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\n \n\n \n \n \n \n \n \n Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.\n \n \n \n \n\n\n \n Rouan, A., Pousse, M., Djerbi, N., Porro, B., Bourdin, G., Carradec, Q., Hume, B. C., Poulain, J., Le-Hoang, J., Armstrong, E., Agostini, S., Salazar, G., Ruscheweyh, H. J., Aury, J. M., Paz-Garcia, D. A., McMinds, R., Giraud-Panis, M. J., Deshuraud, R., Ottaviani, A., Morini, L. D., Leone, C., Wurzer, L., Tran, J., Zoccola, D., Pey, A., Moulin, C., Boissin, E., Iwankow, G., Romac, S., de Vargas, C., Banaigs, B., Boss, E., Bowler, C., Douville, E., Flores, M., Reynaud, S., Thomas, O. P., Trouble, R., Thurber, R. V., Planes, S., Allemand, D., Pesant, S., Galand, P. E., Wincker, P., Sunagawa, S., Rottinger, E., Furla, P., Voolstra, C. R., Forcioli, D., Lombard, F., & Gilson, E.\n\n\n \n\n\n\n Nat Commun, 14(1): 3038. 2023.\n Rouan, Alice Pousse, Melanie Djerbi, Nadir Porro, Barbara Bourdin, Guillaume Carradec, Quentin Hume, Benjamin Cc Poulain, Julie Le-Hoang, Julie Armstrong, Eric Agostini, Sylvain Salazar, Guillem Ruscheweyh, Hans-Joachim Aury, Jean-Marc Paz-Garcia, David A McMinds, Ryan Giraud-Panis, Marie-Josephe Deshuraud, Romane Ottaviani, Alexandre Morini, Lycia Die Leone, Camille Wurzer, Lia Tran, Jessica Zoccola, Didier Pey, Alexis Moulin, Clementine Boissin, Emilie Iwankow, Guillaume Romac, Sarah de Vargas, Colomban Banaigs, Bernard Boss, Emmanuel Bowler, Chris Douville, Eric Flores, Michel Reynaud, Stephanie Thomas, Olivier P Trouble, Romain Thurber, Rebecca Vega Planes, Serge Allemand, Denis Pesant, Stephane Galand, Pierre E Wincker, Patrick Sunagawa, Shinichi Rottinger, Eric Furla, Paola Voolstra, Christian R Forcioli, Didier Lombard, Fabien Gilson, Eric eng ANR-17-CE02-0020)/Agence Nationale de la Recherche (French National Research Agency)/ England 2023/06/02 Nat Commun. 2023 Jun 1;14(1):3038. doi: 10.1038/s41467-023-38499-1.\n\n\n\n
\n\n\n\n \n \n \"TelomerePaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n  \n \n 5 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n \n \n\n\n\n
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@article{RN358,\r\n   author = {Rouan, A. and Pousse, M. and Djerbi, N. and Porro, B. and Bourdin, G. and Carradec, Q. and Hume, B. C. and Poulain, J. and Le-Hoang, J. and Armstrong, E. and Agostini, S. and Salazar, G. and Ruscheweyh, H. J. and Aury, J. M. and Paz-Garcia, D. A. and McMinds, R. and Giraud-Panis, M. J. and Deshuraud, R. and Ottaviani, A. and Morini, L. D. and Leone, C. and Wurzer, L. and Tran, J. and Zoccola, D. and Pey, A. and Moulin, C. and Boissin, E. and Iwankow, G. and Romac, S. and de Vargas, C. and Banaigs, B. and Boss, E. and Bowler, C. and Douville, E. and Flores, M. and Reynaud, S. and Thomas, O. P. and Trouble, R. and Thurber, R. V. and Planes, S. and Allemand, D. and Pesant, S. and Galand, P. E. and Wincker, P. and Sunagawa, S. and Rottinger, E. and Furla, P. and Voolstra, C. R. and Forcioli, D. and Lombard, F. and Gilson, E.},\r\n   title = {Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals},\r\n   journal = {Nat Commun},\r\n   volume = {14},\r\n   number = {1},\r\n   pages = {3038},\r\n   note = {Rouan, Alice\r\nPousse, Melanie\r\nDjerbi, Nadir\r\nPorro, Barbara\r\nBourdin, Guillaume\r\nCarradec, Quentin\r\nHume, Benjamin Cc\r\nPoulain, Julie\r\nLe-Hoang, Julie\r\nArmstrong, Eric\r\nAgostini, Sylvain\r\nSalazar, Guillem\r\nRuscheweyh, Hans-Joachim\r\nAury, Jean-Marc\r\nPaz-Garcia, David A\r\nMcMinds, Ryan\r\nGiraud-Panis, Marie-Josephe\r\nDeshuraud, Romane\r\nOttaviani, Alexandre\r\nMorini, Lycia Die\r\nLeone, Camille\r\nWurzer, Lia\r\nTran, Jessica\r\nZoccola, Didier\r\nPey, Alexis\r\nMoulin, Clementine\r\nBoissin, Emilie\r\nIwankow, Guillaume\r\nRomac, Sarah\r\nde Vargas, Colomban\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nDouville, Eric\r\nFlores, Michel\r\nReynaud, Stephanie\r\nThomas, Olivier P\r\nTrouble, Romain\r\nThurber, Rebecca Vega\r\nPlanes, Serge\r\nAllemand, Denis\r\nPesant, Stephane\r\nGaland, Pierre E\r\nWincker, Patrick\r\nSunagawa, Shinichi\r\nRottinger, Eric\r\nFurla, Paola\r\nVoolstra, Christian R\r\nForcioli, Didier\r\nLombard, Fabien\r\nGilson, Eric\r\neng\r\nANR-17-CE02-0020)/Agence Nationale de la Recherche (French National Research Agency)/\r\nEngland\r\n2023/06/02\r\nNat Commun. 2023 Jun 1;14(1):3038. doi: 10.1038/s41467-023-38499-1.},\r\n   abstract = {Telomeres are environment-sensitive regulators of health and aging. Here,we present telomere DNA length analysis of two reef-building coral genera revealing that the long- and short-term water thermal regime is a key driver of between-colony variation across the Pacific Ocean. Notably, there are differences between the two studied genera. The telomere DNA lengths of the short-lived, more stress-sensitive Pocillopora spp. colonies were largely determined by seasonal temperature variation, whereas those of the long-lived, more stress-resistant Porites spp. colonies were insensitive to seasonal patterns, but rather influenced by past thermal anomalies. These results reveal marked differences in telomere DNA length regulation between two evolutionary distant coral genera exhibiting specific life-history traits. We propose that environmentally regulated mechanisms of telomere maintenance are linked to organismal performances, a matter of paramount importance considering the effects of climate change on health.},\r\n   keywords = {Animals\r\n*Anthozoa/genetics\r\nCoral Reefs\r\nTemperature\r\nSeasons\r\nDNA/genetics},\r\n   ISSN = {2041-1723 (Electronic)\r\n2041-1723 (Linking)},\r\n   DOI = {10.1038/s41467-023-38499-1},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37263999},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Telomeres are environment-sensitive regulators of health and aging. Here,we present telomere DNA length analysis of two reef-building coral genera revealing that the long- and short-term water thermal regime is a key driver of between-colony variation across the Pacific Ocean. Notably, there are differences between the two studied genera. The telomere DNA lengths of the short-lived, more stress-sensitive Pocillopora spp. colonies were largely determined by seasonal temperature variation, whereas those of the long-lived, more stress-resistant Porites spp. colonies were insensitive to seasonal patterns, but rather influenced by past thermal anomalies. These results reveal marked differences in telomere DNA length regulation between two evolutionary distant coral genera exhibiting specific life-history traits. We propose that environmentally regulated mechanisms of telomere maintenance are linked to organismal performances, a matter of paramount importance considering the effects of climate change on health.\n
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\n \n\n \n \n \n \n \n \n Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.\n \n \n \n \n\n\n \n Armstrong, E. J., Le-Hoang, J., Carradec, Q., Aury, J. M., Noel, B., Hume, B. C. C., Voolstra, C. R., Poulain, J., Belser, C., Paz-Garcia, D. A., Cruaud, C., Labadie, K., Da Silva, C., Moulin, C., Boissin, E., Bourdin, G., Iwankow, G., Romac, S., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Flores, M., Forcioli, D., Furla, P., Galand, P. E., Gilson, E., Lombard, F., Pesant, S., Reynaud, S., Sullivan, M. B., Sunagawa, S., Thomas, O. P., Trouble, R., Thurber, R. V., Zoccola, D., Planes, S., Allemand, D., & Wincker, P.\n\n\n \n\n\n\n Nat Commun, 14(1): 3056. 2023.\n Armstrong, Eric J Le-Hoang, Julie Carradec, Quentin Aury, Jean-Marc Noel, Benjamin Hume, Benjamin C C Voolstra, Christian R Poulain, Julie Belser, Caroline Paz-Garcia, David A Cruaud, Corinne Labadie, Karine Da Silva, Corinne Moulin, Clementine Boissin, Emilie Bourdin, Guillaume Iwankow, Guillaume Romac, Sarah Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, Michel Forcioli, Didier Furla, Paola Galand, Pierre E Gilson, Eric Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Sullivan, Matthew B Sunagawa, Shinichi Thomas, Olivier P Trouble, Romain Thurber, Rebecca Vega Zoccola, Didier Planes, Serge Allemand, Denis Wincker, Patrick eng England 2023/06/02 Nat Commun. 2023 Jun 1;14(1):3056. doi: 10.1038/s41467-023-38610-6.\n\n\n\n
\n\n\n\n \n \n \"HostPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n \n \n\n\n\n
\n 
@article{RN357,\r\n   author = {Armstrong, E. J. and Le-Hoang, J. and Carradec, Q. and Aury, J. M. and Noel, B. and Hume, B. C. C. and Voolstra, C. R. and Poulain, J. and Belser, C. and Paz-Garcia, D. A. and Cruaud, C. and Labadie, K. and Da Silva, C. and Moulin, C. and Boissin, E. and Bourdin, G. and Iwankow, G. and Romac, S. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Flores, M. and Forcioli, D. and Furla, P. and Galand, P. E. and Gilson, E. and Lombard, F. and Pesant, S. and Reynaud, S. and Sullivan, M. B. and Sunagawa, S. and Thomas, O. P. and Trouble, R. and Thurber, R. V. and Zoccola, D. and Planes, S. and Allemand, D. and Wincker, P.},\r\n   title = {Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean},\r\n   journal = {Nat Commun},\r\n   volume = {14},\r\n   number = {1},\r\n   pages = {3056},\r\n   note = {Armstrong, Eric J\r\nLe-Hoang, Julie\r\nCarradec, Quentin\r\nAury, Jean-Marc\r\nNoel, Benjamin\r\nHume, Benjamin C C\r\nVoolstra, Christian R\r\nPoulain, Julie\r\nBelser, Caroline\r\nPaz-Garcia, David A\r\nCruaud, Corinne\r\nLabadie, Karine\r\nDa Silva, Corinne\r\nMoulin, Clementine\r\nBoissin, Emilie\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nRomac, Sarah\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nFlores, Michel\r\nForcioli, Didier\r\nFurla, Paola\r\nGaland, Pierre E\r\nGilson, Eric\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nSullivan, Matthew B\r\nSunagawa, Shinichi\r\nThomas, Olivier P\r\nTrouble, Romain\r\nThurber, Rebecca Vega\r\nZoccola, Didier\r\nPlanes, Serge\r\nAllemand, Denis\r\nWincker, Patrick\r\neng\r\nEngland\r\n2023/06/02\r\nNat Commun. 2023 Jun 1;14(1):3056. doi: 10.1038/s41467-023-38610-6.},\r\n   abstract = {Heat waves are causing declines in coral reefs globally. Coral thermal responses depend on multiple, interacting drivers, such as past thermal exposure, endosymbiont community composition, and host genotype. This makes the understanding of their relative roles in adaptive and/or plastic responses crucial for anticipating impacts of future warming. Here, we extracted DNA and RNA from 102 Pocillopora colonies collected from 32 sites on 11 islands across the Pacific Ocean to characterize host-photosymbiont fidelity and to investigate patterns of gene expression across a historical thermal gradient. We report high host-photosymbiont fidelity and show that coral and microalgal gene expression respond to different drivers. Differences in photosymbiotic association had only weak impacts on host gene expression, which was more strongly correlated with the historical thermal environment, whereas, photosymbiont gene expression was largely determined by microalgal lineage. Overall, our results reveal a three-tiered strategy of thermal acclimatization in Pocillopora underpinned by host-photosymbiont specificity, host transcriptomic plasticity, and differential photosymbiotic association under extreme warming.},\r\n   keywords = {Animals\r\nPacific Ocean\r\n*Transcriptome/genetics\r\n*Anthozoa/genetics\r\nAcclimatization/genetics\r\nCoral Reefs},\r\n   ISSN = {2041-1723 (Electronic)\r\n2041-1723 (Linking)},\r\n   DOI = {10.1038/s41467-023-38610-6},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264036},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Heat waves are causing declines in coral reefs globally. Coral thermal responses depend on multiple, interacting drivers, such as past thermal exposure, endosymbiont community composition, and host genotype. This makes the understanding of their relative roles in adaptive and/or plastic responses crucial for anticipating impacts of future warming. Here, we extracted DNA and RNA from 102 Pocillopora colonies collected from 32 sites on 11 islands across the Pacific Ocean to characterize host-photosymbiont fidelity and to investigate patterns of gene expression across a historical thermal gradient. We report high host-photosymbiont fidelity and show that coral and microalgal gene expression respond to different drivers. Differences in photosymbiotic association had only weak impacts on host gene expression, which was more strongly correlated with the historical thermal environment, whereas, photosymbiont gene expression was largely determined by microalgal lineage. Overall, our results reveal a three-tiered strategy of thermal acclimatization in Pocillopora underpinned by host-photosymbiont specificity, host transcriptomic plasticity, and differential photosymbiotic association under extreme warming.\n
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\n \n\n \n \n \n \n \n \n Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes.\n \n \n \n \n\n\n \n Veglia, A. J., Bistolas, K. S. I., Voolstra, C. R., Hume, B. C. C., Ruscheweyh, H. J., Planes, S., Allemand, D., Boissin, E., Wincker, P., Poulain, J., Moulin, C., Bourdin, G., Iwankow, G., Romac, S., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Flores, M., Forcioli, D., Furla, P., Galand, P. E., Gilson, E., Lombard, F., Pesant, S., Reynaud, S., Sunagawa, S., Thomas, O. P., Trouble, R., Zoccola, D., Correa, A. M. S., & Vega Thurber, R. L.\n\n\n \n\n\n\n Commun Biol, 6(1): 566. 2023.\n Veglia, Alex J Bistolas, Kalia S I Voolstra, Christian R Hume, Benjamin C C Ruscheweyh, Hans-Joachim Planes, Serge Allemand, Denis Boissin, Emilie Wincker, Patrick Poulain, Julie Moulin, Clementine Bourdin, Guillaume Iwankow, Guillaume Romac, Sarah Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, Michel Forcioli, Didier Furla, Paola Galand, Pierre E Gilson, Eric Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Sunagawa, Shinichi Thomas, Olivier P Trouble, Romain Zoccola, Didier Correa, Adrienne M S Vega Thurber, Rebecca L eng 1907184/National Science Foundation (NSF)/ 2025457/National Science Foundation (NSF)/ England 2023/06/02 Commun Biol. 2023 Jun 1;6(1):566. doi: 10.1038/s42003-023-04917-9.\n\n\n\n
\n\n\n\n \n \n \"EndogenousPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n \n \n\n\n\n
\n 
@article{RN356,\r\n   author = {Veglia, A. J. and Bistolas, K. S. I. and Voolstra, C. R. and Hume, B. C. C. and Ruscheweyh, H. J. and Planes, S. and Allemand, D. and Boissin, E. and Wincker, P. and Poulain, J. and Moulin, C. and Bourdin, G. and Iwankow, G. and Romac, S. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Flores, M. and Forcioli, D. and Furla, P. and Galand, P. E. and Gilson, E. and Lombard, F. and Pesant, S. and Reynaud, S. and Sunagawa, S. and Thomas, O. P. and Trouble, R. and Zoccola, D. and Correa, A. M. S. and Vega Thurber, R. L.},\r\n   title = {Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes},\r\n   journal = {Commun Biol},\r\n   volume = {6},\r\n   number = {1},\r\n   pages = {566},\r\n   note = {Veglia, Alex J\r\nBistolas, Kalia S I\r\nVoolstra, Christian R\r\nHume, Benjamin C C\r\nRuscheweyh, Hans-Joachim\r\nPlanes, Serge\r\nAllemand, Denis\r\nBoissin, Emilie\r\nWincker, Patrick\r\nPoulain, Julie\r\nMoulin, Clementine\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nRomac, Sarah\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nFlores, Michel\r\nForcioli, Didier\r\nFurla, Paola\r\nGaland, Pierre E\r\nGilson, Eric\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nSunagawa, Shinichi\r\nThomas, Olivier P\r\nTrouble, Romain\r\nZoccola, Didier\r\nCorrea, Adrienne M S\r\nVega Thurber, Rebecca L\r\neng\r\n1907184/National Science Foundation (NSF)/\r\n2025457/National Science Foundation (NSF)/\r\nEngland\r\n2023/06/02\r\nCommun Biol. 2023 Jun 1;6(1):566. doi: 10.1038/s42003-023-04917-9.},\r\n   abstract = {Endogenous viral elements (EVEs) offer insight into the evolutionary histories and hosts of contemporary viruses. This study leveraged DNA metagenomics and genomics to detect and infer the host of a non-retroviral dinoflagellate-infecting +ssRNA virus (dinoRNAV) common in coral reefs. As part of the Tara Pacific Expedition, this study surveyed 269 newly sequenced cnidarians and their resident symbiotic dinoflagellates (Symbiodiniaceae), associated metabarcodes, and publicly available metagenomes, revealing 178 dinoRNAV EVEs, predominantly among hydrocoral-dinoflagellate metagenomes. Putative associations between Symbiodiniaceae and dinoRNAV EVEs were corroborated by the characterization of dinoRNAV-like sequences in 17 of 18 scaffold-scale and one chromosome-scale dinoflagellate genome assembly, flanked by characteristically cellular sequences and in proximity to retroelements, suggesting potential mechanisms of integration. EVEs were not detected in dinoflagellate-free (aposymbiotic) cnidarian genome assemblies, including stony corals, hydrocorals, jellyfish, or seawater. The pervasive nature of dinoRNAV EVEs within dinoflagellate genomes (especially Symbiodinium), as well as their inconsistent within-genome distribution and fragmented nature, suggest ancestral or recurrent integration of this virus with variable conservation. Broadly, these findings illustrate how +ssRNA viruses may obscure their genomes as members of nested symbioses, with implications for host evolution, exaptation, and immunity in the context of reef health and disease.},\r\n   keywords = {Animals\r\n*Dinoflagellida/genetics\r\nGenome\r\n*Anthozoa/genetics\r\n*RNA Viruses/genetics\r\nCoral Reefs},\r\n   ISSN = {2399-3642 (Electronic)\r\n2399-3642 (Linking)},\r\n   DOI = {10.1038/s42003-023-04917-9},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264063},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Endogenous viral elements (EVEs) offer insight into the evolutionary histories and hosts of contemporary viruses. This study leveraged DNA metagenomics and genomics to detect and infer the host of a non-retroviral dinoflagellate-infecting +ssRNA virus (dinoRNAV) common in coral reefs. As part of the Tara Pacific Expedition, this study surveyed 269 newly sequenced cnidarians and their resident symbiotic dinoflagellates (Symbiodiniaceae), associated metabarcodes, and publicly available metagenomes, revealing 178 dinoRNAV EVEs, predominantly among hydrocoral-dinoflagellate metagenomes. Putative associations between Symbiodiniaceae and dinoRNAV EVEs were corroborated by the characterization of dinoRNAV-like sequences in 17 of 18 scaffold-scale and one chromosome-scale dinoflagellate genome assembly, flanked by characteristically cellular sequences and in proximity to retroelements, suggesting potential mechanisms of integration. EVEs were not detected in dinoflagellate-free (aposymbiotic) cnidarian genome assemblies, including stony corals, hydrocorals, jellyfish, or seawater. The pervasive nature of dinoRNAV EVEs within dinoflagellate genomes (especially Symbiodinium), as well as their inconsistent within-genome distribution and fragmented nature, suggest ancestral or recurrent integration of this virus with variable conservation. Broadly, these findings illustrate how +ssRNA viruses may obscure their genomes as members of nested symbioses, with implications for host evolution, exaptation, and immunity in the context of reef health and disease.\n
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\n \n\n \n \n \n \n \n \n Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.\n \n \n \n \n\n\n \n Hochart, C., Paoli, L., Ruscheweyh, H. J., Salazar, G., Boissin, E., Romac, S., Poulain, J., Bourdin, G., Iwankow, G., Moulin, C., Ziegler, M., Porro, B., Armstrong, E. J., Hume, B. C. C., Aury, J. M., Pogoreutz, C., Paz-Garcia, D. A., Nugues, M. M., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Flores, M., Forcioli, D., Furla, P., Gilson, E., Lombard, F., Pesant, S., Reynaud, S., Thomas, O. P., Trouble, R., Wincker, P., Zoccola, D., Allemand, D., Planes, S., Thurber, R. V., Voolstra, C. R., Sunagawa, S., & Galand, P. E.\n\n\n \n\n\n\n Nat Commun, 14(1): 3037. 2023.\n Hochart, Corentin Paoli, Lucas Ruscheweyh, Hans-Joachim Salazar, Guillem Boissin, Emilie Romac, Sarah Poulain, Julie Bourdin, Guillaume Iwankow, Guillaume Moulin, Clementine Ziegler, Maren Porro, Barbara Armstrong, Eric J Hume, Benjamin C C Aury, Jean-Marc Pogoreutz, Claudia Paz-Garcia, David A Nugues, Maggy M Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, Michel Forcioli, Didier Furla, Paola Gilson, Eric Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Thomas, Olivier P Trouble, Romain Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Thurber, Rebecca Vega Voolstra, Christian R Sunagawa, Shinichi Galand, Pierre E eng England 2023/06/02 Nat Commun. 2023 Jun 1;14(1):3037. doi: 10.1038/s41467-023-38502-9.\n\n\n\n
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@article{RN355,\r\n   author = {Hochart, C. and Paoli, L. and Ruscheweyh, H. J. and Salazar, G. and Boissin, E. and Romac, S. and Poulain, J. and Bourdin, G. and Iwankow, G. and Moulin, C. and Ziegler, M. and Porro, B. and Armstrong, E. J. and Hume, B. C. C. and Aury, J. M. and Pogoreutz, C. and Paz-Garcia, D. A. and Nugues, M. M. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Flores, M. and Forcioli, D. and Furla, P. and Gilson, E. and Lombard, F. and Pesant, S. and Reynaud, S. and Thomas, O. P. and Trouble, R. and Wincker, P. and Zoccola, D. and Allemand, D. and Planes, S. and Thurber, R. V. and Voolstra, C. R. and Sunagawa, S. and Galand, P. E.},\r\n   title = {Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean},\r\n   journal = {Nat Commun},\r\n   volume = {14},\r\n   number = {1},\r\n   pages = {3037},\r\n   note = {Hochart, Corentin\r\nPaoli, Lucas\r\nRuscheweyh, Hans-Joachim\r\nSalazar, Guillem\r\nBoissin, Emilie\r\nRomac, Sarah\r\nPoulain, Julie\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nMoulin, Clementine\r\nZiegler, Maren\r\nPorro, Barbara\r\nArmstrong, Eric J\r\nHume, Benjamin C C\r\nAury, Jean-Marc\r\nPogoreutz, Claudia\r\nPaz-Garcia, David A\r\nNugues, Maggy M\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nFlores, Michel\r\nForcioli, Didier\r\nFurla, Paola\r\nGilson, Eric\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nThomas, Olivier P\r\nTrouble, Romain\r\nWincker, Patrick\r\nZoccola, Didier\r\nAllemand, Denis\r\nPlanes, Serge\r\nThurber, Rebecca Vega\r\nVoolstra, Christian R\r\nSunagawa, Shinichi\r\nGaland, Pierre E\r\neng\r\nEngland\r\n2023/06/02\r\nNat Commun. 2023 Jun 1;14(1):3037. doi: 10.1038/s41467-023-38502-9.},\r\n   abstract = {Health and resilience of the coral holobiont depend on diverse bacterial communities often dominated by key marine symbionts of the Endozoicomonadaceae family. The factors controlling their distribution and their functional diversity remain, however, poorly known. Here, we study the ecology of Endozoicomonadaceae at an ocean basin-scale by sampling specimens from three coral genera (Pocillopora, Porites, Millepora) on 99 reefs from 32 islands across the Pacific Ocean. The analysis of 2447 metabarcoding and 270 metagenomic samples reveals that each coral genus harbored a distinct new species of Endozoicomonadaceae. These species are composed of nine lineages that have distinct biogeographic patterns. The most common one, found in Pocillopora, appears to be a globally distributed symbiont with distinct metabolic capabilities, including the synthesis of amino acids and vitamins not produced by the host. The other lineages are structured partly by the host genetic lineage in Pocillopora and mainly by the geographic location in Porites. Millepora is more rarely associated to Endozoicomonadaceae. Our results show that different coral genera exhibit distinct strategies of host-Endozoicomonadaceae associations that are defined at the bacteria lineage level.},\r\n   keywords = {Animals\r\n*Anthozoa/microbiology\r\nPacific Ocean\r\nEcology\r\n*Gammaproteobacteria\r\nBacteria\r\nCoral Reefs},\r\n   ISSN = {2041-1723 (Electronic)\r\n2041-1723 (Linking)},\r\n   DOI = {10.1038/s41467-023-38502-9},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264015},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Health and resilience of the coral holobiont depend on diverse bacterial communities often dominated by key marine symbionts of the Endozoicomonadaceae family. The factors controlling their distribution and their functional diversity remain, however, poorly known. Here, we study the ecology of Endozoicomonadaceae at an ocean basin-scale by sampling specimens from three coral genera (Pocillopora, Porites, Millepora) on 99 reefs from 32 islands across the Pacific Ocean. The analysis of 2447 metabarcoding and 270 metagenomic samples reveals that each coral genus harbored a distinct new species of Endozoicomonadaceae. These species are composed of nine lineages that have distinct biogeographic patterns. The most common one, found in Pocillopora, appears to be a globally distributed symbiont with distinct metabolic capabilities, including the synthesis of amino acids and vitamins not produced by the host. The other lineages are structured partly by the host genetic lineage in Pocillopora and mainly by the geographic location in Porites. Millepora is more rarely associated to Endozoicomonadaceae. Our results show that different coral genera exhibit distinct strategies of host-Endozoicomonadaceae associations that are defined at the bacteria lineage level.\n
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\n \n\n \n \n \n \n \n \n Diversity of the Pacific Ocean coral reef microbiome.\n \n \n \n \n\n\n \n Galand, P. E., Ruscheweyh, H. J., Salazar, G., Hochart, C., Henry, N., Hume, B. C. C., Oliveira, P. H., Perdereau, A., Labadie, K., Belser, C., Boissin, E., Romac, S., Poulain, J., Bourdin, G., Iwankow, G., Moulin, C., Armstrong, E. J., Paz-Garcia, D. A., Ziegler, M., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Flores, M., Forcioli, D., Furla, P., Gilson, E., Lombard, F., Pesant, S., Reynaud, S., Thomas, O. P., Trouble, R., Zoccola, D., Voolstra, C. R., Thurber, R. V., Sunagawa, S., Wincker, P., Allemand, D., & Planes, S.\n\n\n \n\n\n\n Nat Commun, 14(1): 3039. 2023.\n Galand, Pierre E Ruscheweyh, Hans-Joachim Salazar, Guillem Hochart, Corentin Henry, Nicolas Hume, Benjamin C C Oliveira, Pedro H Perdereau, Aude Labadie, Karine Belser, Caroline Boissin, Emilie Romac, Sarah Poulain, Julie Bourdin, Guillaume Iwankow, Guillaume Moulin, Clementine Armstrong, Eric J Paz-Garcia, David A Ziegler, Maren Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, Michel Forcioli, Didier Furla, Paola Gilson, Eric Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Thomas, Olivier P Trouble, Romain Zoccola, Didier Voolstra, Christian R Thurber, Rebecca Vega Sunagawa, Shinichi Wincker, Patrick Allemand, Denis Planes, Serge eng England 2023/06/02 Nat Commun. 2023 Jun 1;14(1):3039. doi: 10.1038/s41467-023-38500-x.\n\n\n\n
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@article{RN354,\r\n   author = {Galand, P. E. and Ruscheweyh, H. J. and Salazar, G. and Hochart, C. and Henry, N. and Hume, B. C. C. and Oliveira, P. H. and Perdereau, A. and Labadie, K. and Belser, C. and Boissin, E. and Romac, S. and Poulain, J. and Bourdin, G. and Iwankow, G. and Moulin, C. and Armstrong, E. J. and Paz-Garcia, D. A. and Ziegler, M. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Flores, M. and Forcioli, D. and Furla, P. and Gilson, E. and Lombard, F. and Pesant, S. and Reynaud, S. and Thomas, O. P. and Trouble, R. and Zoccola, D. and Voolstra, C. R. and Thurber, R. V. and Sunagawa, S. and Wincker, P. and Allemand, D. and Planes, S.},\r\n   title = {Diversity of the Pacific Ocean coral reef microbiome},\r\n   journal = {Nat Commun},\r\n   volume = {14},\r\n   number = {1},\r\n   pages = {3039},\r\n   note = {Galand, Pierre E\r\nRuscheweyh, Hans-Joachim\r\nSalazar, Guillem\r\nHochart, Corentin\r\nHenry, Nicolas\r\nHume, Benjamin C C\r\nOliveira, Pedro H\r\nPerdereau, Aude\r\nLabadie, Karine\r\nBelser, Caroline\r\nBoissin, Emilie\r\nRomac, Sarah\r\nPoulain, Julie\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nMoulin, Clementine\r\nArmstrong, Eric J\r\nPaz-Garcia, David A\r\nZiegler, Maren\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nFlores, Michel\r\nForcioli, Didier\r\nFurla, Paola\r\nGilson, Eric\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nThomas, Olivier P\r\nTrouble, Romain\r\nZoccola, Didier\r\nVoolstra, Christian R\r\nThurber, Rebecca Vega\r\nSunagawa, Shinichi\r\nWincker, Patrick\r\nAllemand, Denis\r\nPlanes, Serge\r\neng\r\nEngland\r\n2023/06/02\r\nNat Commun. 2023 Jun 1;14(1):3039. doi: 10.1038/s41467-023-38500-x.},\r\n   abstract = {Coral reefs are among the most diverse ecosystems on Earth. They support high biodiversity of multicellular organisms that strongly rely on associated microorganisms for health and nutrition. However, the extent of the coral reef microbiome diversity and its distribution at the oceanic basin-scale remains to be explored. Here, we systematically sampled 3 coral morphotypes, 2 fish species, and planktonic communities in 99 reefs from 32 islands across the Pacific Ocean, to assess reef microbiome composition and biogeography. We show a very large richness of reef microorganisms compared to other environments, which extrapolated to all fishes and corals of the Pacific, approximates the current estimated total prokaryotic diversity for the entire Earth. Microbial communities vary among and within the 3 animal biomes (coral, fish, plankton), and geographically. For corals, the cross-ocean patterns of diversity are different from those known for other multicellular organisms. Within each coral morphotype, community composition is always determined by geographic distance first, both at the island and across ocean scale, and then by environment. Our unprecedented sampling effort of coral reef microbiomes, as part of the Tara Pacific expedition, provides new insight into the global microbial diversity, the factors driving their distribution, and the biocomplexity of reef ecosystems.},\r\n   keywords = {Animals\r\nCoral Reefs\r\nPacific Ocean\r\n*Anthozoa\r\nBiodiversity\r\n*Microbiota\r\nFishes\r\nPlankton},\r\n   ISSN = {2041-1723 (Electronic)\r\n2041-1723 (Linking)},\r\n   DOI = {10.1038/s41467-023-38500-x},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264002},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Coral reefs are among the most diverse ecosystems on Earth. They support high biodiversity of multicellular organisms that strongly rely on associated microorganisms for health and nutrition. However, the extent of the coral reef microbiome diversity and its distribution at the oceanic basin-scale remains to be explored. Here, we systematically sampled 3 coral morphotypes, 2 fish species, and planktonic communities in 99 reefs from 32 islands across the Pacific Ocean, to assess reef microbiome composition and biogeography. We show a very large richness of reef microorganisms compared to other environments, which extrapolated to all fishes and corals of the Pacific, approximates the current estimated total prokaryotic diversity for the entire Earth. Microbial communities vary among and within the 3 animal biomes (coral, fish, plankton), and geographically. For corals, the cross-ocean patterns of diversity are different from those known for other multicellular organisms. Within each coral morphotype, community composition is always determined by geographic distance first, both at the island and across ocean scale, and then by environment. Our unprecedented sampling effort of coral reef microbiomes, as part of the Tara Pacific expedition, provides new insight into the global microbial diversity, the factors driving their distribution, and the biocomplexity of reef ecosystems.\n
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\n \n\n \n \n \n \n \n \n Pervasive tandem duplications and convergent evolution shape coral genomes.\n \n \n \n \n\n\n \n Noel, B., Denoeud, F., Rouan, A., Buitrago-Lopez, C., Capasso, L., Poulain, J., Boissin, E., Pousse, M., Da Silva, C., Couloux, A., Armstrong, E., Carradec, Q., Cruaud, C., Labadie, K., Le-Hoang, J., Tambutte, S., Barbe, V., Moulin, C., Bourdin, G., Iwankow, G., Romac, S., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Flores, J. M., Forcioli, D., Furla, P., Galand, P. E., Lombard, F., Pesant, S., Reynaud, S., Sullivan, M. B., Sunagawa, S., Thomas, O. P., Trouble, R., Thurber, R. V., Allemand, D., Planes, S., Gilson, E., Zoccola, D., Wincker, P., Voolstra, C. R., & Aury, J. M.\n\n\n \n\n\n\n Genome Biol, 24(1): 123. 2023.\n Noel, Benjamin Denoeud, France Rouan, Alice Buitrago-Lopez, Carol Capasso, Laura Poulain, Julie Boissin, Emilie Pousse, Melanie Da Silva, Corinne Couloux, Arnaud Armstrong, Eric Carradec, Quentin Cruaud, Corinne Labadie, Karine Le-Hoang, Julie Tambutte, Sylvie Barbe, Valerie Moulin, Clementine Bourdin, Guillaume Iwankow, Guillaume Romac, Sarah Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Flores, J Michel Forcioli, Didier Furla, Paola Galand, Pierre E Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Sullivan, Matthew B Sunagawa, Shinichi Thomas, Olivier P Trouble, Romain Thurber, Rebecca Vega Allemand, Denis Planes, Serge Gilson, Eric Zoccola, Didier Wincker, Patrick Voolstra, Christian R Aury, Jean-Marc eng ANR-10-INBS-09-08/Agence Nationale de la Recherche/ England 2023/06/02 Genome Biol. 2023 Jun 1;24(1):123. doi: 10.1186/s13059-023-02960-7.\n\n\n\n
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@article{RN353,\r\n   author = {Noel, B. and Denoeud, F. and Rouan, A. and Buitrago-Lopez, C. and Capasso, L. and Poulain, J. and Boissin, E. and Pousse, M. and Da Silva, C. and Couloux, A. and Armstrong, E. and Carradec, Q. and Cruaud, C. and Labadie, K. and Le-Hoang, J. and Tambutte, S. and Barbe, V. and Moulin, C. and Bourdin, G. and Iwankow, G. and Romac, S. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Flores, J. M. and Forcioli, D. and Furla, P. and Galand, P. E. and Lombard, F. and Pesant, S. and Reynaud, S. and Sullivan, M. B. and Sunagawa, S. and Thomas, O. P. and Trouble, R. and Thurber, R. V. and Allemand, D. and Planes, S. and Gilson, E. and Zoccola, D. and Wincker, P. and Voolstra, C. R. and Aury, J. M.},\r\n   title = {Pervasive tandem duplications and convergent evolution shape coral genomes},\r\n   journal = {Genome Biol},\r\n   volume = {24},\r\n   number = {1},\r\n   pages = {123},\r\n   note = {Noel, Benjamin\r\nDenoeud, France\r\nRouan, Alice\r\nBuitrago-Lopez, Carol\r\nCapasso, Laura\r\nPoulain, Julie\r\nBoissin, Emilie\r\nPousse, Melanie\r\nDa Silva, Corinne\r\nCouloux, Arnaud\r\nArmstrong, Eric\r\nCarradec, Quentin\r\nCruaud, Corinne\r\nLabadie, Karine\r\nLe-Hoang, Julie\r\nTambutte, Sylvie\r\nBarbe, Valerie\r\nMoulin, Clementine\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nRomac, Sarah\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nFlores, J Michel\r\nForcioli, Didier\r\nFurla, Paola\r\nGaland, Pierre E\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nSullivan, Matthew B\r\nSunagawa, Shinichi\r\nThomas, Olivier P\r\nTrouble, Romain\r\nThurber, Rebecca Vega\r\nAllemand, Denis\r\nPlanes, Serge\r\nGilson, Eric\r\nZoccola, Didier\r\nWincker, Patrick\r\nVoolstra, Christian R\r\nAury, Jean-Marc\r\neng\r\nANR-10-INBS-09-08/Agence Nationale de la Recherche/\r\nEngland\r\n2023/06/02\r\nGenome Biol. 2023 Jun 1;24(1):123. doi: 10.1186/s13059-023-02960-7.},\r\n   abstract = {BACKGROUND: Over the last decade, several coral genomes have been sequenced allowing a better understanding of these symbiotic organisms threatened by climate change. Scleractinian corals are reef builders and are central to coral reef ecosystems, providing habitat to a great diversity of species. RESULTS: In the frame of the Tara Pacific expedition, we assemble two coral genomes, Porites lobata and Pocillopora cf. effusa, with vastly improved contiguity that allows us to study the functional organization of these genomes. We annotate their gene catalog and report a relatively higher gene number than that found in other public coral genome sequences, 43,000 and 32,000 genes, respectively. This finding is explained by a high number of tandemly duplicated genes, accounting for almost a third of the predicted genes. We show that these duplicated genes originate from multiple and distinct duplication events throughout the coral lineage. They contribute to the amplification of gene families, mostly related to the immune system and disease resistance, which we suggest to be functionally linked to coral host resilience. CONCLUSIONS: At large, we show the importance of duplicated genes to inform the biology of reef-building corals and provide novel avenues to understand and screen for differences in stress resilience.},\r\n   keywords = {Animals\r\n*Anthozoa/genetics\r\nEcosystem\r\nCoral Reefs},\r\n   ISSN = {1474-760X (Electronic)\r\n1474-7596 (Print)\r\n1474-7596 (Linking)},\r\n   DOI = {10.1186/s13059-023-02960-7},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264421},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n BACKGROUND: Over the last decade, several coral genomes have been sequenced allowing a better understanding of these symbiotic organisms threatened by climate change. Scleractinian corals are reef builders and are central to coral reef ecosystems, providing habitat to a great diversity of species. RESULTS: In the frame of the Tara Pacific expedition, we assemble two coral genomes, Porites lobata and Pocillopora cf. effusa, with vastly improved contiguity that allows us to study the functional organization of these genomes. We annotate their gene catalog and report a relatively higher gene number than that found in other public coral genome sequences, 43,000 and 32,000 genes, respectively. This finding is explained by a high number of tandemly duplicated genes, accounting for almost a third of the predicted genes. We show that these duplicated genes originate from multiple and distinct duplication events throughout the coral lineage. They contribute to the amplification of gene families, mostly related to the immune system and disease resistance, which we suggest to be functionally linked to coral host resilience. CONCLUSIONS: At large, we show the importance of duplicated genes to inform the biology of reef-building corals and provide novel avenues to understand and screen for differences in stress resilience.\n
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\n \n\n \n \n \n \n \n \n Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition.\n \n \n \n \n\n\n \n Belser, C., Poulain, J., Labadie, K., Gavory, F., Alberti, A., Guy, J., Carradec, Q., Cruaud, C., Da Silva, C., Engelen, S., Mielle, P., Perdereau, A., Samson, G., Gas, S., Genoscope Technical, T., Voolstra, C. R., Galand, P. E., Flores, J. M., Hume, B. C. C., Perna, G., Ziegler, M., Ruscheweyh, H. J., Boissin, E., Romac, S., Bourdin, G., Iwankow, G., Moulin, C., Paz Garcia, D. A., Agostini, S., Banaigs, B., Boss, E., Bowler, C., de Vargas, C., Douville, E., Forcioli, D., Furla, P., Gilson, E., Lombard, F., Pesant, S., Reynaud, S., Sunagawa, S., Thomas, O. P., Trouble, R., Thurber, R. V., Zoccola, D., Scarpelli, C., Jacoby, E. K., Oliveira, P. H., Aury, J. M., Allemand, D., Planes, S., & Wincker, P.\n\n\n \n\n\n\n Sci Data, 10(1): 326. 2023.\n Belser, Caroline Poulain, Julie Labadie, Karine Gavory, Frederick Alberti, Adriana Guy, Julie Carradec, Quentin Cruaud, Corinne Da Silva, Corinne Engelen, Stefan Mielle, Paul Perdereau, Aude Samson, Gaelle Gas, Shahinaz Voolstra, Christian R Galand, Pierre E Flores, J Michel Hume, Benjamin C C Perna, Gabriela Ziegler, Maren Ruscheweyh, Hans-Joachim Boissin, Emilie Romac, Sarah Bourdin, Guillaume Iwankow, Guillaume Moulin, Clementine Paz Garcia, David A Agostini, Sylvain Banaigs, Bernard Boss, Emmanuel Bowler, Chris de Vargas, Colomban Douville, Eric Forcioli, Didier Furla, Paola Gilson, Eric Lombard, Fabien Pesant, Stephane Reynaud, Stephanie Sunagawa, Shinichi Thomas, Olivier P Trouble, Romain Thurber, Rebecca Vega Zoccola, Didier Scarpelli, Claude Jacoby, E' Krame Oliveira, Pedro H Aury, Jean-Marc Allemand, Denis Planes, Serge Wincker, Patrick eng England 2023/06/02 Sci Data. 2023 Jun 1;10(1):326. doi: 10.1038/s41597-023-02204-0.\n\n\n\n
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@article{RN352,\r\n   author = {Belser, C. and Poulain, J. and Labadie, K. and Gavory, F. and Alberti, A. and Guy, J. and Carradec, Q. and Cruaud, C. and Da Silva, C. and Engelen, S. and Mielle, P. and Perdereau, A. and Samson, G. and Gas, S. and Genoscope Technical, Team and Voolstra, C. R. and Galand, P. E. and Flores, J. M. and Hume, B. C. C. and Perna, G. and Ziegler, M. and Ruscheweyh, H. J. and Boissin, E. and Romac, S. and Bourdin, G. and Iwankow, G. and Moulin, C. and Paz Garcia, D. A. and Agostini, S. and Banaigs, B. and Boss, E. and Bowler, C. and de Vargas, C. and Douville, E. and Forcioli, D. and Furla, P. and Gilson, E. and Lombard, F. and Pesant, S. and Reynaud, S. and Sunagawa, S. and Thomas, O. P. and Trouble, R. and Thurber, R. V. and Zoccola, D. and Scarpelli, C. and Jacoby, E. K. and Oliveira, P. H. and Aury, J. M. and Allemand, D. and Planes, S. and Wincker, P.},\r\n   title = {Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition},\r\n   journal = {Sci Data},\r\n   volume = {10},\r\n   number = {1},\r\n   pages = {326},\r\n   note = {Belser, Caroline\r\nPoulain, Julie\r\nLabadie, Karine\r\nGavory, Frederick\r\nAlberti, Adriana\r\nGuy, Julie\r\nCarradec, Quentin\r\nCruaud, Corinne\r\nDa Silva, Corinne\r\nEngelen, Stefan\r\nMielle, Paul\r\nPerdereau, Aude\r\nSamson, Gaelle\r\nGas, Shahinaz\r\nVoolstra, Christian R\r\nGaland, Pierre E\r\nFlores, J Michel\r\nHume, Benjamin C C\r\nPerna, Gabriela\r\nZiegler, Maren\r\nRuscheweyh, Hans-Joachim\r\nBoissin, Emilie\r\nRomac, Sarah\r\nBourdin, Guillaume\r\nIwankow, Guillaume\r\nMoulin, Clementine\r\nPaz Garcia, David A\r\nAgostini, Sylvain\r\nBanaigs, Bernard\r\nBoss, Emmanuel\r\nBowler, Chris\r\nde Vargas, Colomban\r\nDouville, Eric\r\nForcioli, Didier\r\nFurla, Paola\r\nGilson, Eric\r\nLombard, Fabien\r\nPesant, Stephane\r\nReynaud, Stephanie\r\nSunagawa, Shinichi\r\nThomas, Olivier P\r\nTrouble, Romain\r\nThurber, Rebecca Vega\r\nZoccola, Didier\r\nScarpelli, Claude\r\nJacoby, E' Krame\r\nOliveira, Pedro H\r\nAury, Jean-Marc\r\nAllemand, Denis\r\nPlanes, Serge\r\nWincker, Patrick\r\neng\r\nEngland\r\n2023/06/02\r\nSci Data. 2023 Jun 1;10(1):326. doi: 10.1038/s41597-023-02204-0.},\r\n   abstract = {Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.},\r\n   keywords = {Animals\r\nCoral Reefs\r\nEcosystem\r\n*Expeditions\r\n*Anthozoa\r\nBiodiversity},\r\n   ISSN = {2052-4463 (Electronic)\r\n2052-4463 (Linking)},\r\n   DOI = {10.1038/s41597-023-02204-0},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264047},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.\n
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\n \n\n \n \n \n \n \n \n Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems.\n \n \n \n \n\n\n \n Lombard, F., Bourdin, G., Pesant, S., Agostini, S., Baudena, A., Boissin, E., Cassar, N., Clampitt, M., Conan, P., Da Silva, O., Dimier, C., Douville, E., Elineau, A., Fin, J., Flores, J. M., Ghiglione, J., Hume, B. C. C., Jalabert, L., John, S. G., Kelly, R. L., Koren, I., Lin, Y., Marie, D., McMinds, R., Mériguet, Z., Metzl, N., Paz-García, D. A., Pedrotti, M. L., Poulain, J., Pujo-Pay, M., Ras, J., Reverdin, G., Romac, S., Rouan, A., Röttinger, E., Vardi, A., Voolstra, C. R., Moulin, C., Iwankow, G., Banaigs, B., Bowler, C., de Vargas, C., Forcioli, D., Furla, P., Galand, P. E., Gilson, E., Reynaud, S., Sunagawa, S., Sullivan, M. B., Thomas, O. P., Troublé, R., Thurber, R. V., Wincker, P., Zoccola, D., Allemand, D., Planes, S., Boss, E., & Gorsky, G.\n\n\n \n\n\n\n Scientific Data, 10(1): 324. 2023.\n \n\n\n\n
\n\n\n\n \n \n \"OpenPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n  \n \n 2 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN337,\r\n   author = {Lombard, Fabien and Bourdin, Guillaume and Pesant, Stéphane and Agostini, Sylvain and Baudena, Alberto and Boissin, Emilie and Cassar, Nicolas and Clampitt, Megan and Conan, Pascal and Da Silva, Ophélie and Dimier, Céline and Douville, Eric and Elineau, Amanda and Fin, Jonathan and Flores, J. Michel and Ghiglione, Jean-François and Hume, Benjamin C. C. and Jalabert, Laetitia and John, Seth G. and Kelly, Rachel L. and Koren, Ilan and Lin, Yajuan and Marie, Dominique and McMinds, Ryan and Mériguet, Zoé and Metzl, Nicolas and Paz-García, David A. and Pedrotti, Maria Luiza and Poulain, Julie and Pujo-Pay, Mireille and Ras, Joséphine and Reverdin, Gilles and Romac, Sarah and Rouan, Alice and Röttinger, Eric and Vardi, Assaf and Voolstra, Christian R. and Moulin, Clémentine and Iwankow, Guillaume and Banaigs, Bernard and Bowler, Chris and de Vargas, Colomban and Forcioli, Didier and Furla, Paola and Galand, Pierre E. and Gilson, Eric and Reynaud, Stéphanie and Sunagawa, Shinichi and Sullivan, Matthew B. and Thomas, Olivier P. and Troublé, Romain and Thurber, Rebecca Vega and Wincker, Patrick and Zoccola, Didier and Allemand, Denis and Planes, Serge and Boss, Emmanuel and Gorsky, Gaby},\r\n   title = {Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems},\r\n   journal = {Scientific Data},\r\n   volume = {10},\r\n   number = {1},\r\n   pages = {324},\r\n   abstract = {The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.},\r\n   ISSN = {2052-4463},\r\n   DOI = {10.1038/s41597-022-01757-w},\r\n   url = {https://doi.org/10.1038/s41597-022-01757-w},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.\n
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\n \n\n \n \n \n \n \n \n Insights and achievements from the Tara Pacific expedition.\n \n \n \n \n\n\n \n Planes, S., & Allemand, D.\n\n\n \n\n\n\n Nat Commun, 14(1): 3131. 2023.\n Planes, Serge Allemand, Denis eng England 2023/06/02 Nat Commun. 2023 Jun 1;14(1):3131. doi: 10.1038/s41467-023-38896-6.\n\n\n\n
\n\n\n\n \n \n \"InsightsPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n  \n \n 6 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN359,\r\n   author = {Planes, S. and Allemand, D.},\r\n   title = {Insights and achievements from the Tara Pacific expedition},\r\n   journal = {Nat Commun},\r\n   volume = {14},\r\n   number = {1},\r\n   pages = {3131},\r\n   note = {Planes, Serge\r\nAllemand, Denis\r\neng\r\nEngland\r\n2023/06/02\r\nNat Commun. 2023 Jun 1;14(1):3131. doi: 10.1038/s41467-023-38896-6.},\r\n   abstract = {The Tara Pacific program and expedition focused on coral reefs across the Pacific Ocean and used a coordinated sampling effort to address questions at multiple scales using a common suite of samples. Here, we highlight some of the Tara Pacific achievements, discussing the benefits of long-duration sea expeditions for investigating a wide array of research questions within a selected ecosystem.},\r\n   ISSN = {2041-1723 (Electronic)\r\n2041-1723 (Linking)},\r\n   DOI = {10.1038/s41467-023-38896-6},\r\n   url = {https://www.ncbi.nlm.nih.gov/pubmed/37264031},\r\n   year = {2023},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n The Tara Pacific program and expedition focused on coral reefs across the Pacific Ocean and used a coordinated sampling effort to address questions at multiple scales using a common suite of samples. Here, we highlight some of the Tara Pacific achievements, discussing the benefits of long-duration sea expeditions for investigating a wide array of research questions within a selected ecosystem.\n
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\n  \n 2022\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n \n Antifungal mono- and dimeric nitrogenous bisabolene derivatives from a sponge in the order Bubarida from Futuna Islands.\n \n \n \n \n\n\n \n Miguel-Gordo, M., Reddy, M. M., Sánchez, P., Buckley, J. J., Mackenzie, T. A., Jennings, L. K., Reyes, F., Calabro, K., & Thomas, O. P.\n\n\n \n\n\n\n Organic and Biomolecular Chemistry, 20(5): 1031-1040. 2022.\n \n\n\n\n
\n\n\n\n \n \n \"AntifungalPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 3 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN320,\r\n   author = {Miguel-Gordo, Maria and Reddy, Maggie M. and Sánchez, Pilar and Buckley, Jordan J. and Mackenzie, Thomas A. and Jennings, Laurence K. and Reyes, Fernando and Calabro, Kevin and Thomas, Olivier P.},\r\n   title = {Antifungal mono- and dimeric nitrogenous bisabolene derivatives from a sponge in the order Bubarida from Futuna Islands},\r\n   journal = {Organic and Biomolecular Chemistry},\r\n   volume = {20},\r\n   number = {5},\r\n   pages = {1031-1040},\r\n   DOI = {10.1039/d1ob02297k},\r\n   url = {http://dx.doi.org/10.1039/D1OB02297K},\r\n   year = {2022},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans.\n \n \n \n \n\n\n \n Lang-Yona, N., Flores, J. M., Haviv, R., Alberti, A., Poulain, J., Belser, C., Trainic, M., Gat, D., Ruscheweyh, H., Wincker, P., Sunagawa, S., Rudich, Y., Koren, I., & Vardi, A.\n\n\n \n\n\n\n Communications Earth & Environment, 3(1). 2022.\n \n\n\n\n
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@article{RN323,\r\n   author = {Lang-Yona, Naama and Flores, J. Michel and Haviv, Rotem and Alberti, Adriana and Poulain, Julie and Belser, Caroline and Trainic, Miri and Gat, Daniella and Ruscheweyh, Hans-Joachim and Wincker, Patrick and Sunagawa, Shinichi and Rudich, Yinon and Koren, Ilan and Vardi, Assaf},\r\n   title = {Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans},\r\n   journal = {Communications Earth &amp; Environment},\r\n   volume = {3},\r\n   number = {1},\r\n   ISSN = {2662-4435},\r\n   DOI = {10.1038/s43247-022-00441-6},\r\n   url = {http://dx.doi.org/10.1038/s43247-022-00441-6},\r\n   year = {2022},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n  \n 2021\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n \n Diel cycle of sea spray aerosol concentration.\n \n \n \n \n\n\n \n Flores, J. M., Bourdin, G., Kostinski, A. B., Altaratz, O., Dagan, G., Lombard, F., Haëntjens, N., Boss, E., Sullivan, M. B., Gorsky, G., Lang-Yona, N., Trainic, M., Romac, S., Voolstra, C. R., Rudich, Y., Vardi, A., & Koren, I.\n\n\n \n\n\n\n Nature Communications, 12(1). 2021.\n \n\n\n\n
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@article{RN325,\r\n   author = {Flores, J. Michel and Bourdin, Guillaume and Kostinski, Alexander B. and Altaratz, Orit and Dagan, Guy and Lombard, Fabien and Haëntjens, Nils and Boss, Emmanuel and Sullivan, Matthew B. and Gorsky, Gabriel and Lang-Yona, Naama and Trainic, Miri and Romac, Sarah and Voolstra, Christian R. and Rudich, Yinon and Vardi, Assaf and Koren, Ilan},\r\n   title = {Diel cycle of sea spray aerosol concentration},\r\n   journal = {Nature Communications},\r\n   volume = {12},\r\n   number = {1},\r\n   ISSN = {2041-1723},\r\n   DOI = {10.1038/s41467-021-25579-3},\r\n   url = {http://dx.doi.org/10.1038/s41467-021-25579-3},\r\n   year = {2021},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n  \n 2020\n \n \n (7)\n \n \n
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\n \n\n \n \n \n \n \n \n Futunamine, a Pyrrole–Imidazole Alkaloid from the Sponge Stylissa aff. carteri Collected off the Futuna Islands.\n \n \n \n \n\n\n \n Miguel-Gordo, M., Gegunde, S., Jennings, L. K., Genta-Jouve, G., Calabro, K., Alfonso, A., Botana, L. M., & Thomas, O. P.\n\n\n \n\n\n\n Journal of Natural Products, 83(7): 2299-2304. 2020.\n \n\n\n\n
\n\n\n\n \n \n \"Futunamine,Paper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 1 download\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN321,\r\n   author = {Miguel-Gordo, Maria and Gegunde, Sandra and Jennings, Laurence K. and Genta-Jouve, Grégory and Calabro, Kevin and Alfonso, Amparo and Botana, Luis M. and Thomas, Olivier P.},\r\n   title = {Futunamine, a Pyrrole–Imidazole Alkaloid from the Sponge <i>Stylissa</i> aff. <i>carteri</i> Collected off the Futuna Islands},\r\n   journal = {Journal of Natural Products},\r\n   volume = {83},\r\n   number = {7},\r\n   pages = {2299-2304},\r\n   DOI = {10.1021/acs.jnatprod.0c00223},\r\n   url = {http://dx.doi.org/10.1021/acs.jnatprod.0c00223},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Serotonin and dopamine derivatives from the Papua New Guinea zoantharian Zoanthus cf. sansibaricus.\n \n \n \n \n\n\n \n Guillen, P. O., O’Brien, S., Keekan, K. K., Jaramillo, K. B., & Thomas, O. P.\n\n\n \n\n\n\n Phytochemistry Letters, 40: 1-4. 2020.\n \n\n\n\n
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@article{RN322,\r\n   author = {Guillen, Paul O. and O’Brien, Shauna and Keekan, Kishor K. and Jaramillo, Karla B. and Thomas, Olivier P.},\r\n   title = {Serotonin and dopamine derivatives from the Papua New Guinea zoantharian Zoanthus cf. sansibaricus},\r\n   journal = {Phytochemistry Letters},\r\n   volume = {40},\r\n   pages = {1-4},\r\n   ISSN = {1874-3900},\r\n   DOI = {10.1016/j.phytol.2020.09.001},\r\n   url = {http://dx.doi.org/10.1016/j.phytol.2020.09.001},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Sensitivity of warm clouds to large particles in measured marine aerosol size distributions – a theoretical study.\n \n \n \n \n\n\n \n Dror, T., Flores, J. M., Altaratz, O., Dagan, G., Levin, Z., Vardi, A., & Koren, I.\n\n\n \n\n\n\n Atmospheric Chemistry and Physics, 20(23): 15297-15306. 2020.\n \n\n\n\n
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@article{RN324,\r\n   author = {Dror, Tom and Flores, J. Michel and Altaratz, Orit and Dagan, Guy and Levin, Zev and Vardi, Assaf and Koren, Ilan},\r\n   title = {Sensitivity of warm clouds to large particles in measured marine aerosol size distributions – a theoretical study},\r\n   journal = {Atmospheric Chemistry and Physics},\r\n   volume = {20},\r\n   number = {23},\r\n   pages = {15297-15306},\r\n   ISSN = {1680-7324},\r\n   DOI = {10.5194/acp-20-15297-2020},\r\n   url = {http://dx.doi.org/10.5194/acp-20-15297-2020},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Airborne microplastic particles detected in the remote marine atmosphere.\n \n \n \n \n\n\n \n Trainic, M., Flores, J. M., Pinkas, I., Pedrotti, M. L., Lombard, F., Bourdin, G., Gorsky, G., Boss, E., Rudich, Y., Vardi, A., & Koren, I.\n\n\n \n\n\n\n Communications Earth & Environment, 1(1). 2020.\n \n\n\n\n
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@article{RN326,\r\n   author = {Trainic, Miri and Flores, J. Michel and Pinkas, Iddo and Pedrotti, Maria Luiza and Lombard, Fabien and Bourdin, Guillaume and Gorsky, Gabriel and Boss, Emmanuel and Rudich, Yinon and Vardi, Assaf and Koren, Ilan},\r\n   title = {Airborne microplastic particles detected in the remote marine atmosphere},\r\n   journal = {Communications Earth &amp; Environment},\r\n   volume = {1},\r\n   number = {1},\r\n   ISSN = {2662-4435},\r\n   DOI = {10.1038/s43247-020-00061-y},\r\n   url = {http://dx.doi.org/10.1038/s43247-020-00061-y},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results.\n \n \n \n \n\n\n \n Flores, J. M., Bourdin, G., Altaratz, O., Trainic, M., Lang-Yona, N., Dzimban, E., Steinau, S., Tettich, F., Planes, S., Allemand, D., Agostini, S., Banaigs, B., Boissin, E., Boss, E., Douville, E., Forcioli, D., Furla, P., Galand, P. E., Sullivan, M. B., Gilson, É, Lombard, F., Moulin, C., Pesant, S., Poulain, J., Reynaud, S., Romac, S., Sunagawa, S., Thomas, O. P., Troublé, R., de Vargas, C., Thurber, R. V., Voolstra, C. R., Wincker, P., Zoccola, D., Bowler, C., Gorsky, G., Rudich, Y., Vardi, A., & Koren, I.\n\n\n \n\n\n\n Bulletin of the American Meteorological Society, 101(5): E536-E554. 2020.\n \n\n\n\n
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@article{RN329,\r\n   author = {Flores, J. M. and Bourdin, G. and Altaratz, O. and Trainic, M. and Lang-Yona, N. and Dzimban, E. and Steinau, S. and Tettich, F. and Planes, S. and Allemand, D. and Agostini, S. and Banaigs, B. and Boissin, E. and Boss, E. and Douville, E. and Forcioli, D. and Furla, P. and Galand, P. E. and Sullivan, M. B. and Gilson, É and Lombard, F. and Moulin, C. and Pesant, S. and Poulain, J. and Reynaud, S. and Romac, S. and Sunagawa, S. and Thomas, O. P. and Troublé, R. and de Vargas, C. and Thurber, R. Vega and Voolstra, C. R. and Wincker, P. and Zoccola, D. and Bowler, C. and Gorsky, G. and Rudich, Y. and Vardi, A. and Koren, I.},\r\n   title = {Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results},\r\n   journal = {Bulletin of the American Meteorological Society},\r\n   volume = {101},\r\n   number = {5},\r\n   pages = {E536-E554},\r\n   ISSN = {0003-0007\r\n1520-0477},\r\n   DOI = {10.1175/bams-d-18-0224.1},\r\n   url = {http://dx.doi.org/10.1175/BAMS-D-18-0224.1},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Contrasting patterns of mortality in Polynesian coral reefs following the third global coral bleaching event in 2016.\n \n \n \n \n\n\n \n Hédouin, L., Rouzé, H., Berthe, C., Perez-Rosales, G., Martinez, E., Chancerelle, Y., Galand, P. E., Lerouvreur, F., Nugues, M. M., Pochon, X., Siu, G., Steneck, R., & Planes, S.\n\n\n \n\n\n\n Coral Reefs, 39(4): 939-952. 2020.\n \n\n\n\n
\n\n\n\n \n \n \"ContrastingPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 1 download\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN330,\r\n   author = {Hédouin, Laetitia and Rouzé, Héloïse and Berthe, Cécile and Perez-Rosales, Gonzalo and Martinez, Elodie and Chancerelle, Yannick and Galand, Pierre E. and Lerouvreur, Franck and Nugues, Maggy M. and Pochon, Xavier and Siu, Gilles and Steneck, Robert and Planes, Serge},\r\n   title = {Contrasting patterns of mortality in Polynesian coral reefs following the third global coral bleaching event in 2016},\r\n   journal = {Coral Reefs},\r\n   volume = {39},\r\n   number = {4},\r\n   pages = {939-952},\r\n   ISSN = {0722-4028\r\n1432-0975},\r\n   DOI = {10.1007/s00338-020-01914-w},\r\n   url = {http://dx.doi.org/10.1007/s00338-020-01914-w},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n A framework for in situ molecular characterization of coral holobionts using nanopore sequencing.\n \n \n \n \n\n\n \n Carradec, Q., Poulain, J., Boissin, E., Hume, B. C. C., Voolstra, C. R., Ziegler, M., Engelen, S., Cruaud, C., Planes, S., & Wincker, P.\n\n\n \n\n\n\n Scientific Reports, 10(1). 2020.\n \n\n\n\n
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@article{RN332,\r\n   author = {Carradec, Quentin and Poulain, Julie and Boissin, Emilie and Hume, Benjamin C. C. and Voolstra, Christian R. and Ziegler, Maren and Engelen, Stefan and Cruaud, Corinne and Planes, Serge and Wincker, Patrick},\r\n   title = {A framework for in situ molecular characterization of coral holobionts using nanopore sequencing},\r\n   journal = {Scientific Reports},\r\n   volume = {10},\r\n   number = {1},\r\n   ISSN = {2045-2322},\r\n   DOI = {10.1038/s41598-020-72589-0},\r\n   url = {http://dx.doi.org/10.1038/s41598-020-72589-0},\r\n   year = {2020},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n  \n 2019\n \n \n (5)\n \n \n
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\n \n\n \n \n \n \n \n \n Bromotryptamine and Bromotyramine Derivatives from the Tropical Southwestern Pacific Sponge Narrabeena nigra.\n \n \n \n \n\n\n \n Miguel-Gordo, M., Gegunde, S., Calabro, K., Jennings, L. K., Alfonso, A., Genta-Jouve, G., Vacelet, J., Botana, L. M., & Thomas, O. P.\n\n\n \n\n\n\n Marine Drugs, 17(6): 319. 2019.\n \n\n\n\n
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@article{RN327,\r\n   author = {Miguel-Gordo, Maria and Gegunde, Sandra and Calabro, Kevin and Jennings, Laurence K. and Alfonso, Amparo and Genta-Jouve, Grégory and Vacelet, Jean and Botana, Luis M. and Thomas, Olivier P.},\r\n   title = {Bromotryptamine and Bromotyramine Derivatives from the Tropical Southwestern Pacific Sponge Narrabeena nigra},\r\n   journal = {Marine Drugs},\r\n   volume = {17},\r\n   number = {6},\r\n   pages = {319},\r\n   ISSN = {1660-3397},\r\n   DOI = {10.3390/md17060319},\r\n   url = {http://dx.doi.org/10.3390/md17060319},\r\n   year = {2019},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Coral Li/Mg thermometry: Caveats and constraints.\n \n \n \n \n\n\n \n Cuny-Guirriec, K., Douville, E., Reynaud, S., Allemand, D., Bordier, L., Canesi, M., Mazzoli, C., Taviani, M., Canese, S., McCulloch, M., Trotter, J., Rico-Esenaro, S. D., Sanchez-Cabeza, J., Ruiz-Fernández, A. C., Carricart-Ganivet, J. P., Scott, P. M., Sadekov, A., & Montagna, P.\n\n\n \n\n\n\n Chemical Geology, 523: 162-178. 2019.\n \n\n\n\n
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@article{RN328,\r\n   author = {Cuny-Guirriec, Kristan and Douville, Eric and Reynaud, Stéphanie and Allemand, Denis and Bordier, Louise and Canesi, Marine and Mazzoli, Claudio and Taviani, Marco and Canese, Simonepietro and McCulloch, Malcolm and Trotter, Julie and Rico-Esenaro, Serguei Damián and Sanchez-Cabeza, Joan-Albert and Ruiz-Fernández, Ana Carolina and Carricart-Ganivet, Juan P. and Scott, Pete M. and Sadekov, Aleksey and Montagna, Paolo},\r\n   title = {Coral Li/Mg thermometry: Caveats and constraints},\r\n   journal = {Chemical Geology},\r\n   volume = {523},\r\n   pages = {162-178},\r\n   ISSN = {0009-2541},\r\n   DOI = {10.1016/j.chemgeo.2019.03.038},\r\n   url = {http://dx.doi.org/10.1016/j.chemgeo.2019.03.038},\r\n   year = {2019},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Millepora platyphylla (Cnidaria, Hydrozoa) range extended back to the Eastern Pacific, thanks to a new record from Clipperton Atoll.\n \n \n \n \n\n\n \n Boissin, E., Pogoreutz, C., Pey, A., Gravier-Bonnet, N., & Planes, S.\n\n\n \n\n\n\n Zootaxa, 4668(4). 2019.\n \n\n\n\n
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@article{RN331,\r\n   author = {Boissin, E. and Pogoreutz, C. and Pey, A. and Gravier-Bonnet, N. and Planes, S.},\r\n   title = {Millepora platyphylla (Cnidaria, Hydrozoa) range extended back to the Eastern Pacific, thanks to a new record from Clipperton Atoll},\r\n   journal = {Zootaxa},\r\n   volume = {4668},\r\n   number = {4},\r\n   ISSN = {1175-5334\r\n1175-5326},\r\n   DOI = {10.11646/zootaxa.4668.4.11},\r\n   url = {http://dx.doi.org/10.11646/zootaxa.4668.4.11},\r\n   year = {2019},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018).\n \n \n \n \n\n\n \n Gorsky, G., Bourdin, G., Lombard, F., Pedrotti, M. L., Audrain, S., Bin, N., Boss, E., Bowler, C., Cassar, N., Caudan, L., Chabot, G., Cohen, N. R., Cron, D., De Vargas, C., Dolan, J. R., Douville, E., Elineau, A., Flores, J. M., Ghiglione, J. F., Haëntjens, N., Hertau, M., John, S. G., Kelly, R. L., Koren, I., Lin, Y., Marie, D., Moulin, C., Moucherie, Y., Pesant, S., Picheral, M., Poulain, J., Pujo-Pay, M., Reverdin, G., Romac, S., Sullivan, M. B., Trainic, M., Tressol, M., Troublé, R., Vardi, A., Voolstra, C. R., Wincker, P., Agostini, S., Banaigs, B., Boissin, E., Forcioli, D., Furla, P., Galand, P. E., Gilson, E., Reynaud, S., Sunagawa, S., Thomas, O. P., Thurber, R. L. V., Zoccola, D., Planes, S., Allemand, D., & Karsenti, E.\n\n\n \n\n\n\n Frontiers in Marine Science, 6. 2019.\n \n\n\n\n
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@article{RN335,\r\n   author = {Gorsky, Gabriel and Bourdin, Guillaume and Lombard, Fabien and Pedrotti, Maria Luiza and Audrain, Samuel and Bin, Nicolas and Boss, Emmanuel and Bowler, Chris and Cassar, Nicolas and Caudan, Loic and Chabot, Genevieve and Cohen, Natalie R. and Cron, Daniel and De Vargas, Colomban and Dolan, John R. and Douville, Eric and Elineau, Amanda and Flores, J. Michel and Ghiglione, Jean Francois and Haëntjens, Nils and Hertau, Martin and John, Seth G. and Kelly, Rachel L. and Koren, Ilan and Lin, Yajuan and Marie, Dominique and Moulin, Clémentine and Moucherie, Yohann and Pesant, Stéphane and Picheral, Marc and Poulain, Julie and Pujo-Pay, Mireille and Reverdin, Gilles and Romac, Sarah and Sullivan, Mathew B. and Trainic, Miri and Tressol, Marc and Troublé, Romain and Vardi, Assaf and Voolstra, Christian R. and Wincker, Patrick and Agostini, Sylvain and Banaigs, Bernard and Boissin, Emilie and Forcioli, Didier and Furla, Paola and Galand, Pierre E. and Gilson, Eric and Reynaud, Stéphanie and Sunagawa, Shinichi and Thomas, Olivier P. and Thurber, Rebecca Lisette Vega and Zoccola, Didier and Planes, Serge and Allemand, Denis and Karsenti, Eric},\r\n   title = {Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)},\r\n   journal = {Frontiers in Marine Science},\r\n   volume = {6},\r\n   ISSN = {2296-7745},\r\n   DOI = {10.3389/fmars.2019.00750},\r\n   url = {http://dx.doi.org/10.3389/fmars.2019.00750},\r\n   year = {2019},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean.\n \n \n \n \n\n\n \n Planes, S., Allemand, D., Agostini, S., Banaigs, B., Boissin, E., Boss, E., Bourdin, G., Bowler, C., Douville, E., Flores, J. M., Forcioli, D., Furla, P., Galand, P. E., Ghiglione, J., Gilson, E., Lombard, F., Moulin, C., Pesant, S., Poulain, J., Reynaud, S., Romac, S., Sullivan, M. B., Sunagawa, S., Thomas, O. P., Troublé, R., de Vargas, C., Vega Thurber, R., Voolstra, C. R., Wincker, P., & Zoccola, D.\n\n\n \n\n\n\n PLOS Biology, 17(9): e3000483. 2019.\n \n\n\n\n
\n\n\n\n \n \n \"ThePaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n  \n \n 10 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN336,\r\n   author = {Planes, Serge and Allemand, Denis and Agostini, Sylvain and Banaigs, Bernard and Boissin, Emilie and Boss, Emmanuel and Bourdin, Guillaume and Bowler, Chris and Douville, Eric and Flores, J. Michel and Forcioli, Didier and Furla, Paola and Galand, Pierre E. and Ghiglione, Jean-François and Gilson, Eric and Lombard, Fabien and Moulin, Clémentine and Pesant, Stephane and Poulain, Julie and Reynaud, Stéphanie and Romac, Sarah and Sullivan, Matthew B. and Sunagawa, Shinichi and Thomas, Olivier P. and Troublé, Romain and de Vargas, Colomban and Vega Thurber, Rebecca and Voolstra, Christian R. and Wincker, Patrick and Zoccola, Didier},\r\n   title = {The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean},\r\n   journal = {PLOS Biology},\r\n   volume = {17},\r\n   number = {9},\r\n   pages = {e3000483},\r\n   ISSN = {1545-7885},\r\n   DOI = {10.1371/journal.pbio.3000483},\r\n   url = {http://dx.doi.org/10.1371/journal.pbio.3000483},\r\n   year = {2019},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.\n \n \n \n \n\n\n \n Hume, B. C. C., Ziegler, M., Poulain, J., Pochon, X., Romac, S., Boissin, E., de Vargas, C., Planes, S., Wincker, P., & Voolstra, C. R.\n\n\n \n\n\n\n PeerJ, 6: e4816. 2018.\n \n\n\n\n
\n\n\n\n \n \n \"AnPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{RN333,\r\n   author = {Hume, Benjamin C. C. and Ziegler, Maren and Poulain, Julie and Pochon, Xavier and Romac, Sarah and Boissin, Emilie and de Vargas, Colomban and Planes, Serge and Wincker, Patrick and Voolstra, Christian R.},\r\n   title = {An improved primer set and amplification protocol with increased specificity and sensitivity targeting the <i>Symbiodinium</i> ITS2 region},\r\n   journal = {PeerJ},\r\n   volume = {6},\r\n   pages = {e4816},\r\n   ISSN = {2167-8359},\r\n   DOI = {10.7717/peerj.4816},\r\n   url = {http://dx.doi.org/10.7717/peerj.4816},\r\n   year = {2018},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n \n Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems.\n \n \n \n \n\n\n \n Ziegler, M., Quéré, G., Ghiglione, J., Iwankow, G., Barbe, V., Boissin, E., Wincker, P., Planes, S., & Voolstra, C. R.\n\n\n \n\n\n\n Marine Pollution Bulletin, 129(1): 392-398. 2018.\n \n\n\n\n
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@article{RN334,\r\n   author = {Ziegler, Maren and Quéré, Gaëlle and Ghiglione, Jean-François and Iwankow, Guillaume and Barbe, Valérie and Boissin, Emilie and Wincker, Patrick and Planes, Serge and Voolstra, Christian R.},\r\n   title = {Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems},\r\n   journal = {Marine Pollution Bulletin},\r\n   volume = {129},\r\n   number = {1},\r\n   pages = {392-398},\r\n   ISSN = {0025-326X},\r\n   DOI = {10.1016/j.marpolbul.2018.02.044},\r\n   url = {http://dx.doi.org/10.1016/j.marpolbul.2018.02.044},\r\n   year = {2018},\r\n   type = {Journal Article}\r\n}\r\n\r\n
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