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\n  \n 2021\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n An atlas of protein-protein interactions across mouse tissues.\n \n \n \n\n\n \n Skinnider, M. A; Scott, N. E; Prudova, A.; Kerr, C. H; Stoynov, N.; Stacey, R G.; Chan, Q. W.; Rattray, D.; Gsponer, J.; and Foster, L. J\n\n\n \n\n\n\n Cell. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n
@article{skinnider2021atlas,\r\n  title={An atlas of protein-protein interactions across mouse tissues},\r\n  author={Skinnider, Michael A and Scott, Nichollas E and Prudova, Anna and Kerr, Craig H and Stoynov, Nikolay and Stacey, R Greg and Chan, Queenie WT and Rattray, David and Gsponer, J{\\"o}rg and Foster, Leonard J},\r\n  journal={Cell},\r\n  year={2021},\r\n  publisher={Cell Press}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n On the robustness of graph-based clustering to random network alterations.\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; and Foster, L. J\n\n\n \n\n\n\n Molecular & Cellular Proteomics, 20: 100002. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2021robustness,\r\n  title={On the robustness of graph-based clustering to random network alterations},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Foster, Leonard J},\r\n  journal={Molecular \\& Cellular Proteomics},\r\n  volume={20},\r\n  pages={100002},\r\n  year={2021},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n PrInCE: an R/Bioconductor package for protein–protein interaction network inference from co-fractionation mass spectrometry data.\n \n \n \n\n\n \n Skinnider, M. A; Cai, C.; Stacey, R G.; and Foster, L. J\n\n\n \n\n\n\n Bioinformatics, 1: 3. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2021prince,\r\n  title={PrInCE: an R/Bioconductor package for protein--protein interaction network inference from co-fractionation mass spectrometry data},\r\n  author={Skinnider, Michael A and Cai, Charley and Stacey, R Greg and Foster, Leonard J},\r\n  journal={Bioinformatics},\r\n  volume={1},\r\n  pages={3},\r\n  year={2021}\r\n}\r\n\r\n
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\n  \n 2020\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n Next-generation interactomics: considerations for the use of co-elution to measure protein interaction networks.\n \n \n \n\n\n \n Salas, D.; Stacey, R G.; Akinlaja, M.; and Foster, L. J\n\n\n \n\n\n\n Molecular & Cellular Proteomics, 19(1): 1–10. 2020.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{salas2020next,\r\n  title={Next-generation interactomics: considerations for the use of co-elution to measure protein interaction networks},\r\n  author={Salas, Daniela and Stacey, R Greg and Akinlaja, Mopelola and Foster, Leonard J},\r\n  journal={Molecular \\& Cellular Proteomics},\r\n  volume={19},\r\n  number={1},\r\n  pages={1--10},\r\n  year={2020},\r\n  publisher={ASBMB}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Dynamic rewiring of the human interactome by interferon signaling.\n \n \n \n\n\n \n Kerr, C. H; Skinnider, M. A; Andrews, D. D.; Madero, A. M; Chan, Q. W.; Stacey, R G.; Stoynov, N.; Jan, E.; and Foster, L. J\n\n\n \n\n\n\n Genome biology, 21(1): 1–36. 2020.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{kerr2020dynamic,\r\n  title={Dynamic rewiring of the human interactome by interferon signaling},\r\n  author={Kerr, Craig H and Skinnider, Michael A and Andrews, Daniel DT and Madero, Angel M and Chan, Queenie WT and Stacey, R Greg and Stoynov, Nikolay and Jan, Eric and Foster, Leonard J},\r\n  journal={Genome biology},\r\n  volume={21},\r\n  number={1},\r\n  pages={1--36},\r\n  year={2020},\r\n  publisher={BioMed Central}\r\n}\r\n\r\n
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\n  \n 2019\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n Dynamics of protein complex components.\n \n \n \n\n\n \n Rattray, D. G; and Foster, L. J\n\n\n \n\n\n\n Current Opinion in Chemical Biology, 48: 81–85. 2019.\n \n\n\n\n
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@article{rattray2019dynamics,\r\n  title={Dynamics of protein complex components},\r\n  author={Rattray, David G and Foster, Leonard J},\r\n  journal={Current Opinion in Chemical Biology},\r\n  volume={48},\r\n  pages={81--85},\r\n  year={2019},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Rewiring of the human mitochondrial interactome during neuronal reprogramming reveals regulators of the respirasome and neurogenesis.\n \n \n \n\n\n \n Moutaoufik, M. T.; Malty, R.; Amin, S.; Zhang, Q.; Phanse, S.; Gagarinova, A.; Zilocchi, M.; Hoell, L.; Minic, Z.; Gagarinova, M.; and others\n\n\n \n\n\n\n Iscience, 19: 1114–1132. 2019.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{moutaoufik2019rewiring,\r\n  title={Rewiring of the human mitochondrial interactome during neuronal reprogramming reveals regulators of the respirasome and neurogenesis},\r\n  author={Moutaoufik, Mohamed Taha and Malty, Ramy and Amin, Shahreen and Zhang, Qingzhou and Phanse, Sadhna and Gagarinova, Alla and Zilocchi, Mara and Hoell, Larissa and Minic, Zoran and Gagarinova, Maria and others},\r\n  journal={Iscience},\r\n  volume={19},\r\n  pages={1114--1132},\r\n  year={2019},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n  \n 2018\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n Genomic data integration systematically biases interactome mapping.\n \n \n \n\n\n \n Skinnider, M. A; Stacey, R G.; and Foster, L. J\n\n\n \n\n\n\n PLoS computational biology, 14(10): e1006474. 2018.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2018genomic,\r\n  title={Genomic data integration systematically biases interactome mapping},\r\n  author={Skinnider, Michael A and Stacey, R Greg and Foster, Leonard J},\r\n  journal={PLoS computational biology},\r\n  volume={14},\r\n  number={10},\r\n  pages={e1006474},\r\n  year={2018},\r\n  publisher={Public Library of Science San Francisco, CA USA}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Context-specific interactions in literature-curated protein interaction databases.\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; Chik, J. H.; and Foster, L. J\n\n\n \n\n\n\n BMC genomics, 19(1): 758. 2018.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2018context,\r\n  title={Context-specific interactions in literature-curated protein interaction databases},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Chik, Jenny HL and Foster, Leonard J},\r\n  journal={BMC genomics},\r\n  volume={19},\r\n  number={1},\r\n  pages={758},\r\n  year={2018},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n  \n 2017\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n Comprehensive identification of mRNA-binding proteins of Leishmania donovani by interactome capture.\n \n \n \n\n\n \n Nandan, D.; Thomas, S. A; Nguyen, A.; Moon, K.; Foster, L. J; and Reiner, N. E\n\n\n \n\n\n\n PLoS One, 12(1): e0170068. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{nandan2017comprehensive,\r\n  title={Comprehensive identification of mRNA-binding proteins of Leishmania donovani by interactome capture},\r\n  author={Nandan, Devki and Thomas, Sneha A and Nguyen, Anne and Moon, Kyung-Mee and Foster, Leonard J and Reiner, Neil E},\r\n  journal={PLoS One},\r\n  volume={12},\r\n  number={1},\r\n  pages={e0170068},\r\n  year={2017},\r\n  publisher={Public Library of Science San Francisco, CA USA}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Interactome disassembly during apoptosis occurs independent of caspase cleavage.\n \n \n \n\n\n \n Scott, N. E; Rogers, L. D; Prudova, A.; Brown, N. F; Fortelny, N.; Overall, C. M; and Foster, L. J\n\n\n \n\n\n\n Molecular Systems Biology, 13(1): 906. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{scott2017interactome,\r\n  title={Interactome disassembly during apoptosis occurs independent of caspase cleavage},\r\n  author={Scott, Nichollas E and Rogers, Lindsay D and Prudova, Anna and Brown, Nat F and Fortelny, Nikolaus and Overall, Christopher M and Foster, Leonard J},\r\n  journal={Molecular Systems Biology},\r\n  volume={13},\r\n  number={1},\r\n  pages={906},\r\n  year={2017}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; Scott, N. E; and Foster, L. J\n\n\n \n\n\n\n BMC bioinformatics, 18(1): 1–14. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2017rapid,\r\n  title={A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Scott, Nichollas E and Foster, Leonard J},\r\n  journal={BMC bioinformatics},\r\n  volume={18},\r\n  number={1},\r\n  pages={1--14},\r\n  year={2017},\r\n  publisher={BioMed Central}\r\n}\r\n
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\n  \n 2015\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Development of a computational framework for the analysis of protein correlation profiling and spatial proteomics experiments.\n \n \n \n\n\n \n Scott, N. E; Brown, L. M; Kristensen, A. R; and Foster, L. J\n\n\n \n\n\n\n Journal of proteomics, 118: 112–129. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{scott2015development,\r\n  title={Development of a computational framework for the analysis of protein correlation profiling and spatial proteomics experiments},\r\n  author={Scott, Nichollas E and Brown, Lyda M and Kristensen, Anders R and Foster, Leonard J},\r\n  journal={Journal of proteomics},\r\n  volume={118},\r\n  pages={112--129},\r\n  year={2015},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Protein correlation profiling-SILAC to study protein-protein interactions.\n \n \n \n\n\n \n Kristensen, A. R; and Foster, L. J\n\n\n \n\n\n\n In Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC), pages 263–270. Springer, 2014.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@incollection{kristensen2014protein,\r\n  title={Protein correlation profiling-SILAC to study protein-protein interactions},\r\n  author={Kristensen, Anders R and Foster, Leonard J},\r\n  booktitle={Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)},\r\n  pages={263--270},\r\n  year={2014},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n High throughput strategies for probing the different organizational levels of protein interaction networks.\n \n \n \n\n\n \n Kristensen, A. R; and Foster, L. J\n\n\n \n\n\n\n Molecular bioSystems, 9(9): 2201–2212. 2013.\n \n\n\n\n
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@article{kristensen2013high,\r\n  title={High throughput strategies for probing the different organizational levels of protein interaction networks},\r\n  author={Kristensen, Anders R and Foster, Leonard J},\r\n  journal={Molecular bioSystems},\r\n  volume={9},\r\n  number={9},\r\n  pages={2201--2212},\r\n  year={2013},\r\n  publisher={Royal Society of Chemistry}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Protein synthesis rate is the predominant regulator of protein expression during differentiation.\n \n \n \n\n\n \n Kristensen, A. R; Gsponer, J.; and Foster, L. J\n\n\n \n\n\n\n Molecular systems biology, 9(1): 689. 2013.\n \n\n\n\n
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@article{kristensen2013protein,\r\n  title={Protein synthesis rate is the predominant regulator of protein expression during differentiation},\r\n  author={Kristensen, Anders R and Gsponer, Joerg and Foster, Leonard J},\r\n  journal={Molecular systems biology},\r\n  volume={9},\r\n  number={1},\r\n  pages={689},\r\n  year={2013},\r\n  publisher={John Wiley \\& Sons, Ltd Chichester, UK}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n A high-throughput approach for measuring temporal changes in the interactome.\n \n \n \n\n\n \n Kristensen, A. R; Gsponer, J.; and Foster, L. J\n\n\n \n\n\n\n Nature methods, 9(9): 907–909. 2012.\n \n\n\n\n
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@article{kristensen2012high,\r\n  title={A high-throughput approach for measuring temporal changes in the interactome},\r\n  author={Kristensen, Anders R and Gsponer, Joerg and Foster, Leonard J},\r\n  journal={Nature methods},\r\n  volume={9},\r\n  number={9},\r\n  pages={907--909},\r\n  year={2012},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Characterizing the Honey Bee Interactome using Mass Spectrometry-Based Proteomics.\n \n \n \n\n\n \n Akinlaja, M.; Stacey, G.; and Foster, L.\n\n\n \n\n\n\n The FASEB Journal, 35. .\n \n\n\n\n
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@article{akinlaja35characterizing,\r\n  title={Characterizing the Honey Bee Interactome using Mass Spectrometry-Based Proteomics},\r\n  author={Akinlaja, Mopelola and Stacey, Greg and Foster, Leonard},\r\n  journal={The FASEB Journal},\r\n  volume={35},\r\n  publisher={Wiley Online Library}\r\n}\r\n\r\n
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