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\n  \n 2021\n \n \n (7)\n \n \n
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\n \n\n \n \n \n \n \n Enabling reproducible re-analysis of single-cell data.\n \n \n \n\n\n \n Skinnider, M. A; Squair, J. W; and Courtine, G.\n\n\n \n\n\n\n 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@misc{skinnider2021enabling,\r\n  title={Enabling reproducible re-analysis of single-cell data},\r\n  author={Skinnider, Michael A and Squair, Jordan W and Courtine, Gr{\\'e}goire},\r\n  year={2021},\r\n  publisher={BioMed Central}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Chemical language models enable navigation in sparsely populated chemical space.\n \n \n \n\n\n \n Skinnider, M. A; Stacey, R G.; Wishart, D. S; and Foster, L. J\n\n\n \n\n\n\n Nature Machine Intelligence,1–12. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{skinnider2021chemical,\r\n  title={Chemical language models enable navigation in sparsely populated chemical space},\r\n  author={Skinnider, Michael A and Stacey, R Greg and Wishart, David S and Foster, Leonard J},\r\n  journal={Nature Machine Intelligence},\r\n  pages={1--12},\r\n  year={2021},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Proteomic portraits reveal evolutionarily conserved and divergent responses to spinal cord injury.\n \n \n \n\n\n \n Skinnider, M. A; Rogalski, J.; Tigchelaar, S.; Manouchehri, N.; Prudova, A.; Jackson, A. M; Nielsen, K.; Jeong, J.; Chaudhary, S.; Shortt, K.; and others\n\n\n \n\n\n\n Molecular & Cellular Proteomics,100096. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{skinnider2021proteomic,\r\n  title={Proteomic portraits reveal evolutionarily conserved and divergent responses to spinal cord injury},\r\n  author={Skinnider, Michael A and Rogalski, Jason and Tigchelaar, Seth and Manouchehri, Neda and Prudova, Anna and Jackson, Angela M and Nielsen, Karina and Jeong, Jaihyun and Chaudhary, Shalini and Shortt, Katelyn and others},\r\n  journal={Molecular \\& Cellular Proteomics},\r\n  pages={100096},\r\n  year={2021},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n An atlas of protein-protein interactions across mouse tissues.\n \n \n \n\n\n \n Skinnider, M. A; Scott, N. E; Prudova, A.; Kerr, C. H; Stoynov, N.; Stacey, R G.; Chan, Q. W.; Rattray, D.; Gsponer, J.; and Foster, L. J\n\n\n \n\n\n\n Cell. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2021atlas,\r\n  title={An atlas of protein-protein interactions across mouse tissues},\r\n  author={Skinnider, Michael A and Scott, Nichollas E and Prudova, Anna and Kerr, Craig H and Stoynov, Nikolay and Stacey, R Greg and Chan, Queenie WT and Rattray, David and Gsponer, J{\\"o}rg and Foster, Leonard J},\r\n  journal={Cell},\r\n  year={2021},\r\n  publisher={Cell Press}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments.\n \n \n \n\n\n \n Skinnider, M. A; and Foster, L. J\n\n\n \n\n\n\n Nature Methods,1–10. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2021meta,\r\n  title={Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments},\r\n  author={Skinnider, Michael A and Foster, Leonard J},\r\n  journal={Nature Methods},\r\n  pages={1--10},\r\n  year={2021},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n On the robustness of graph-based clustering to random network alterations.\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; and Foster, L. J\n\n\n \n\n\n\n Molecular & Cellular Proteomics, 20: 100002. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2021robustness,\r\n  title={On the robustness of graph-based clustering to random network alterations},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Foster, Leonard J},\r\n  journal={Molecular \\& Cellular Proteomics},\r\n  volume={20},\r\n  pages={100002},\r\n  year={2021},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n PrInCE: an R/Bioconductor package for protein–protein interaction network inference from co-fractionation mass spectrometry data.\n \n \n \n\n\n \n Skinnider, M. A; Cai, C.; Stacey, R G.; and Foster, L. J\n\n\n \n\n\n\n Bioinformatics, 1: 3. 2021.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2021prince,\r\n  title={PrInCE: an R/Bioconductor package for protein--protein interaction network inference from co-fractionation mass spectrometry data},\r\n  author={Skinnider, Michael A and Cai, Charley and Stacey, R Greg and Foster, Leonard J},\r\n  journal={Bioinformatics},\r\n  volume={1},\r\n  pages={3},\r\n  year={2021}\r\n}\r\n\r\n
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\n  \n 2020\n \n \n (3)\n \n \n
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\n \n\n \n \n \n \n \n Dynamic rewiring of the human interactome by interferon signaling.\n \n \n \n\n\n \n Kerr, C. H; Skinnider, M. A; Andrews, D. D.; Madero, A. M; Chan, Q. W.; Stacey, R G.; Stoynov, N.; Jan, E.; and Foster, L. J\n\n\n \n\n\n\n Genome biology, 21(1): 1–36. 2020.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{kerr2020dynamic,\r\n  title={Dynamic rewiring of the human interactome by interferon signaling},\r\n  author={Kerr, Craig H and Skinnider, Michael A and Andrews, Daniel DT and Madero, Angel M and Chan, Queenie WT and Stacey, R Greg and Stoynov, Nikolay and Jan, Eric and Foster, Leonard J},\r\n  journal={Genome biology},\r\n  volume={21},\r\n  number={1},\r\n  pages={1--36},\r\n  year={2020},\r\n  publisher={BioMed Central}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Cell type prioritization in single-cell data.\n \n \n \n\n\n \n Skinnider, M. A; Squair, J. W; Kathe, C.; Anderson, M. A; Gautier, M.; Matson, K. J.; Milano, M.; Hutson, T. H; Barraud, Q.; Phillips, A. A; and others\n\n\n \n\n\n\n Nature Biotechnology,1–5. 2020.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2020cell,\r\n  title={Cell type prioritization in single-cell data},\r\n  author={Skinnider, Michael A and Squair, Jordan W and Kathe, Claudia and Anderson, Mark A and Gautier, Matthieu and Matson, Kaya JE and Milano, Marco and Hutson, Thomas H and Barraud, Quentin and Phillips, Aaron A and others},\r\n  journal={Nature Biotechnology},\r\n  pages={1--5},\r\n  year={2020},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.\n \n \n \n\n\n \n Merwin, N. J; Mousa, W. K; Dejong, C. A; Skinnider, M. A; Cannon, M. J; Li, H.; Dial, K.; Gunabalasingam, M.; Johnston, C.; and Magarvey, N. A\n\n\n \n\n\n\n Proceedings of the National Academy of Sciences, 117(1): 371–380. 2020.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{merwin2020deepripp,\r\n  title={DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products},\r\n  author={Merwin, Nishanth J and Mousa, Walaa K and Dejong, Chris A and Skinnider, Michael A and Cannon, Michael J and Li, Haoxin and Dial, Keshav and Gunabalasingam, Mathusan and Johnston, Chad and Magarvey, Nathan A},\r\n  journal={Proceedings of the National Academy of Sciences},\r\n  volume={117},\r\n  number={1},\r\n  pages={371--380},\r\n  year={2020},\r\n  publisher={National Acad Sciences}\r\n}\r\n\r\n
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\n  \n 2019\n \n \n (1)\n \n \n
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\n \n\n \n \n \n \n \n Evaluating measures of association for single-cell transcriptomics.\n \n \n \n\n\n \n Skinnider, M. A; Squair, J. W; and Foster, L. J\n\n\n \n\n\n\n Nature methods, 16(5): 381–386. 2019.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n 
@article{skinnider2019evaluating,\r\n  title={Evaluating measures of association for single-cell transcriptomics},\r\n  author={Skinnider, Michael A and Squair, Jordan W and Foster, Leonard J},\r\n  journal={Nature methods},\r\n  volume={16},\r\n  number={5},\r\n  pages={381--386},\r\n  year={2019},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n  \n 2018\n \n \n (5)\n \n \n
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\n \n\n \n \n \n \n \n Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury.\n \n \n \n\n\n \n Squair, J. W; Tigchelaar, S.; Moon, K.; Liu, J.; Tetzlaff, W.; Kwon, B. K; Krassioukov, A. V; West, C. R; Foster, L. J; and Skinnider, M. A\n\n\n \n\n\n\n Elife, 7: e39188. 2018.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{squair2018integrated,\r\n  title={Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury},\r\n  author={Squair, Jordan W and Tigchelaar, Seth and Moon, Kyung-Mee and Liu, Jie and Tetzlaff, Wolfram and Kwon, Brian K and Krassioukov, Andrei V and West, Christopher R and Foster, Leonard J and Skinnider, Michael A},\r\n  journal={Elife},\r\n  volume={7},\r\n  pages={e39188},\r\n  year={2018},\r\n  publisher={eLife Sciences Publications Limited}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis.\n \n \n \n\n\n \n Skinnider, M. A; Johnston, C. W; Merwin, N. J; Dejong, C. A; and Magarvey, N. A\n\n\n \n\n\n\n BMC genomics, 19(1): 45. 2018.\n \n\n\n\n
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@article{skinnider2018global,\r\n  title={Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis},\r\n  author={Skinnider, Michael A and Johnston, Chad W and Merwin, Nishanth J and Dejong, Chris A and Magarvey, Nathan A},\r\n  journal={BMC genomics},\r\n  volume={19},\r\n  number={1},\r\n  pages={45},\r\n  year={2018},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Predictors of sustained research involvement among MD/PhD programme graduates.\n \n \n \n\n\n \n Skinnider, M. A; Twa, D. D.; Squair, J. W; Rosenblum, N. D; Lukac, C. D; and Group, C. M. P. I.\n\n\n \n\n\n\n Medical Education, 52(5): 536–545. 2018.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2018predictors,\r\n  title={Predictors of sustained research involvement among MD/PhD programme graduates},\r\n  author={Skinnider, Michael A and Twa, David DW and Squair, Jordan W and Rosenblum, Norman D and Lukac, Christine D and Canadian MD/PhD Program Investigation Group},\r\n  journal={Medical Education},\r\n  volume={52},\r\n  number={5},\r\n  pages={536--545},\r\n  year={2018},\r\n  publisher={Wiley Online Library}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Genomic data integration systematically biases interactome mapping.\n \n \n \n\n\n \n Skinnider, M. A; Stacey, R G.; and Foster, L. J\n\n\n \n\n\n\n PLoS computational biology, 14(10): e1006474. 2018.\n \n\n\n\n
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@article{skinnider2018genomic,\r\n  title={Genomic data integration systematically biases interactome mapping},\r\n  author={Skinnider, Michael A and Stacey, R Greg and Foster, Leonard J},\r\n  journal={PLoS computational biology},\r\n  volume={14},\r\n  number={10},\r\n  pages={e1006474},\r\n  year={2018},\r\n  publisher={Public Library of Science San Francisco, CA USA}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Context-specific interactions in literature-curated protein interaction databases.\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; Chik, J. H.; and Foster, L. J\n\n\n \n\n\n\n BMC genomics, 19(1): 758. 2018.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2018context,\r\n  title={Context-specific interactions in literature-curated protein interaction databases},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Chik, Jenny HL and Foster, Leonard J},\r\n  journal={BMC genomics},\r\n  volume={19},\r\n  number={1},\r\n  pages={758},\r\n  year={2018},\r\n  publisher={Springer}\r\n}\r\n
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\n  \n 2017\n \n \n (7)\n \n \n
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\n \n\n \n \n \n \n \n Characteristics and outcomes of Canadian MD/PhD program graduates: a cross-sectional survey.\n \n \n \n\n\n \n Skinnider, M. A; Squair, J. W; Twa, D. D.; Ji, J. X; Kuzyk, A.; Wang, X.; Steadman, P. E; Zaslavsky, K.; Dey, A. K; Eisenberg, M. J; and others\n\n\n \n\n\n\n CMAJ open, 5(2): E308. 2017.\n \n\n\n\n
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@article{skinnider2017characteristics,\r\n  title={Characteristics and outcomes of Canadian MD/PhD program graduates: a cross-sectional survey},\r\n  author={Skinnider, Michael A and Squair, Jordan W and Twa, David DW and Ji, Jennifer X and Kuzyk, Alexandra and Wang, Xin and Steadman, Patrick E and Zaslavsky, Kirill and Dey, Ayan K and Eisenberg, Mark J and others},\r\n  journal={CMAJ open},\r\n  volume={5},\r\n  number={2},\r\n  pages={E308},\r\n  year={2017},\r\n  publisher={Canadian Medical Association}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm.\n \n \n \n\n\n \n Skinnider, M. A; Dejong, C. A; Franczak, B. C; McNicholas, P. D; and Magarvey, N. A\n\n\n \n\n\n\n Journal of Cheminformatics, 9(1): 46. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2017comparative,\r\n  title={Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm},\r\n  author={Skinnider, Michael A and Dejong, Chris A and Franczak, Brian C and McNicholas, Paul D and Magarvey, Nathan A},\r\n  journal={Journal of Cheminformatics},\r\n  volume={9},\r\n  number={1},\r\n  pages={46},\r\n  year={2017},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Cross-sectional-derived determinants of satisfaction with physician-scientist training among Canadian MD/PhD graduates.\n \n \n \n\n\n \n Twa, D. D.; Skinnider, M. A; Squair, J. W; Lukac, C. D; and Group, C. M. P. I.\n\n\n \n\n\n\n PloS one, 12(9): e0185218. 2017.\n \n\n\n\n
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@article{twa2017cross,\r\n  title={Cross-sectional-derived determinants of satisfaction with physician-scientist training among Canadian MD/PhD graduates},\r\n  author={Twa, David DW and Skinnider, Michael A and Squair, Jordan W and Lukac, Christine D and Canadian MD/PhD Program Investigation Group},\r\n  journal={PloS one},\r\n  volume={12},\r\n  number={9},\r\n  pages={e0185218},\r\n  year={2017},\r\n  publisher={Public Library of Science San Francisco, CA USA}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Statistical reanalysis of natural products reveals increasing chemical diversity.\n \n \n \n\n\n \n Skinnider, M. A; and Magarvey, N. A\n\n\n \n\n\n\n Proceedings of the National Academy of Sciences, 114(31): E6271–E6272. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2017statistical,\r\n  title={Statistical reanalysis of natural products reveals increasing chemical diversity},\r\n  author={Skinnider, Michael A and Magarvey, Nathan A},\r\n  journal={Proceedings of the National Academy of Sciences},\r\n  volume={114},\r\n  number={31},\r\n  pages={E6271--E6272},\r\n  year={2017},\r\n  publisher={National Acad Sciences}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n PRISM 3: expanded prediction of natural product chemical structures from microbial genomes.\n \n \n \n\n\n \n Skinnider, M. A; Merwin, N. J; Johnston, C. W; and Magarvey, N. A\n\n\n \n\n\n\n Nucleic acids research, 45(W1): W49–W54. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2017prism,\r\n  title={PRISM 3: expanded prediction of natural product chemical structures from microbial genomes},\r\n  author={Skinnider, Michael A and Merwin, Nishanth J and Johnston, Chad W and Magarvey, Nathan A},\r\n  journal={Nucleic acids research},\r\n  volume={45},\r\n  number={W1},\r\n  pages={W49--W54},\r\n  year={2017},\r\n  publisher={Oxford University Press}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).\n \n \n \n\n\n \n Stacey, R G.; Skinnider, M. A; Scott, N. E; and Foster, L. J\n\n\n \n\n\n\n BMC bioinformatics, 18(1): 1–14. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{stacey2017rapid,\r\n  title={A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)},\r\n  author={Stacey, R Greg and Skinnider, Michael A and Scott, Nichollas E and Foster, Leonard J},\r\n  journal={BMC bioinformatics},\r\n  volume={18},\r\n  number={1},\r\n  pages={1--14},\r\n  year={2017},\r\n  publisher={BioMed Central}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n A targeted proteomics analysis of cerebrospinal fluid after acute human spinal cord injury.\n \n \n \n\n\n \n Streijger, F.; Skinnider, M. A; Rogalski, J. C; Balshaw, R.; Shannon, C. P; Prudova, A.; Belanger, L.; Ritchie, L.; Tsang, A.; Christie, S.; and others\n\n\n \n\n\n\n Journal of Neurotrauma, 34(12): 2054–2068. 2017.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{streijger2017targeted,\r\n  title={A targeted proteomics analysis of cerebrospinal fluid after acute human spinal cord injury},\r\n  author={Streijger, Femke and Skinnider, Michael A and Rogalski, Jason C and Balshaw, Robert and Shannon, Casey P and Prudova, Anna and Belanger, Lise and Ritchie, Leanna and Tsang, Angela and Christie, Sean and others},\r\n  journal={Journal of Neurotrauma},\r\n  volume={34},\r\n  number={12},\r\n  pages={2054--2068},\r\n  year={2017},\r\n  publisher={Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA}\r\n}\r\n\r\n
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\n  \n 2016\n \n \n (4)\n \n \n
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\n \n\n \n \n \n \n \n Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching.\n \n \n \n\n\n \n Dejong, C. A; Chen, G. M; Li, H.; Johnston, C. W; Edwards, M. R; Rees, P. N; Skinnider, M. A; Webster, A. L.; and Magarvey, N. A\n\n\n \n\n\n\n Nature chemical biology, 12(12): 1007–1014. 2016.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{dejong2016polyketide,\r\n  title={Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching},\r\n  author={Dejong, Chris A and Chen, Gregory M and Li, Haoxin and Johnston, Chad W and Edwards, Mclean R and Rees, Philip N and Skinnider, Michael A and Webster, Andrew LH and Magarvey, Nathan A},\r\n  journal={Nature chemical biology},\r\n  volume={12},\r\n  number={12},\r\n  pages={1007--1014},\r\n  year={2016},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining.\n \n \n \n\n\n \n Skinnider, M. A; Johnston, C. W; Edgar, R. E; Dejong, C. A; Merwin, N. J; Rees, P. N; and Magarvey, N. A\n\n\n \n\n\n\n Proceedings of the National Academy of Sciences, 113(42): E6343–E6351. 2016.\n \n\n\n\n
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@article{skinnider2016genomic,\r\n  title={Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining},\r\n  author={Skinnider, Michael A and Johnston, Chad W and Edgar, Robyn E and Dejong, Chris A and Merwin, Nishanth J and Rees, Philip N and Magarvey, Nathan A},\r\n  journal={Proceedings of the National Academy of Sciences},\r\n  volume={113},\r\n  number={42},\r\n  pages={E6343--E6351},\r\n  year={2016},\r\n  publisher={National Acad Sciences}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Assembly and clustering of natural antibiotics guides target identification.\n \n \n \n\n\n \n Johnston, C. W; Skinnider, M. A; Dejong, C. A; Rees, P. N; Chen, G. M; Walker, C. G; French, S.; Brown, E. D; Bérdy, J.; Liu, D. Y; and others\n\n\n \n\n\n\n Nature chemical biology, 12(4): 233–239. 2016.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{johnston2016assembly,\r\n  title={Assembly and clustering of natural antibiotics guides target identification},\r\n  author={Johnston, Chad W and Skinnider, Michael A and Dejong, Chris A and Rees, Philip N and Chen, Gregory M and Walker, Chelsea G and French, Shawn and Brown, Eric D and B{\\'e}rdy, J{\\'a}nos and Liu, Dennis Y and others},\r\n  journal={Nature chemical biology},\r\n  volume={12},\r\n  number={4},\r\n  pages={233--239},\r\n  year={2016},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Informatic search strategies to discover analogues and variants of natural product archetypes.\n \n \n \n\n\n \n Johnston, C. W; Connaty, A. D; Skinnider, M. A; Li, Y.; Grunwald, A.; Wyatt, M. A; Kerr, R. G; and Magarvey, N. A\n\n\n \n\n\n\n Journal of industrial microbiology & biotechnology, 43(2-3): 293–298. 2016.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{johnston2016informatic,\r\n  title={Informatic search strategies to discover analogues and variants of natural product archetypes},\r\n  author={Johnston, Chad W and Connaty, Alex D and Skinnider, Michael A and Li, Yong and Grunwald, Alyssa and Wyatt, Morgan A and Kerr, Russell G and Magarvey, Nathan A},\r\n  journal={Journal of industrial microbiology \\& biotechnology},\r\n  volume={43},\r\n  number={2-3},\r\n  pages={293--298},\r\n  year={2016},\r\n  publisher={Springer}\r\n}\r\n\r\n
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\n  \n 2015\n \n \n (5)\n \n \n
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\n \n\n \n \n \n \n \n The Canadian clinician-scientist training program must be reinstated.\n \n \n \n\n\n \n Twa, D. D.; Squair, J. W; Skinnider, M. A; Ji, J. X; and others\n\n\n \n\n\n\n The Journal of Clinical Investigation, 125(12): 4317–4319. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{twa2015canadian,\r\n  title={The Canadian clinician-scientist training program must be reinstated},\r\n  author={Twa, David DW and Squair, Jordan W and Skinnider, Michael A and Ji, Jennifer X and others},\r\n  journal={The Journal of Clinical Investigation},\r\n  volume={125},\r\n  number={12},\r\n  pages={4317--4319},\r\n  year={2015},\r\n  publisher={Am Soc Clin Investig}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Genomes to natural products prediction informatics for secondary metabolomes (PRISM).\n \n \n \n\n\n \n Skinnider, M. A; Dejong, C. A; Rees, P. N; Johnston, C. W; Li, H.; Webster, A. L.; Wyatt, M. A; and Magarvey, N. A\n\n\n \n\n\n\n Nucleic acids research, 43(20): 9645–9662. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2015genomes,\r\n  title={Genomes to natural products prediction informatics for secondary metabolomes (PRISM)},\r\n  author={Skinnider, Michael A and Dejong, Chris A and Rees, Philip N and Johnston, Chad W and Li, Haoxin and Webster, Andrew LH and Wyatt, Morgan A and Magarvey, Nathan A},\r\n  journal={Nucleic acids research},\r\n  volume={43},\r\n  number={20},\r\n  pages={9645--9662},\r\n  year={2015},\r\n  publisher={Oxford University Press}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products.\n \n \n \n\n\n \n Johnston, C. W; Skinnider, M. A; Wyatt, M. A; Li, X.; Ranieri, M. R.; Yang, L.; Zechel, D. L; Ma, B.; and Magarvey, N. A\n\n\n \n\n\n\n Nature communications, 6(1): 1–11. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{johnston2015automated,\r\n  title={An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products},\r\n  author={Johnston, Chad W and Skinnider, Michael A and Wyatt, Morgan A and Li, Xiang and Ranieri, Michael RM and Yang, Lian and Zechel, David L and Ma, Bin and Magarvey, Nathan A},\r\n  journal={Nature communications},\r\n  volume={6},\r\n  number={1},\r\n  pages={1--11},\r\n  year={2015},\r\n  publisher={Nature Publishing Group}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Exploration of nonribosomal peptide families with an automated informatic search algorithm.\n \n \n \n\n\n \n Yang, L.; Ibrahim, A.; Johnston, C. W; Skinnider, M. A; Ma, B.; and Magarvey, N. A\n\n\n \n\n\n\n Chemistry & biology, 22(9): 1259–1269. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{yang2015exploration,\r\n  title={Exploration of nonribosomal peptide families with an automated informatic search algorithm},\r\n  author={Yang, Lian and Ibrahim, Ashraf and Johnston, Chad W and Skinnider, Michael A and Ma, Bin and Magarvey, Nathan A},\r\n  journal={Chemistry \\& biology},\r\n  volume={22},\r\n  number={9},\r\n  pages={1259--1269},\r\n  year={2015},\r\n  publisher={Elsevier}\r\n}\r\n\r\n
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\n \n\n \n \n \n \n \n Automated identification of depsipeptide natural products by an informatic search algorithm.\n \n \n \n\n\n \n Skinnider, M. A; Johnston, C. W; Zvanych, R.; and Magarvey, N. A\n\n\n \n\n\n\n ChemBioChem, 16(2): 223–227. 2015.\n \n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{skinnider2015automated,\r\n  title={Automated identification of depsipeptide natural products by an informatic search algorithm},\r\n  author={Skinnider, Michael A and Johnston, Chad W and Zvanych, Rostyslav and Magarvey, Nathan A},\r\n  journal={ChemBioChem},\r\n  volume={16},\r\n  number={2},\r\n  pages={223--227},\r\n  year={2015},\r\n  publisher={Wiley Online Library}\r\n}\r\n\r\n
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