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\n  \n 2023\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n Multiple Case Physics-Informed Neural Network for Biomedical Tube Flows.\n \n \n \n\n\n \n Wong, H. S.; Chan, W. X.; Li, B. H.; and Yap, C. H.\n\n\n \n\n\n\n 2023.\n \n\n\n\n
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@misc{wong2023multiple,\n      title={Multiple Case Physics-Informed Neural Network for Biomedical Tube Flows}, \n      author={Hong Shen Wong and Wei Xuan Chan and Bing Huan Li and Choon Hwai Yap},\n      year={2023},\n      eprint={2309.15294},\n      archivePrefix={arXiv},\n      primaryClass={physics.flu-dyn}\n}\n\n
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\n \n\n \n \n \n \n \n \n Pre-Training Varied Vascular Geometries with a Deep Learning Side Network in Physics-Informed Neural Networks Simulations of Vascular Fluid Dynamics.\n \n \n \n \n\n\n \n Wong, H. S.; Li, B.; Chan, W. X.; and Yap, C. H.\n\n\n \n\n\n\n June 2023.\n 28th Congress of the European Society of Biomechanics (ESBiomech23)\n\n\n\n
\n\n\n\n \n \n \"Pre-TrainingPaper\n  \n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@conference{ESBconference23,\n    title        = {Pre-Training Varied Vascular Geometries with a Deep Learning Side Network in Physics-Informed Neural Networks Simulations of Vascular Fluid Dynamics},\n    author       = {Wong, Hong Shen\n\t\t\t\t\tand Li, Binghuan\n\t\t\t\t\tand Chan, Wei Xuan\n\t\t\t\t\tand Yap, Choon Hwai},\n    year         = 2023,\n    month        = {June},\n    note         = {28th Congress of the European Society of Biomechanics (ESBiomech23)},\n    organization = {28th Congress of the European Society of Biomechanics (ESBiomech23)},\n\turl={https://esbiomech.org/conference/archive/2023maastricht/355.pdf}\n}\n\n
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\n \n\n \n \n \n \n \n \n Fluid Mechanical Effects of Fetal Aortic Valvuloplasty for Cases of Critical Aortic Stenosis with Evolving Hypoplastic Left Heart Syndrome.\n \n \n \n \n\n\n \n Wong, H. S.; Li, B.; Tulzer, A.; Tulzer, G.; and Yap, C. H.\n\n\n \n\n\n\n Annals of Biomedical Engineering. Feb 2023.\n \n\n\n\n
\n\n\n\n \n \n \"FluidPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@Article{Wong2023,\nauthor={Wong, Hong Shen\nand Li, Binghuan\nand Tulzer, Andreas\nand Tulzer, Gerald\nand Yap, Choon Hwai},\ntitle={Fluid Mechanical Effects of Fetal Aortic Valvuloplasty for Cases of Critical Aortic Stenosis with Evolving Hypoplastic Left Heart Syndrome},\njournal={Annals of Biomedical Engineering},\nyear={2023},\nmonth={Feb},\nday={13},\nabstract={Fetuses with critical aortic stenosis (FAS) are at high risk of progression to HLHS by the time of birth (and are thus termed ``evolving HLHS''). An in-utero catheter-based intervention, fetal aortic valvuloplasty (FAV), has shown promise as an intervention strategy to circumvent the progression, but its impact on the heart's biomechanics is not well understood. We performed patient-specific computational fluid dynamic (CFD) simulations based on 4D fetal echocardiography to assess the changes in the fluid mechanical environment in the FAS left ventricle (LV) directly before and 2 days after FAV. Echocardiograms of five FAS cases with technically successful FAV were retrospectively analysed. FAS compromised LV stroke volume and ejection fraction, but FAV rescued it significantly. Calculations to match simulations to clinical measurements showed that FAV approximately doubled aortic valve orifice area, but it remained much smaller than in healthy hearts. Diseased LVs had mildly stenotic mitral valves, which generated fast and narrow diastolic mitral inflow jet and vortex rings that remained unresolved directly after FAV. FAV further caused aortic valve damage and high-velocity regurgitation. The high-velocity aortic regurgitation jet and vortex ring caused a chaotic flow field upon impinging the apex, which drastically exacerbated the already high energy losses and poor flow energy efficiency of FAS LVs. Two days after the procedure, FAV did not alter wall shear stress (WSS) spatial patterns of diseased LV but elevated WSS magnitudes, and the poor blood turnover in pre-FAV LVs did not significantly improve directly after FAV. FAV improved FAS LV's flow function, but it also led to highly chaotic flow patterns and excessively high energy losses due to the introduction of aortic regurgitation directly after the intervention. Further studies analysing the effects several weeks after FAV are needed to understand the effects of such biomechanics on morphological development.},\nissn={1573-9686},\ndoi={10.1007/s10439-023-03152-x},\nurl={https://doi.org/10.1007/s10439-023-03152-x}\n}\n\n\n\n\n
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\n Fetuses with critical aortic stenosis (FAS) are at high risk of progression to HLHS by the time of birth (and are thus termed ``evolving HLHS''). An in-utero catheter-based intervention, fetal aortic valvuloplasty (FAV), has shown promise as an intervention strategy to circumvent the progression, but its impact on the heart's biomechanics is not well understood. We performed patient-specific computational fluid dynamic (CFD) simulations based on 4D fetal echocardiography to assess the changes in the fluid mechanical environment in the FAS left ventricle (LV) directly before and 2 days after FAV. Echocardiograms of five FAS cases with technically successful FAV were retrospectively analysed. FAS compromised LV stroke volume and ejection fraction, but FAV rescued it significantly. Calculations to match simulations to clinical measurements showed that FAV approximately doubled aortic valve orifice area, but it remained much smaller than in healthy hearts. Diseased LVs had mildly stenotic mitral valves, which generated fast and narrow diastolic mitral inflow jet and vortex rings that remained unresolved directly after FAV. FAV further caused aortic valve damage and high-velocity regurgitation. The high-velocity aortic regurgitation jet and vortex ring caused a chaotic flow field upon impinging the apex, which drastically exacerbated the already high energy losses and poor flow energy efficiency of FAS LVs. Two days after the procedure, FAV did not alter wall shear stress (WSS) spatial patterns of diseased LV but elevated WSS magnitudes, and the poor blood turnover in pre-FAV LVs did not significantly improve directly after FAV. FAV improved FAS LV's flow function, but it also led to highly chaotic flow patterns and excessively high energy losses due to the introduction of aortic regurgitation directly after the intervention. Further studies analysing the effects several weeks after FAV are needed to understand the effects of such biomechanics on morphological development.\n
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\n  \n 2021\n \n \n (2)\n \n \n
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\n \n\n \n \n \n \n \n \n Fast and Automated Segmentation for the Three-Directional Multi-Slice Cine Myocardial Velocity Mapping.\n \n \n \n \n\n\n \n Wu, Y.; Hatipoglu, S.; Alonso-Álvarez, D.; Gatehouse, P.; Li, B.; Gao, Y.; Firmin, D.; Keegan, J.; and Yang, G.\n\n\n \n\n\n\n Diagnostics, 11(2). 2021.\n \n\n\n\n
\n\n\n\n \n \n \"FastPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n  \n \n 6 downloads\n \n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@Article{diagnostics11020346,\nAUTHOR = {Wu, Yinzhe and Hatipoglu, Suzan and Alonso-Álvarez, Diego and Gatehouse, Peter and Li, Binghuan and Gao, Yikai and Firmin, David and Keegan, Jennifer and Yang, Guang},\nTITLE = {Fast and Automated Segmentation for the Three-Directional Multi-Slice Cine Myocardial Velocity Mapping},\nJOURNAL = {Diagnostics},\nVOLUME = {11},\nYEAR = {2021},\nNUMBER = {2},\nARTICLE-NUMBER = {346},\nURL = {https://www.mdpi.com/2075-4418/11/2/346},\nPubMedID = {33669747},\nISSN = {2075-4418},\nABSTRACT = {Three-directional cine multi-slice left ventricular myocardial velocity mapping (3Dir MVM) is a cardiac magnetic resonance (CMR) technique that allows the assessment of cardiac motion in three orthogonal directions. Accurate and reproducible delineation of the myocardium is crucial for accurate analysis of peak systolic and diastolic myocardial velocities. In addition to the conventionally available magnitude CMR data, 3Dir MVM also provides three orthogonal phase velocity mapping datasets, which are used to generate velocity maps. These velocity maps may also be used to facilitate and improve the myocardial delineation. Based on the success of deep learning in medical image processing, we propose a novel fast and automated framework that improves the standard U-Net-based methods on these CMR multi-channel data (magnitude and phase velocity mapping) by cross-channel fusion with an attention module and the shape information-based post-processing to achieve accurate delineation of both epicardial and endocardial contours. To evaluate the results, we employ the widely used Dice Scores and the quantification of myocardial longitudinal peak velocities. Our proposed network trained with multi-channel data shows superior performance compared to standard U-Net-based networks trained on single-channel data. The obtained results are promising and provide compelling evidence for the design and application of our multi-channel image analysis of the 3Dir MVM CMR data.},\nDOI = {10.3390/diagnostics11020346}\n}\n\n\n
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\n Three-directional cine multi-slice left ventricular myocardial velocity mapping (3Dir MVM) is a cardiac magnetic resonance (CMR) technique that allows the assessment of cardiac motion in three orthogonal directions. Accurate and reproducible delineation of the myocardium is crucial for accurate analysis of peak systolic and diastolic myocardial velocities. In addition to the conventionally available magnitude CMR data, 3Dir MVM also provides three orthogonal phase velocity mapping datasets, which are used to generate velocity maps. These velocity maps may also be used to facilitate and improve the myocardial delineation. Based on the success of deep learning in medical image processing, we propose a novel fast and automated framework that improves the standard U-Net-based methods on these CMR multi-channel data (magnitude and phase velocity mapping) by cross-channel fusion with an attention module and the shape information-based post-processing to achieve accurate delineation of both epicardial and endocardial contours. To evaluate the results, we employ the widely used Dice Scores and the quantification of myocardial longitudinal peak velocities. Our proposed network trained with multi-channel data shows superior performance compared to standard U-Net-based networks trained on single-channel data. The obtained results are promising and provide compelling evidence for the design and application of our multi-channel image analysis of the 3Dir MVM CMR data.\n
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\n \n\n \n \n \n \n \n \n Recent Advances in Fibrosis and Scar Segmentation From Cardiac MRI: A State-of-the-Art Review and Future Perspectives.\n \n \n \n \n\n\n \n Wu, Y.; Tang, Z.; Li, B.; Firmin, D.; and Yang, G.\n\n\n \n\n\n\n Frontiers in Physiology, 12: 1111. 2021.\n \n\n\n\n
\n\n\n\n \n \n \"RecentPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@ARTICLE{10.3389/fphys.2021.709230,\n  \nAUTHOR={Wu, Yinzhe and Tang, Zeyu and Li, Binghuan and Firmin, David and Yang, Guang},   \n\t \nTITLE={Recent Advances in Fibrosis and Scar Segmentation From Cardiac MRI: A State-of-the-Art Review and Future Perspectives},      \n\t\nJOURNAL={Frontiers in Physiology},      \n\t\nVOLUME={12},      \n\nPAGES={1111},     \n\t\nYEAR={2021},      \n\t  \nURL={https://www.frontiersin.org/article/10.3389/fphys.2021.709230},       \n\t\nDOI={10.3389/fphys.2021.709230},      \n\t\nISSN={1664-042X},   \n   \nABSTRACT={Segmentation of cardiac fibrosis and scars is essential for clinical diagnosis and can provide invaluable guidance for the treatment of cardiac diseases. Late Gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) has been successful in guiding the clinical diagnosis and treatment reliably. For LGE CMR, many methods have demonstrated success in accurately segmenting scarring regions. Co-registration with other non-contrast-agent (non-CA) modalities [e.g., balanced steady-state free precession (bSSFP) cine magnetic resonance imaging (MRI)] can further enhance the efficacy of automated segmentation of cardiac anatomies. Many conventional methods have been proposed to provide automated or semi-automated segmentation of scars. With the development of deep learning in recent years, we can also see more advanced methods that are more efficient in providing more accurate segmentations. This paper conducts a state-of-the-art review of conventional and current state-of-the-art approaches utilizing different modalities for accurate cardiac fibrosis and scar segmentation.}\n}\n\n
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\n Segmentation of cardiac fibrosis and scars is essential for clinical diagnosis and can provide invaluable guidance for the treatment of cardiac diseases. Late Gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) has been successful in guiding the clinical diagnosis and treatment reliably. For LGE CMR, many methods have demonstrated success in accurately segmenting scarring regions. Co-registration with other non-contrast-agent (non-CA) modalities [e.g., balanced steady-state free precession (bSSFP) cine magnetic resonance imaging (MRI)] can further enhance the efficacy of automated segmentation of cardiac anatomies. Many conventional methods have been proposed to provide automated or semi-automated segmentation of scars. With the development of deep learning in recent years, we can also see more advanced methods that are more efficient in providing more accurate segmentations. This paper conducts a state-of-the-art review of conventional and current state-of-the-art approaches utilizing different modalities for accurate cardiac fibrosis and scar segmentation.\n
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