, Benedetta and Righelli, Dario and Marchionni, Matteo and Romano, Oriana and Forcato, Mattia and Risso, Davide and Bicciato, Silvio},\n  journal={bioRxiv},\n  pages={2025--12},\n  year={2025},\n  publisher={Cold Spring Harbor Laboratory}\n}\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2024\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2024')\"\n      onkeypress=\"toggleGroup('group_2024')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2024</span>\n      <span class=\"bibbase_group_count\">\n        \n        (5)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"debzieux-street-fischer-vandenberge-chance-risso-gillis-ngai-etal-improvingreplicabilityinsinglecellrnaseqcelltypediscoverywithdune-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Improving replicability in single-cell RNA-Seq cell type discovery with Dune.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  de Bézieux, H. R.; Street, K.; Fischer, S.; Van den Berge, K.; Chance, R.; Risso, D.; Gillis, J.; Ngai, J.; Purdom, E.;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 25: 198.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/debzieux-street-fischer-vandenberge-chance-risso-gillis-ngai-etal-improvingreplicabilityinsinglecellrnaseqcelltypediscoverywithdune-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('debzieux-street-fischer-vandenberge-chance-risso-gillis-ngai-etal-improvingreplicabilityinsinglecellrnaseqcelltypediscoverywithdune-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{de2020improving,\n  title={Improving replicability in single-cell RNA-Seq cell type discovery with Dune},\n  author={de B{\\&#x27;e}zieux, Hector Roux and Street, Kelly and Fischer, Stephan and Van den Berge, Koen and Chance, Rebecca and Risso, Davide and Gillis, Jesse and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine},\n  journal={BMC Bioinformatics},\n  volume={25},\n  pages={198},\n  year={2024},\n  publisher={Cold Spring Harbor Laboratory}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"ford-zuin-righelli-medina-schoch-singletary-muheim-frank-etal-aglobaltranscriptionalatlasoftheeffectofacutesleepdeprivationinthemousefrontalcortex-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Ford, K.; Zuin, E.; Righelli, D.; Medina, E.; Schoch, H.; Singletary, K.; Muheim, C.; Frank, M. G; Hicks, S. C; Risso, D.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>iScience</i>, 27(9).  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/ford-zuin-righelli-medina-schoch-singletary-muheim-frank-etal-aglobaltranscriptionalatlasoftheeffectofacutesleepdeprivationinthemousefrontalcortex-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('ford-zuin-righelli-medina-schoch-singletary-muheim-frank-etal-aglobaltranscriptionalatlasoftheeffectofacutesleepdeprivationinthemousefrontalcortex-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{ford2024global,\n  title={A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex},\n  author={Ford, Kaitlyn and Zuin, Elena and Righelli, Dario and Medina, Elizabeth and Schoch, Hannah and Singletary, Kristan and Muheim, Christine and Frank, Marcos G and Hicks, Stephanie C and Risso, Davide and others},\n  journal={iScience},\n  volume={27},\n  number={9},\n  year={2024},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"pirrotta-masatti-bortolato-corr-pedrini-aere-esposito-martini-etal-exploringpubliccancergeneexpressionsignaturesacrossbulksinglecellandspatialtranscriptomicsdatawithsignifinderbioconductorpackage-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Pirrotta, S.; Masatti, L.; Bortolato, A.; Corrà, A.; Pedrini, F.; Aere, M.; Esposito, G.; Martini, P.; Risso, D.; Romualdi, C.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>NAR Genomics and Bioinformatics</i>, 6(4): lqae138.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/pirrotta-masatti-bortolato-corr-pedrini-aere-esposito-martini-etal-exploringpubliccancergeneexpressionsignaturesacrossbulksinglecellandspatialtranscriptomicsdatawithsignifinderbioconductorpackage-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('pirrotta-masatti-bortolato-corr-pedrini-aere-esposito-martini-etal-exploringpubliccancergeneexpressionsignaturesacrossbulksinglecellandspatialtranscriptomicsdatawithsignifinderbioconductorpackage-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{pirrotta2024exploring,\n  title={Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package},\n  author={Pirrotta, Stefania and Masatti, Laura and Bortolato, Anna and Corr{\\&#x60;a}, Anna and Pedrini, Fabiola and Aere, Martina and Esposito, Giovanni and Martini, Paolo and Risso, Davide and Romualdi, Chiara and others},\n  journal={NAR Genomics and Bioinformatics},\n  volume={6},\n  number={4},\n  pages={lqae138},\n  year={2024},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"corbetta-finos-geistlinger-risso-conformalinferenceforcelltypeannotationwithgraphstructuredconstraints-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Conformal inference for cell type annotation with graph-structured constraints.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Corbetta, D.; Finos, L.; Geistlinger, L.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>arXiv preprint arXiv:2410.23786</i>.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/corbetta-finos-geistlinger-risso-conformalinferenceforcelltypeannotationwithgraphstructuredconstraints-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('corbetta-finos-geistlinger-risso-conformalinferenceforcelltypeannotationwithgraphstructuredconstraints-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{corbetta2024conformal,\n  title={Conformal inference for cell type annotation with graph-structured constraints},\n  author={Corbetta, Daniela and Finos, Livio and Geistlinger, Ludwig and Risso, Davide},\n  journal={arXiv preprint arXiv:2410.23786},\n  year={2024}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"castiglione-segers-clement-risso-stochasticgradientdescentestimationofgeneralizedmatrixfactorizationmodelswithapplicationtosinglecellrnasequencingdata-2024\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Stochastic gradient descent estimation of generalized matrix factorization models with application to single-cell RNA sequencing data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Castiglione, C.; Segers, A.; Clement, L.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>arXiv preprint arXiv:2412.20509</i>.  2024.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/castiglione-segers-clement-risso-stochasticgradientdescentestimationofgeneralizedmatrixfactorizationmodelswithapplicationtosinglecellrnasequencingdata-2024\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('castiglione-segers-clement-risso-stochasticgradientdescentestimationofgeneralizedmatrixfactorizationmodelswithapplicationtosinglecellrnasequencingdata-2024')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{castiglione2024stochastic,\n  title={Stochastic gradient descent estimation of generalized matrix factorization models with application to single-cell RNA sequencing data},\n  author={Castiglione, Cristian and Segers, Alexandre and Clement, Lieven and Risso, Davide},\n  journal={arXiv preprint arXiv:2412.20509},\n  year={2024}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2023\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2023')\"\n      onkeypress=\"toggleGroup('group_2023')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2023</span>\n      <span class=\"bibbase_group_count\">\n        \n        (6)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"nguyen-vandenberge-chiogna-risso-structurelearningforzeroinflatedcountswithanapplicationtosinglecellrnasequencingdata-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Nguyen, T. K. H.; Van den Berge, K.; Chiogna, M.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>The Annals of Applied Statistics</i>, 17(3): 2555–2573.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/nguyen-vandenberge-chiogna-risso-structurelearningforzeroinflatedcountswithanapplicationtosinglecellrnasequencingdata-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('nguyen-vandenberge-chiogna-risso-structurelearningforzeroinflatedcountswithanapplicationtosinglecellrnasequencingdata-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{nguyen2023structure,\n  title={Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data},\n  author={Nguyen, Thi Kim Hue and Van den Berge, Koen and Chiogna, Monica and Risso, Davide},\n  journal={The Annals of Applied Statistics},\n  volume={17},\n  number={3},\n  pages={2555--2573},\n  year={2023},\n  publisher={Institute of Mathematical Statistics}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"sottosanti-risso-coclusteringofspatiallyresolvedtranscriptomicdata-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Co-clustering of spatially resolved transcriptomic data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Sottosanti, A.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>The Annals of Applied Statistics</i>, 17(2): 1444.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/sottosanti-risso-coclusteringofspatiallyresolvedtranscriptomicdata-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('sottosanti-risso-coclusteringofspatiallyresolvedtranscriptomicdata-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{sottosanti2023co,\n  title={Co-clustering of spatially resolved transcriptomic data},\n  author={Sottosanti, Andrea and Risso, Davide},\n  journal={The Annals of Applied Statistics},\n  volume={17},\n  number={2},\n  pages={1444},\n  year={2023}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"eckenrode-righelli-ramos-argelaguet-vanderaa-geistlinger-culhane-gatto-etal-curatedsinglecellmultimodallandmarkdatasetsforrbioconductor-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Curated single cell multimodal landmark datasets for R/Bioconductor.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Eckenrode, K. B; Righelli, D.; Ramos, M.; Argelaguet, R.; Vanderaa, C.; Geistlinger, L.; Culhane, A. C; Gatto, L.; Carey, V.; Morgan, M.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>PLOS Computational Biology</i>, 19(8): e1011324.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/eckenrode-righelli-ramos-argelaguet-vanderaa-geistlinger-culhane-gatto-etal-curatedsinglecellmultimodallandmarkdatasetsforrbioconductor-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('eckenrode-righelli-ramos-argelaguet-vanderaa-geistlinger-culhane-gatto-etal-curatedsinglecellmultimodallandmarkdatasetsforrbioconductor-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{eckenrode2023curated,\n  title={Curated single cell multimodal landmark datasets for R/Bioconductor},\n  author={Eckenrode, Kelly B and Righelli, Dario and Ramos, Marcel and Argelaguet, Ricard and Vanderaa, Christophe and Geistlinger, Ludwig and Culhane, Aedin C and Gatto, Laurent and Carey, Vincent and Morgan, Martin and others},\n  journal={PLOS Computational Biology},\n  volume={19},\n  number={8},\n  pages={e1011324},\n  year={2023},\n  publisher={Public Library of Science San Francisco, CA USA}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"banzato-chiogna-djordjilovi-risso-abartletttypecorrectionforlikelihoodratiotestswithapplicationtotestingequalityofgaussiangraphicalmodels-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Banzato, E.; Chiogna, M.; Djordjilović, V.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>Statistics & Probability Letters</i>, 193: 109732.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/banzato-chiogna-djordjilovi-risso-abartletttypecorrectionforlikelihoodratiotestswithapplicationtotestingequalityofgaussiangraphicalmodels-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('banzato-chiogna-djordjilovi-risso-abartletttypecorrectionforlikelihoodratiotestswithapplicationtotestingequalityofgaussiangraphicalmodels-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{banzato2023bartlett,\n  title={A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models},\n  author={Banzato, Erika and Chiogna, Monica and Djordjilovi{\\&#x27;c}, Vera and Risso, Davide},\n  journal={Statistics \\&amp; Probability Letters},\n  volume={193},\n  pages={109732},\n  year={2023},\n  publisher={North-Holland}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"calgaro-romualdi-risso-vitulo-benchdamicbenchmarkingofdifferentialabundancemethodsformicrobiomedata-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  benchdamic: benchmarking of differential abundance methods for microbiome data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Calgaro, M.; Romualdi, C.; Risso, D.;  and Vitulo, N.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 39(1): btac778.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/calgaro-romualdi-risso-vitulo-benchdamicbenchmarkingofdifferentialabundancemethodsformicrobiomedata-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('calgaro-romualdi-risso-vitulo-benchdamicbenchmarkingofdifferentialabundancemethodsformicrobiomedata-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{calgaro2023benchdamic,\n  title={benchdamic: benchmarking of differential abundance methods for microbiome data},\n  author={Calgaro, Matteo and Romualdi, Chiara and Risso, Davide and Vitulo, Nicola},\n  journal={Bioinformatics},\n  volume={39},\n  number={1},\n  pages={btac778},\n  year={2023},\n  publisher={Oxford University Press}\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"righelli-sottosanti-risso-designingspatialtranscriptomicexperiments-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Designing spatial transcriptomic experiments.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Righelli, D.; Sottosanti, A.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>Nature Methods</i>, 20(3): 355–356.  2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/righelli-sottosanti-risso-designingspatialtranscriptomicexperiments-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('righelli-sottosanti-risso-designingspatialtranscriptomicexperiments-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{righelli2023designing,\n  title={Designing spatial transcriptomic experiments},\n  author={Righelli, Dario and Sottosanti, Andrea and Risso, Davide},\n  journal={Nature Methods},\n  volume={20},\n  number={3},\n  pages={355--356},\n  year={2023},\n  publisher={Nature Publishing Group US New York}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2022\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2022')\"\n      onkeypress=\"toggleGroup('group_2022')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2022</span>\n      <span class=\"bibbase_group_count\">\n        \n        (5)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"vandenberge-chou-debzieux-street-risso-ngai-dudoit-normalizationbenchmarkofatacseqdatasetsshowstheimportanceofaccountingforgccontenteffects-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Van den Berge, K.; Chou, H.; de Bézieux, H. R.; Street, K.; Risso, D.; Ngai, J.;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>Cell Reports Methods</i>, 2(11).  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/vandenberge-chou-debzieux-street-risso-ngai-dudoit-normalizationbenchmarkofatacseqdatasetsshowstheimportanceofaccountingforgccontenteffects-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('vandenberge-chou-debzieux-street-risso-ngai-dudoit-normalizationbenchmarkofatacseqdatasetsshowstheimportanceofaccountingforgccontenteffects-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{van2022normalization,\n  title={Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects},\n  author={Van den Berge, Koen and Chou, Hsin-Jung and de B{\\&#x27;e}zieux, Hector Roux and Street, Kelly and Risso, Davide and Ngai, John and Dudoit, Sandrine},\n  journal={Cell Reports Methods},\n  volume={2},\n  number={11},\n  year={2022},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"righelli-weber-crowell-pardo-colladotorres-ghazanfar-lun-hicks-etal-spatialexperimentinfrastructureforspatiallyresolvedtranscriptomicsdatainrusingbioconductor-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Righelli, D.; Weber, L. M; Crowell, H. L; Pardo, B.; Collado-Torres, L.; Ghazanfar, S.; Lun, A. T.; Hicks, S. C;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 38(11): 3128–3131.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/righelli-weber-crowell-pardo-colladotorres-ghazanfar-lun-hicks-etal-spatialexperimentinfrastructureforspatiallyresolvedtranscriptomicsdatainrusingbioconductor-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('righelli-weber-crowell-pardo-colladotorres-ghazanfar-lun-hicks-etal-spatialexperimentinfrastructureforspatiallyresolvedtranscriptomicsdatainrusingbioconductor-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{righelli2022spatialexperiment,\n  title={SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor},\n  author={Righelli, Dario and Weber, Lukas M and Crowell, Helena L and Pardo, Brenda and Collado-Torres, Leonardo and Ghazanfar, Shila and Lun, Aaron TL and Hicks, Stephanie C and Risso, Davide},\n  journal={Bioinformatics},\n  volume={38},\n  number={11},\n  pages={3128--3131},\n  year={2022},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"borella-martello-risso-romualdi-psinormascalablenormalizationforsinglecellrnaseqdata-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  PsiNorm: a scalable normalization for single-cell RNA-seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Borella, M.; Martello, G.; Risso, D.;  and Romualdi, C.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 38(1): 164–172.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/borella-martello-risso-romualdi-psinormascalablenormalizationforsinglecellrnaseqdata-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('borella-martello-risso-romualdi-psinormascalablenormalizationforsinglecellrnaseqdata-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{borella2022psinorm,\n  title={PsiNorm: a scalable normalization for single-cell RNA-seq data},\n  author={Borella, Matteo and Martello, Graziano and Risso, Davide and Romualdi, Chiara},\n  journal={Bioinformatics},\n  volume={38},\n  number={1},\n  pages={164--172},\n  year={2022},\n  publisher={Oxford University Press}\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"agostinis-romualdi-sales-risso-newwaveascalablerbioconductorpackageforthedimensionalityreductionandbatcheffectremovalofsinglecellrnaseqdata-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Agostinis, F.; Romualdi, C.; Sales, G.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 38(9): 2648–2650.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/agostinis-romualdi-sales-risso-newwaveascalablerbioconductorpackageforthedimensionalityreductionandbatcheffectremovalofsinglecellrnaseqdata-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('agostinis-romualdi-sales-risso-newwaveascalablerbioconductorpackageforthedimensionalityreductionandbatcheffectremovalofsinglecellrnaseqdata-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{agostinis2022newwave,\n  title={NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data},\n  author={Agostinis, Federico and Romualdi, Chiara and Sales, Gabriele and Risso, Davide},\n  journal={Bioinformatics},\n  volume={38},\n  number={9},\n  pages={2648--2650},\n  year={2022},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"to-adimari-chiogna-risso-receiveroperatingcharacteristicestimationandthresholdselectioncriteriainthreeclassclassificationproblemsforclustereddata-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  To, D.; Adimari, G.; Chiogna, M.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>Statistical Methods in Medical Research</i>, 31(7): 1325–1341.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/to-adimari-chiogna-risso-receiveroperatingcharacteristicestimationandthresholdselectioncriteriainthreeclassclassificationproblemsforclustereddata-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('to-adimari-chiogna-risso-receiveroperatingcharacteristicestimationandthresholdselectioncriteriainthreeclassclassificationproblemsforclustereddata-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{to2022receiver,\n  title={Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data},\n  author={To, Duc-Khanh and Adimari, Gianfranco and Chiogna, Monica and Risso, Davide},\n  journal={Statistical Methods in Medical Research},\n  volume={31},\n  number={7},\n  pages={1325--1341},\n  year={2022},\n  publisher={SAGE Publications Sage UK: London, England}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2021\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2021')\"\n      onkeypress=\"toggleGroup('group_2021')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2021</span>\n      <span class=\"bibbase_group_count\">\n        \n        (7)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"hicks-liu-ni-purdom-risso-mbkmeansfastclusteringforsinglecelldatausingminibatchkmeans-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  mbkmeans: Fast clustering for single cell data using mini-batch k-means.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hicks, S. C; Liu, R.; Ni, Y.; Purdom, E.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>PLoS Computational Biology</i>, 17(1): e1008625.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hicks-liu-ni-purdom-risso-mbkmeansfastclusteringforsinglecelldatausingminibatchkmeans-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hicks-liu-ni-purdom-risso-mbkmeansfastclusteringforsinglecelldatausingminibatchkmeans-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{hicks2021mbkmeans,\n  title={mbkmeans: Fast clustering for single cell data using mini-batch k-means},\n  author={Hicks, Stephanie C and Liu, Ruoxi and Ni, Yuwei and Purdom, Elizabeth and Risso, Davide},\n  journal={PLoS Computational Biology},\n  volume={17},\n  number={1},\n  pages={e1008625},\n  year={2021},\n  publisher={Public Library of Science San Francisco, CA USA}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-pagnotta-persamplestandardizationandasymmetricwinsorizationleadtoaccurateclusteringofrnaseqexpressionprofiles-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.;  and Pagnotta, S. M.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 37(16): 2356–2364.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-pagnotta-persamplestandardizationandasymmetricwinsorizationleadtoaccurateclusteringofrnaseqexpressionprofiles-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-pagnotta-persamplestandardizationandasymmetricwinsorizationleadtoaccurateclusteringofrnaseqexpressionprofiles-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2021per,\n  title={Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles},\n  author={Risso, Davide and Pagnotta, Stefano Maria},\n  journal={Bioinformatics},\n  volume={37},\n  number={16},\n  pages={2356--2364},\n  year={2021},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"joglekar-prjibelski-mahfouz-collier-lin-schlusche-marrocco-williams-etal-aspatiallyresolvedbrainregionandcelltypespecificisoformatlasofthepostnatalmousebrain-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Joglekar, A.; Prjibelski, A.; Mahfouz, A.; Collier, P.; Lin, S.; Schlusche, A. K.; Marrocco, J.; Williams, S. R; Haase, B.; Hayes, A.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Nature Communications</i>, 12(1): 463.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/joglekar-prjibelski-mahfouz-collier-lin-schlusche-marrocco-williams-etal-aspatiallyresolvedbrainregionandcelltypespecificisoformatlasofthepostnatalmousebrain-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('joglekar-prjibelski-mahfouz-collier-lin-schlusche-marrocco-williams-etal-aspatiallyresolvedbrainregionandcelltypespecificisoformatlasofthepostnatalmousebrain-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{joglekar2021spatially,\n  title={A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain},\n  author={Joglekar, Anoushka and Prjibelski, Andrey and Mahfouz, Ahmed and Collier, Paul and Lin, Susan and Schlusche, Anna Katharina and Marrocco, Jordan and Williams, Stephen R and Haase, Bettina and Hayes, Ashley and others},\n  journal={Nature Communications},\n  volume={12},\n  number={1},\n  pages={463},\n  year={2021},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-normalizationofsinglecellrnaseqdata-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Normalization of single-cell RNA-seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.\n</span>\n\n  \n\n</span>\n\n  In <i>RNA Bioinformatics</i>, pages 303–329. Springer US New York, NY,  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-normalizationofsinglecellrnaseqdata-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-normalizationofsinglecellrnaseqdata-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@incollection{risso2021normalization,\n  title={Normalization of single-cell RNA-seq data},\n  author={Risso, Davide},\n  booktitle={RNA Bioinformatics},\n  pages={303--329},\n  year={2021},\n  publisher={Springer US New York, NY}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"yao-liu-xie-fischer-adkins-aldridge-ament-bartlett-etal-atranscriptomicandepigenomiccellatlasofthemouseprimarymotorcortex-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Yao, Z.; Liu, H.; Xie, F.; Fischer, S.; Adkins, R. S; Aldridge, A. I; Ament, S. A; Bartlett, A.; Behrens, M M.; Van den Berge, K.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Nature</i>, 598(7879): 103–110.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/yao-liu-xie-fischer-adkins-aldridge-ament-bartlett-etal-atranscriptomicandepigenomiccellatlasofthemouseprimarymotorcortex-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('yao-liu-xie-fischer-adkins-aldridge-ament-bartlett-etal-atranscriptomicandepigenomiccellatlasofthemouseprimarymotorcortex-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{yao2021transcriptomic,\n  title={A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex},\n  author={Yao, Zizhen and Liu, Hanqing and Xie, Fangming and Fischer, Stephan and Adkins, Ricky S and Aldridge, Andrew I and Ament, Seth A and Bartlett, Anna and Behrens, M Margarita and Van den Berge, Koen and others},\n  journal={Nature},\n  volume={598},\n  number={7879},\n  pages={103--110},\n  year={2021},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"modzelewski-shao-chen-lee-qi-noon-tjokro-sales-etal-amousespecificretrotransposondrivesaconservedcdk2ap1isoformessentialfordevelopment-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Modzelewski, A. J; Shao, W.; Chen, J.; Lee, A.; Qi, X.; Noon, M.; Tjokro, K.; Sales, G.; Biton, A.; Anand, A.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Cell</i>, 184(22): 5541–5558.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/modzelewski-shao-chen-lee-qi-noon-tjokro-sales-etal-amousespecificretrotransposondrivesaconservedcdk2ap1isoformessentialfordevelopment-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('modzelewski-shao-chen-lee-qi-noon-tjokro-sales-etal-amousespecificretrotransposondrivesaconservedcdk2ap1isoformessentialfordevelopment-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{modzelewski2021mouse,\n  title={A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development},\n  author={Modzelewski, Andrew J and Shao, Wanqing and Chen, Jingqi and Lee, Angus and Qi, Xin and Noon, Mackenzie and Tjokro, Kristy and Sales, Gabriele and Biton, Anne and Anand, Aparna and others},\n  journal={Cell},\n  volume={184},\n  number={22},\n  pages={5541--5558},\n  year={2021},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"biccn-amultimodalcellcensusandatlasofthemammalianprimarymotorcortex-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A multimodal cell census and atlas of the mammalian primary motor cortex.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  (BICCN), B. I. C. C. N.\n</span>\n\n  \n\n</span>\n\n  <i>Nature</i>, 598(7879): 86–102.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/biccn-amultimodalcellcensusandatlasofthemammalianprimarymotorcortex-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('biccn-amultimodalcellcensusandatlasofthemammalianprimarymotorcortex-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{brain2021multimodal,\n  title={A multimodal cell census and atlas of the mammalian primary motor cortex},\n  author={BRAIN Initiative Cell Census Network (BICCN)},\n  journal={Nature},\n  volume={598},\n  number={7879},\n  pages={86--102},\n  year={2021},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2020\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2020')\"\n      onkeypress=\"toggleGroup('group_2020')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2020</span>\n      <span class=\"bibbase_group_count\">\n        \n        (5)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"amezquita-lun-becht-carey-carpp-geistlinger-marini-ruealbrecht-etal-orchestratingsinglecellanalysiswithbioconductor-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Orchestrating single-cell analysis with Bioconductor.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Amezquita, R. A; Lun, A. T.; Becht, E.; Carey, V. J; Carpp, L. N; Geistlinger, L.; Marini, F.; Rue-Albrecht, K.; Risso, D.; Soneson, C.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Nature Methods</i>, 17(2): 137–145.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/amezquita-lun-becht-carey-carpp-geistlinger-marini-ruealbrecht-etal-orchestratingsinglecellanalysiswithbioconductor-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('amezquita-lun-becht-carey-carpp-geistlinger-marini-ruealbrecht-etal-orchestratingsinglecellanalysiswithbioconductor-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{amezquita2020orchestrating,\n  title={Orchestrating single-cell analysis with Bioconductor},\n  author={Amezquita, Robert A and Lun, Aaron TL and Becht, Etienne and Carey, Vince J and Carpp, Lindsay N and Geistlinger, Ludwig and Marini, Federico and Rue-Albrecht, Kevin and Risso, Davide and Soneson, Charlotte and others},\n  journal={Nature Methods},\n  volume={17},\n  number={2},\n  pages={137--145},\n  year={2020},\n  publisher={Nature Publishing Group US New York}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"xue-zhao-aronowitz-mai-vides-qeriqi-kim-li-etal-rapidnonuniformadaptationtoconformationspecifickrasg12cinhibition-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Xue, J. Y; Zhao, Y.; Aronowitz, J.; Mai, T. T; Vides, A.; Qeriqi, B.; Kim, D.; Li, C.; de Stanchina, E.; Mazutis, L.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Nature</i>, 577(7790): 421–425.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/xue-zhao-aronowitz-mai-vides-qeriqi-kim-li-etal-rapidnonuniformadaptationtoconformationspecifickrasg12cinhibition-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('xue-zhao-aronowitz-mai-vides-qeriqi-kim-li-etal-rapidnonuniformadaptationtoconformationspecifickrasg12cinhibition-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{xue2020rapid,\n  title={Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition},\n  author={Xue, Jenny Y and Zhao, Yulei and Aronowitz, Jordan and Mai, Trang T and Vides, Alberto and Qeriqi, Besnik and Kim, Dongsung and Li, Chuanchuan and de Stanchina, Elisa and Mazutis, Linas and others},\n  journal={Nature},\n  volume={577},\n  number={7790},\n  pages={421--425},\n  year={2020},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"calgaro-romualdi-waldron-risso-vitulo-assessmentofstatisticalmethodsfromsinglecellbulkrnaseqandmetagenomicsappliedtomicrobiomedata-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Calgaro, M.; Romualdi, C.; Waldron, L.; Risso, D.;  and Vitulo, N.\n</span>\n\n  \n\n</span>\n\n  <i>Genome Biology</i>, 21(1): 191.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/calgaro-romualdi-waldron-risso-vitulo-assessmentofstatisticalmethodsfromsinglecellbulkrnaseqandmetagenomicsappliedtomicrobiomedata-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('calgaro-romualdi-waldron-risso-vitulo-assessmentofstatisticalmethodsfromsinglecellbulkrnaseqandmetagenomicsappliedtomicrobiomedata-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{calgaro2020assessment,\n  title={Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data},\n  author={Calgaro, Matteo and Romualdi, Chiara and Waldron, Levi and Risso, Davide and Vitulo, Nicola},\n  journal={Genome Biology},\n  volume={21},\n  number={1},\n  pages={191},\n  year={2020},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"brann-tsukahara-weinreb-lipovsek-vandenberge-gong-chance-macaulay-etal-nonneuronalexpressionofsarscov2entrygenesintheolfactorysystemsuggestsmechanismsunderlyingcovid19associatedanosmia-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Brann, D. H; Tsukahara, T.; Weinreb, C.; Lipovsek, M.; Van den Berge, K.; Gong, B.; Chance, R.; Macaulay, I. C; Chou, H.; Fletcher, R. B;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Science Advances</i>, 6(31): eabc5801.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/brann-tsukahara-weinreb-lipovsek-vandenberge-gong-chance-macaulay-etal-nonneuronalexpressionofsarscov2entrygenesintheolfactorysystemsuggestsmechanismsunderlyingcovid19associatedanosmia-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('brann-tsukahara-weinreb-lipovsek-vandenberge-gong-chance-macaulay-etal-nonneuronalexpressionofsarscov2entrygenesintheolfactorysystemsuggestsmechanismsunderlyingcovid19associatedanosmia-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{brann2020non,\n  title={Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia},\n  author={Brann, David H and Tsukahara, Tatsuya and Weinreb, Caleb and Lipovsek, Marcela and Van den Berge, Koen and Gong, Boying and Chance, Rebecca and Macaulay, Iain C and Chou, Hsin-Jung and Fletcher, Russell B and others},\n  journal={Science Advances},\n  volume={6},\n  number={31},\n  pages={eabc5801},\n  year={2020},\n  publisher={American Association for the Advancement of Science}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"finotello-calura-risso-hautaniemi-romualdi-multiomicdataintegrationinoncology-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Multi-omic data integration in oncology.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Finotello, F.; Calura, E.; Risso, D.; Hautaniemi, S.;  and Romualdi, C.\n</span>\n\n  \n\n</span>\n\n  <i>Frontiers in Oncology</i>, 10: 1768.  2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/finotello-calura-risso-hautaniemi-romualdi-multiomicdataintegrationinoncology-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('finotello-calura-risso-hautaniemi-romualdi-multiomicdataintegrationinoncology-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{finotello2020multi,\n  title={Multi-omic data integration in oncology},\n  author={Finotello, Francesca and Calura, Enrica and Risso, Davide and Hautaniemi, Sampsa and Romualdi, Chiara},\n  journal={Frontiers in Oncology},\n  volume={10},\n  pages={1768},\n  year={2020}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2019\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2019')\"\n      onkeypress=\"toggleGroup('group_2019')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2019</span>\n      <span class=\"bibbase_group_count\">\n        \n        (4)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"cole-risso-wagner-detomaso-ngai-purdom-dudoit-yosef-performanceassessmentandselectionofnormalizationproceduresforsinglecellrnaseq-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Performance assessment and selection of normalization procedures for single-cell RNA-seq.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Cole, M. B; Risso, D.; Wagner, A.; DeTomaso, D.; Ngai, J.; Purdom, E.; Dudoit, S.;  and Yosef, N.\n</span>\n\n  \n\n</span>\n\n  <i>Cell Systems</i>, 8(4): 315–328.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/cole-risso-wagner-detomaso-ngai-purdom-dudoit-yosef-performanceassessmentandselectionofnormalizationproceduresforsinglecellrnaseq-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('cole-risso-wagner-detomaso-ngai-purdom-dudoit-yosef-performanceassessmentandselectionofnormalizationproceduresforsinglecellrnaseq-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{cole2019performance,\n  title={Performance assessment and selection of normalization procedures for single-cell RNA-seq},\n  author={Cole, Michael B and Risso, Davide and Wagner, Allon and DeTomaso, David and Ngai, John and Purdom, Elizabeth and Dudoit, Sandrine and Yosef, Nir},\n  journal={Cell Systems},\n  volume={8},\n  number={4},\n  pages={315--328},\n  year={2019},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"ingiosi-schoch-wintler-singletary-righelli-roser-medina-risso-etal-shank3modulatessleepandexpressionofcircadiantranscriptionfactors-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Shank3 modulates sleep and expression of circadian transcription factors.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Ingiosi, A. M; Schoch, H.; Wintler, T.; Singletary, K. G; Righelli, D.; Roser, L. G; Medina, E.; Risso, D.; Frank, M. G;  and Peixoto, L.\n</span>\n\n  \n\n</span>\n\n  <i>Elife</i>, 8: e42819.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/ingiosi-schoch-wintler-singletary-righelli-roser-medina-risso-etal-shank3modulatessleepandexpressionofcircadiantranscriptionfactors-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('ingiosi-schoch-wintler-singletary-righelli-roser-medina-risso-etal-shank3modulatessleepandexpressionofcircadiantranscriptionfactors-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{ingiosi2019shank3,\n  title={Shank3 modulates sleep and expression of circadian transcription factors},\n  author={Ingiosi, Ashley M and Schoch, Hannah and Wintler, Taylor and Singletary, Kristan G and Righelli, Dario and Roser, Leandro G and Medina, Elizabeth and Risso, Davide and Frank, Marcos G and Peixoto, Lucia},\n  journal={Elife},\n  volume={8},\n  pages={e42819},\n  year={2019},\n  publisher={eLife Sciences Publications, Ltd}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"naka-veit-shababo-chance-risso-stafford-snyder-egladyous-etal-complementarynetworksofcorticalsomatostatininterneuronsenforcelayerspecificcontrol-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Complementary networks of cortical somatostatin interneurons enforce layer specific control.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Naka, A.; Veit, J.; Shababo, B.; Chance, R. K; Risso, D.; Stafford, D.; Snyder, B.; Egladyous, A.; Chu, D.; Sridharan, S.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Elife</i>, 8: e43696.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/naka-veit-shababo-chance-risso-stafford-snyder-egladyous-etal-complementarynetworksofcorticalsomatostatininterneuronsenforcelayerspecificcontrol-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('naka-veit-shababo-chance-risso-stafford-snyder-egladyous-etal-complementarynetworksofcorticalsomatostatininterneuronsenforcelayerspecificcontrol-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{naka2019complementary,\n  title={Complementary networks of cortical somatostatin interneurons enforce layer specific control},\n  author={Naka, Alexander and Veit, Julia and Shababo, Ben and Chance, Rebecca K and Risso, Davide and Stafford, David and Snyder, Benjamin and Egladyous, Andrew and Chu, Desiree and Sridharan, Savitha and others},\n  journal={Elife},\n  volume={8},\n  pages={e43696},\n  year={2019},\n  publisher={eLife Sciences Publications, Ltd}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"gaiti-chaligne-gu-brand-kothenhill-schulman-grigorev-risso-etal-epigeneticevolutionandlineagehistoriesofchroniclymphocyticleukaemia-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Gaiti, F.; Chaligne, R.; Gu, H.; Brand, R. M; Kothen-Hill, S.; Schulman, R. C; Grigorev, K.; Risso, D.; Kim, K.; Pastore, A.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Nature</i>, 569(7757): 576–580.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/gaiti-chaligne-gu-brand-kothenhill-schulman-grigorev-risso-etal-epigeneticevolutionandlineagehistoriesofchroniclymphocyticleukaemia-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('gaiti-chaligne-gu-brand-kothenhill-schulman-grigorev-risso-etal-epigeneticevolutionandlineagehistoriesofchroniclymphocyticleukaemia-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{gaiti2019epigenetic,\n  title={Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia},\n  author={Gaiti, Federico and Chaligne, Ronan and Gu, Hongcang and Brand, Ryan M and Kothen-Hill, Steven and Schulman, Rafael C and Grigorev, Kirill and Risso, Davide and Kim, Kyu-Tae and Pastore, Alessandro and others},\n  journal={Nature},\n  volume={569},\n  number={7757},\n  pages={576--580},\n  year={2019},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2018\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2018')\"\n      onkeypress=\"toggleGroup('group_2018')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2018</span>\n      <span class=\"bibbase_group_count\">\n        \n        (7)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"street-risso-fletcher-das-ngai-yosef-purdom-dudoit-slingshotcelllineageandpseudotimeinferenceforsinglecelltranscriptomics-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Street, K.; Risso, D.; Fletcher, R. B; Das, D.; Ngai, J.; Yosef, N.; Purdom, E.;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Genomics</i>, 19(1): 477.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/street-risso-fletcher-das-ngai-yosef-purdom-dudoit-slingshotcelllineageandpseudotimeinferenceforsinglecelltranscriptomics-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('street-risso-fletcher-das-ngai-yosef-purdom-dudoit-slingshotcelllineageandpseudotimeinferenceforsinglecelltranscriptomics-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{street2018slingshot,\n  title={Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics},\n  author={Street, Kelly and Risso, Davide and Fletcher, Russell B and Das, Diya and Ngai, John and Yosef, Nir and Purdom, Elizabeth and Dudoit, Sandrine},\n  journal={BMC Genomics},\n  volume={19},\n  number={1},\n  pages={477},\n  year={2018},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"koberstein-poplawski-wimmer-porcari-kao-gomes-risso-hakonarson-etal-learningdependentchromatinremodelinghighlightsnoncodingregulatoryregionslinkedtoautism-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Koberstein, J. N; Poplawski, S. G; Wimmer, M. E; Porcari, G.; Kao, C.; Gomes, B.; Risso, D.; Hakonarson, H.; Zhang, N. R; Schultz, R. T;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Science Signaling</i>, 11(513): eaan6500.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/koberstein-poplawski-wimmer-porcari-kao-gomes-risso-hakonarson-etal-learningdependentchromatinremodelinghighlightsnoncodingregulatoryregionslinkedtoautism-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('koberstein-poplawski-wimmer-porcari-kao-gomes-risso-hakonarson-etal-learningdependentchromatinremodelinghighlightsnoncodingregulatoryregionslinkedtoautism-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{koberstein2018learning,\n  title={Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism},\n  author={Koberstein, John N and Poplawski, Shane G and Wimmer, Mathieu E and Porcari, Giulia and Kao, Charlly and Gomes, Bruce and Risso, Davide and Hakonarson, Hakon and Zhang, Nancy R and Schultz, Robert T and others},\n  journal={Science Signaling},\n  volume={11},\n  number={513},\n  pages={eaan6500},\n  year={2018},\n  publisher={American Association for the Advancement of Science}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-perraudeau-gribkova-dudoit-vert-ageneralandflexiblemethodforsignalextractionfromsinglecellrnaseqdata-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A general and flexible method for signal extraction from single-cell RNA-seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Perraudeau, F.; Gribkova, S.; Dudoit, S.;  and Vert, J.\n</span>\n\n  \n\n</span>\n\n  <i>Nature Communications</i>, 9(1): 284.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-perraudeau-gribkova-dudoit-vert-ageneralandflexiblemethodforsignalextractionfromsinglecellrnaseqdata-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-perraudeau-gribkova-dudoit-vert-ageneralandflexiblemethodforsignalextractionfromsinglecellrnaseqdata-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2018general,\n  title={A general and flexible method for signal extraction from single-cell RNA-seq data},\n  author={Risso, Davide and Perraudeau, Fanny and Gribkova, Svetlana and Dudoit, Sandrine and Vert, Jean-Philippe},\n  journal={Nature Communications},\n  volume={9},\n  number={1},\n  pages={284},\n  year={2018},\n  publisher={Nature Publishing Group UK London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-purvis-fletcher-das-ngai-dudoit-purdom-clusterexperimentandrsecabioconductorpackageandframeworkforclusteringofsinglecellandotherlargegeneexpressiondatasets-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Purvis, L.; Fletcher, R. B; Das, D.; Ngai, J.; Dudoit, S.;  and Purdom, E.\n</span>\n\n  \n\n</span>\n\n  <i>PLoS Computational Biology</i>, 14(9): e1006378.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-purvis-fletcher-das-ngai-dudoit-purdom-clusterexperimentandrsecabioconductorpackageandframeworkforclusteringofsinglecellandotherlargegeneexpressiondatasets-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-purvis-fletcher-das-ngai-dudoit-purdom-clusterexperimentandrsecabioconductorpackageandframeworkforclusteringofsinglecellandotherlargegeneexpressiondatasets-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2018clusterexperiment,\n  title={clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets},\n  author={Risso, Davide and Purvis, Liam and Fletcher, Russell B and Das, Diya and Ngai, John and Dudoit, Sandrine and Purdom, Elizabeth},\n  journal={PLoS Computational Biology},\n  volume={14},\n  number={9},\n  pages={e1006378},\n  year={2018},\n  publisher={Public Library of Science}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"kramer-risso-kosillo-ngai-bateup-combinatorialexpressionofgrpandneurod6definesdopamineneuronpopulationswithdistinctprojectionpatternsanddiseasevulnerability-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Combinatorial expression of Grp and Neurod6 defines dopamine neuron populations with distinct projection patterns and disease vulnerability.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Kramer, D. J; Risso, D.; Kosillo, P.; Ngai, J.;  and Bateup, H. S\n</span>\n\n  \n\n</span>\n\n  <i>eNeuro</i>, 5(3).  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/kramer-risso-kosillo-ngai-bateup-combinatorialexpressionofgrpandneurod6definesdopamineneuronpopulationswithdistinctprojectionpatternsanddiseasevulnerability-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('kramer-risso-kosillo-ngai-bateup-combinatorialexpressionofgrpandneurod6definesdopamineneuronpopulationswithdistinctprojectionpatternsanddiseasevulnerability-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{kramer2018combinatorial,\n  title={Combinatorial expression of Grp and Neurod6 defines dopamine neuron populations with distinct projection patterns and disease vulnerability},\n  author={Kramer, Daniel J and Risso, Davide and Kosillo, Polina and Ngai, John and Bateup, Helen S},\n  journal={eNeuro},\n  volume={5},\n  number={3},\n  year={2018},\n  publisher={Society for Neuroscience}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"vandenberge-perraudeau-soneson-love-risso-vert-robinson-dudoit-etal-observationweightsunlockbulkrnaseqtoolsforzeroinflationandsinglecellapplications-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Van den Berge, K.; Perraudeau, F.; Soneson, C.; Love, M. I.; Risso, D.; Vert, J.; Robinson, M. D.; Dudoit, S.;  and Clement, L.\n</span>\n\n  \n\n</span>\n\n  <i>Genome Biology</i>, 19.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/vandenberge-perraudeau-soneson-love-risso-vert-robinson-dudoit-etal-observationweightsunlockbulkrnaseqtoolsforzeroinflationandsinglecellapplications-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('vandenberge-perraudeau-soneson-love-risso-vert-robinson-dudoit-etal-observationweightsunlockbulkrnaseqtoolsforzeroinflationandsinglecellapplications-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{van2018observation,\n  title={Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications},\n  author={Van den Berge, Koen and Perraudeau, Fanny and Soneson, Charlotte and Love, Michael I. and Risso, Davide and Vert, Jean-Philippe and Robinson, Mark D. and Dudoit, Sandrine and Clement, Lieven},\n  journal={Genome Biology},\n  volume={19},\n  year={2018}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"righelli-koberstein-zhang-angelini-peixoto-risso-differentialenrichedscan2descan2afastpipelineforbroadpeakanalysis-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Righelli, D.; Koberstein, J.; Zhang, N.; Angelini, C.; Peixoto, L.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  Technical Report PeerJ Preprints,  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/righelli-koberstein-zhang-angelini-peixoto-risso-differentialenrichedscan2descan2afastpipelineforbroadpeakanalysis-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('righelli-koberstein-zhang-angelini-peixoto-risso-differentialenrichedscan2descan2afastpipelineforbroadpeakanalysis-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@techreport{righelli2018differential,\n  title={Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis},\n  author={Righelli, Dario and Koberstein, John and Zhang, Nancy and Angelini, Claudia and Peixoto, Lucia and Risso, Davide},\n  year={2018},\n  institution={PeerJ Preprints}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2017\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2017')\"\n      onkeypress=\"toggleGroup('group_2017')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2017</span>\n      <span class=\"bibbase_group_count\">\n        \n        (5)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"choi-lin-risso-chen-kim-tan-li-wu-etal-deficiencyofmicrornamir34aexpandscellfatepotentialinpluripotentstemcells-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Choi, Y. J.; Lin, C.; Risso, D.; Chen, S.; Kim, T. A.; Tan, M. H.; Li, J. B.; Wu, Y.; Chen, C.; Xuan, Z.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Science</i>, 355(6325): eaag1927.  2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/choi-lin-risso-chen-kim-tan-li-wu-etal-deficiencyofmicrornamir34aexpandscellfatepotentialinpluripotentstemcells-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('choi-lin-risso-chen-kim-tan-li-wu-etal-deficiencyofmicrornamir34aexpandscellfatepotentialinpluripotentstemcells-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{choi2017deficiency,\n  title={Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells},\n  author={Choi, Yong Jin and Lin, Chao-Po and Risso, Davide and Chen, Sean and Kim, Thomas Aquinas and Tan, Meng How and Li, Jin Billy and Wu, Yalei and Chen, Caifu and Xuan, Zhenyu and others},\n  journal={Science},\n  volume={355},\n  number={6325},\n  pages={eaag1927},\n  year={2017},\n  publisher={American Association for the Advancement of Science}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"fletcher-das-gadye-street-baudhuin-wagner-cole-flores-etal-deconstructingolfactorystemcelltrajectoriesatsinglecellresolution-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Deconstructing olfactory stem cell trajectories at single-cell resolution.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Fletcher, R. B; Das, D.; Gadye, L.; Street, K. N; Baudhuin, A.; Wagner, A.; Cole, M. B; Flores, Q.; Choi, Y. G.; Yosef, N.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Cell Stem Cell</i>, 20(6): 817–830.  2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/fletcher-das-gadye-street-baudhuin-wagner-cole-flores-etal-deconstructingolfactorystemcelltrajectoriesatsinglecellresolution-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('fletcher-das-gadye-street-baudhuin-wagner-cole-flores-etal-deconstructingolfactorystemcelltrajectoriesatsinglecellresolution-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{fletcher2017deconstructing,\n  title={Deconstructing olfactory stem cell trajectories at single-cell resolution},\n  author={Fletcher, Russell B and Das, Diya and Gadye, Levi and Street, Kelly N and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Flores, Quetzal and Choi, Yoon Gi and Yosef, Nir and others},\n  journal={Cell Stem Cell},\n  volume={20},\n  number={6},\n  pages={817--830},\n  year={2017},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"vallejos-risso-scialdone-dudoit-marioni-normalizingsinglecellrnasequencingdatachallengesandopportunities-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Normalizing single-cell RNA sequencing data: challenges and opportunities.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Vallejos, C. A; Risso, D.; Scialdone, A.; Dudoit, S.;  and Marioni, J. C\n</span>\n\n  \n\n</span>\n\n  <i>Nature Methods</i>, 14(6): 565–571.  2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/vallejos-risso-scialdone-dudoit-marioni-normalizingsinglecellrnasequencingdatachallengesandopportunities-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('vallejos-risso-scialdone-dudoit-marioni-normalizingsinglecellrnasequencingdatachallengesandopportunities-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{vallejos2017normalizing,\n  title={Normalizing single-cell RNA sequencing data: challenges and opportunities},\n  author={Vallejos, Catalina A and Risso, Davide and Scialdone, Antonio and Dudoit, Sandrine and Marioni, John C},\n  journal={Nature Methods},\n  volume={14},\n  number={6},\n  pages={565--571},\n  year={2017},\n  publisher={Nature Publishing Group US New York}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"perraudeau-risso-street-purdom-dudoit-bioconductorworkflowforsinglecellrnasequencingnormalizationdimensionalityreductionclusteringandlineageinference-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Perraudeau, F.; Risso, D.; Street, K.; Purdom, E.;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>F1000Research</i>, 6: 1158.  2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/perraudeau-risso-street-purdom-dudoit-bioconductorworkflowforsinglecellrnasequencingnormalizationdimensionalityreductionclusteringandlineageinference-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('perraudeau-risso-street-purdom-dudoit-bioconductorworkflowforsinglecellrnasequencingnormalizationdimensionalityreductionclusteringandlineageinference-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{perraudeau2017bioconductor,\n  title={Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference},\n  author={Perraudeau, Fanny and Risso, Davide and Street, Kelly and Purdom, Elizabeth and Dudoit, Sandrine},\n  journal={F1000Research},\n  volume={6},\n  pages={1158},\n  year={2017}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"gadye-das-sanchez-street-baudhuin-wagner-cole-choi-etal-injuryactivatestransientolfactorystemcellstateswithdiverselineagecapacities-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Injury activates transient olfactory stem cell states with diverse lineage capacities.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Gadye, L.; Das, D.; Sanchez, M. A; Street, K.; Baudhuin, A.; Wagner, A.; Cole, M. B; Choi, Y. G.; Yosef, N.; Purdom, E.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Cell Stem Cell</i>, 21(6): 775–790.  2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/gadye-das-sanchez-street-baudhuin-wagner-cole-choi-etal-injuryactivatestransientolfactorystemcellstateswithdiverselineagecapacities-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('gadye-das-sanchez-street-baudhuin-wagner-cole-choi-etal-injuryactivatestransientolfactorystemcellstateswithdiverselineagecapacities-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{gadye2017injury,\n  title={Injury activates transient olfactory stem cell states with diverse lineage capacities},\n  author={Gadye, Levi and Das, Diya and Sanchez, Michael A and Street, Kelly and Baudhuin, Ariane and Wagner, Allon and Cole, Michael B and Choi, Yoon Gi and Yosef, Nir and Purdom, Elizabeth and others},\n  journal={Cell Stem Cell},\n  volume={21},\n  number={6},\n  pages={775--790},\n  year={2017},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2016\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2016')\"\n      onkeypress=\"toggleGroup('group_2016')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2016</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"revelli-paparo-bacigalupo-puppo-furnari-conforti-binda-savarino-etal-comparisonofcomputedtomographyandmagneticresonanceimaginginthediscriminationofintraperitonealandextraperitonealrectalcancerinitialexperience-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Revelli, M.; Paparo, F.; Bacigalupo, L.; Puppo, C.; Furnari, M.; Conforti, C.; Binda, G. A.; Savarino, E.; Risso, D.;  and Rollandi, G. A.\n</span>\n\n  \n\n</span>\n\n  <i>Clinical Imaging</i>, 40(1): 57–62.  2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/revelli-paparo-bacigalupo-puppo-furnari-conforti-binda-savarino-etal-comparisonofcomputedtomographyandmagneticresonanceimaginginthediscriminationofintraperitonealandextraperitonealrectalcancerinitialexperience-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('revelli-paparo-bacigalupo-puppo-furnari-conforti-binda-savarino-etal-comparisonofcomputedtomographyandmagneticresonanceimaginginthediscriminationofintraperitonealandextraperitonealrectalcancerinitialexperience-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{revelli2016comparison,\n  title={Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience},\n  author={Revelli, Matteo and Paparo, Francesco and Bacigalupo, Lorenzo and Puppo, Cristina and Furnari, Manuele and Conforti, Cristina and Binda, Gian Andrea and Savarino, Edoardo and Risso, Davide and Rollandi, Gian Andrea},\n  journal={Clinical Imaging},\n  volume={40},\n  number={1},\n  pages={57--62},\n  year={2016},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"poplawski-peixoto-porcari-wimmer-mcnally-mizuno-giese-chatterjee-etal-contextualfearconditioninginducesdifferentialalternativesplicing-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Contextual fear conditioning induces differential alternative splicing.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Poplawski, S. G; Peixoto, L.; Porcari, G. S; Wimmer, M. E; McNally, A. G; Mizuno, K.; Giese, K P.; Chatterjee, S.; Koberstein, J. N; Risso, D.;  and others\n</span>\n\n  \n\n</span>\n\n  <i>Neurobiology of Learning and Memory</i>, 134: 221–235.  2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/poplawski-peixoto-porcari-wimmer-mcnally-mizuno-giese-chatterjee-etal-contextualfearconditioninginducesdifferentialalternativesplicing-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('poplawski-peixoto-porcari-wimmer-mcnally-mizuno-giese-chatterjee-etal-contextualfearconditioninginducesdifferentialalternativesplicing-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{poplawski2016contextual,\n  title={Contextual fear conditioning induces differential alternative splicing},\n  author={Poplawski, Shane G and Peixoto, Lucia and Porcari, Giulia S and Wimmer, Mathieu E and McNally, Anna G and Mizuno, Keiko and Giese, K Peter and Chatterjee, Snehajyoti and Koberstein, John N and Risso, Davide and others},\n  journal={Neurobiology of Learning and Memory},\n  volume={134},\n  pages={221--235},\n  year={2016},\n  publisher={Academic Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"gerstner-koberstein-watson-zapero-risso-speed-frank-peixoto-removalofunwantedvariationrevealsnovelpatternsofgeneexpressionlinkedtosleephomeostasisinmurinecortex-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Gerstner, J. R; Koberstein, J. N; Watson, A. J; Zapero, N.; Risso, D.; Speed, T. P; Frank, M. G;  and Peixoto, L.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Genomics</i>, 17(Suppl 8): 727.  2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/gerstner-koberstein-watson-zapero-risso-speed-frank-peixoto-removalofunwantedvariationrevealsnovelpatternsofgeneexpressionlinkedtosleephomeostasisinmurinecortex-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('gerstner-koberstein-watson-zapero-risso-speed-frank-peixoto-removalofunwantedvariationrevealsnovelpatternsofgeneexpressionlinkedtosleephomeostasisinmurinecortex-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{gerstner2016removal,\n  title={Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex},\n  author={Gerstner, Jason R and Koberstein, John N and Watson, Adam J and Zapero, Nikolai and Risso, Davide and Speed, Terence P and Frank, Marcos G and Peixoto, Lucia},\n  journal={BMC Genomics},\n  volume={17},\n  number={Suppl 8},\n  pages={727},\n  year={2016},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2015\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2015')\"\n      onkeypress=\"toggleGroup('group_2015')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2015</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"peixoto-risso-poplawski-wimmer-speed-wood-abel-howdataanalysisaffectspowerreproducibilityandbiologicalinsightofrnaseqstudiesincomplexdatasets-2015\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Peixoto, L.; Risso, D.; Poplawski, S. G; Wimmer, M. E; Speed, T. P; Wood, M. A;  and Abel, T.\n</span>\n\n  \n\n</span>\n\n  <i>Nucleic Acids Research</i>, 43(16): 7664–7674.  2015.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/peixoto-risso-poplawski-wimmer-speed-wood-abel-howdataanalysisaffectspowerreproducibilityandbiologicalinsightofrnaseqstudiesincomplexdatasets-2015\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('peixoto-risso-poplawski-wimmer-speed-wood-abel-howdataanalysisaffectspowerreproducibilityandbiologicalinsightofrnaseqstudiesincomplexdatasets-2015')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{peixoto2015data,\n  title={How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets},\n  author={Peixoto, Lucia and Risso, Davide and Poplawski, Shane G and Wimmer, Mathieu E and Speed, Terence P and Wood, Marcelo A and Abel, Ted},\n  journal={Nucleic Acids Research},\n  volume={43},\n  number={16},\n  pages={7664--7674},\n  year={2015},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2014\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2014')\"\n      onkeypress=\"toggleGroup('group_2014')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2014</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"ferreira-wilson-choi-risso-dudoit-speed-ngai-silencingofodorantreceptorgenesbygproteinsignalingensurestheexpressionofoneodorantreceptorperolfactorysensoryneuron-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Silencing of odorant receptor genes by G protein $β$$γ$ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Ferreira, T.; Wilson, S. R; Choi, Y. G.; Risso, D.; Dudoit, S.; Speed, T. P;  and Ngai, J.\n</span>\n\n  \n\n</span>\n\n  <i>Neuron</i>, 81(4): 847–859.  2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/ferreira-wilson-choi-risso-dudoit-speed-ngai-silencingofodorantreceptorgenesbygproteinsignalingensurestheexpressionofoneodorantreceptorperolfactorysensoryneuron-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('ferreira-wilson-choi-risso-dudoit-speed-ngai-silencingofodorantreceptorgenesbygproteinsignalingensurestheexpressionofoneodorantreceptorperolfactorysensoryneuron-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{ferreira2014silencing,\n  title={Silencing of odorant receptor genes by G protein $\\beta$$\\gamma$ signaling ensures the expression of one odorant receptor per olfactory sensory neuron},\n  author={Ferreira, Todd and Wilson, Sarah R and Choi, Yoon Gi and Risso, Davide and Dudoit, Sandrine and Speed, Terence P and Ngai, John},\n  journal={Neuron},\n  volume={81},\n  number={4},\n  pages={847--859},\n  year={2014},\n  publisher={Elsevier}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-ngai-speed-dudoit-theroleofspikeinstandardsinthenormalizationofrnaseq-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  The role of spike-in standards in the normalization of RNA-seq.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Ngai, J.; Speed, T. P;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  In <i>Statistical Analysis of Next Generation Sequencing Data</i>, pages 169–190. Springer International Publishing Cham,  2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-ngai-speed-dudoit-theroleofspikeinstandardsinthenormalizationofrnaseq-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-ngai-speed-dudoit-theroleofspikeinstandardsinthenormalizationofrnaseq-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@incollection{risso2014role,\n  title={The role of spike-in standards in the normalization of RNA-seq},\n  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},\n  booktitle={Statistical Analysis of Next Generation Sequencing Data},\n  pages={169--190},\n  year={2014},\n  publisher={Springer International Publishing Cham}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-ngai-speed-dudoit-normalizationofrnaseqdatausingfactoranalysisofcontrolgenesorsamples-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Normalization of RNA-seq data using factor analysis of control genes or samples.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Ngai, J.; Speed, T. P;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>Nature Biotechnology</i>, 32(9): 896–902.  2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-ngai-speed-dudoit-normalizationofrnaseqdatausingfactoranalysisofcontrolgenesorsamples-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-ngai-speed-dudoit-normalizationofrnaseqdatausingfactoranalysisofcontrolgenesorsamples-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2014normalization,\n  title={Normalization of RNA-seq data using factor analysis of control genes or samples},\n  author={Risso, Davide and Ngai, John and Speed, Terence P and Dudoit, Sandrine},\n  journal={Nature Biotechnology},\n  volume={32},\n  number={9},\n  pages={896--902},\n  year={2014},\n  publisher={Nature Publishing Group}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2012\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2012')\"\n      onkeypress=\"toggleGroup('group_2012')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2012</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"risso-sales-romualdi-chiogna-ahierarchicalbayesianmodelforrnaseqdata-2012\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A hierarchical Bayesian model for RNA-Seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Sales, G.; Romualdi, C.;  and Chiogna, M.\n</span>\n\n  \n\n</span>\n\n  In <i>Complex Models and Computational Methods in Statistics</i>, pages 215–227. Springer Milan Milano,  2012.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-sales-romualdi-chiogna-ahierarchicalbayesianmodelforrnaseqdata-2012\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-sales-romualdi-chiogna-ahierarchicalbayesianmodelforrnaseqdata-2012')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@incollection{risso2012hierarchical,\n  title={A hierarchical Bayesian model for RNA-Seq data},\n  author={Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Chiogna, Monica},\n  booktitle={Complex Models and Computational Methods in Statistics},\n  pages={215--227},\n  year={2012},\n  publisher={Springer Milan Milano}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2011\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2011')\"\n      onkeypress=\"toggleGroup('group_2011')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2011</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"debin-risso-anovelapproachtotheclusteringofmicroarraydatavianonparametricdensityestimation-2011\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A novel approach to the clustering of microarray data via nonparametric density estimation.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  De Bin, R.;  and Risso, D.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 12(1): 49.  2011.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/debin-risso-anovelapproachtotheclusteringofmicroarraydatavianonparametricdensityestimation-2011\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('debin-risso-anovelapproachtotheclusteringofmicroarraydatavianonparametricdensityestimation-2011')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{de2011novel,\n  title={A novel approach to the clustering of microarray data via nonparametric density estimation},\n  author={De Bin, Riccardo and Risso, Davide},\n  journal={BMC Bioinformatics},\n  volume={12},\n  number={1},\n  pages={49},\n  year={2011},\n  publisher={BioMed Central Ltd}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"martini-risso-sales-romualdi-lanfranchi-cagnin-statisticaltestofexpressionpatternstepathanewstrategytointegrategeneexpressiondatawithgenomicinformationinindividualandmetaanalysisstudies-2011\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Statistical test of expression pattern (stepath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Martini, P.; Risso, D.; Sales, G.; Romualdi, C.; Lanfranchi, G.;  and Cagnin, S.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 12(1): 92.  2011.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/martini-risso-sales-romualdi-lanfranchi-cagnin-statisticaltestofexpressionpatternstepathanewstrategytointegrategeneexpressiondatawithgenomicinformationinindividualandmetaanalysisstudies-2011\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('martini-risso-sales-romualdi-lanfranchi-cagnin-statisticaltestofexpressionpatternstepathanewstrategytointegrategeneexpressiondatawithgenomicinformationinindividualandmetaanalysisstudies-2011')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{martini2011statistical,\n  title={Statistical test of expression pattern (stepath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies},\n  author={Martini, Paolo and Risso, Davide and Sales, Gabriele and Romualdi, Chiara and Lanfranchi, Gerolamo and Cagnin, Stefano},\n  journal={BMC Bioinformatics},\n  volume={12},\n  number={1},\n  pages={92},\n  year={2011},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-schwartz-sherlock-dudoit-gccontentnormalizationforrnaseqdata-2011\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  GC-content normalization for RNA-Seq data.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Schwartz, K.; Sherlock, G.;  and Dudoit, S.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 12(1): 480.  2011.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-schwartz-sherlock-dudoit-gccontentnormalizationforrnaseqdata-2011\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-schwartz-sherlock-dudoit-gccontentnormalizationforrnaseqdata-2011')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2011gc,\n  title={GC-content normalization for RNA-Seq data},\n  author={Risso, Davide and Schwartz, Katja and Sherlock, Gavin and Dudoit, Sandrine},\n  journal={BMC Bioinformatics},\n  volume={12},\n  number={1},\n  pages={480},\n  year={2011},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2009\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2009')\"\n      onkeypress=\"toggleGroup('group_2009')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2009</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"bisognin-coppe-ferrari-risso-romualdi-bicciato-bortoluzzi-amadmanannotationbasedmicroarraydatametaanalysistool-2009\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A-MADMAN: annotation-based microarray data meta-analysis tool.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Bisognin, A.; Coppe, A.; Ferrari, F.; Risso, D.; Romualdi, C.; Bicciato, S.;  and Bortoluzzi, S.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 10(1): 201.  2009.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/bisognin-coppe-ferrari-risso-romualdi-bicciato-bortoluzzi-amadmanannotationbasedmicroarraydatametaanalysistool-2009\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('bisognin-coppe-ferrari-risso-romualdi-bicciato-bortoluzzi-amadmanannotationbasedmicroarraydatametaanalysistool-2009')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{bisognin2009madman,\n  title={A-MADMAN: annotation-based microarray data meta-analysis tool},\n  author={Bisognin, Andrea and Coppe, Alessandro and Ferrari, Francesco and Risso, Davide and Romualdi, Chiara and Bicciato, Silvio and Bortoluzzi, Stefania},\n  journal={BMC Bioinformatics},\n  volume={10},\n  number={1},\n  pages={201},\n  year={2009},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"chiogna-massa-risso-romualdi-acomparisononeffectsofnormalisationsinthedetectionofdifferentiallyexpressedgenes-2009\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A comparison on effects of normalisations in the detection of differentially expressed genes.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Chiogna, M.; Massa, M. S.; Risso, D.;  and Romualdi, C.\n</span>\n\n  \n\n</span>\n\n  <i>BMC Bioinformatics</i>, 10(1): 61.  2009.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/chiogna-massa-risso-romualdi-acomparisononeffectsofnormalisationsinthedetectionofdifferentiallyexpressedgenes-2009\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('chiogna-massa-risso-romualdi-acomparisononeffectsofnormalisationsinthedetectionofdifferentiallyexpressedgenes-2009')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{chiogna2009comparison,\n  title={A comparison on effects of normalisations in the detection of differentially expressed genes},\n  author={Chiogna, Monica and Massa, Maria Sofia and Risso, Davide and Romualdi, Chiara},\n  journal={BMC Bioinformatics},\n  volume={10},\n  number={1},\n  pages={61},\n  year={2009},\n  publisher={BioMed Central London}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"risso-massa-chiogna-romualdi-amodifiedloessnormalizationappliedtomicrornaarraysacomparativeevaluation-2009\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Risso, D.; Massa, M. S.; Chiogna, M.;  and Romualdi, C.\n</span>\n\n  \n\n</span>\n\n  <i>Bioinformatics</i>, 25(20): 2685–2691.  2009.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/risso-massa-chiogna-romualdi-amodifiedloessnormalizationappliedtomicrornaarraysacomparativeevaluation-2009\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('risso-massa-chiogna-romualdi-amodifiedloessnormalizationappliedtomicrornaarraysacomparativeevaluation-2009')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{risso2009modified,\n  title={A modified LOESS normalization applied to microRNA arrays: a comparative evaluation},\n  author={Risso, Davide and Massa, Maria Sofia and Chiogna, Monica and Romualdi, Chiara},\n  journal={Bioinformatics},\n  volume={25},\n  number={20},\n  pages={2685--2691},\n  year={2009},\n  publisher={Oxford University Press}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n\n\n\n  </div>\n\n\n  <!-- Modal -->\n\n  <!-- <iframe id=\"bibbase_network_frame\" -->\n  <!--         src=\"//bibbase.org/network/control\" -->\n  <!--         style=\"display: none;\"> -->\n  <!-- </iframe> -->\n\n</div>\n"}; document.write(bibbase_data.data);