var bibbase_data = {"data":"<img src=\"//bibbase.org/img/ajax-loader.gif\" id=\"spinner\"\n  style=\"display: none;\" alt=\"Loading..\" />\n\n<div id=\"bibbase\">\n\n  <script type=\"text/javascript\">\n    var bibbase = {\n      params: {\"bib\":\"https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib\",\"jsonp\":\"1\",\"host\":\"bibbase.org\"},\n      data: [{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"On the varied impact of the Storegga tsunami in northwest Scotland\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Woodroffe\"],\"firstnames\":[\"Sarah\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bustamante-Fernandez\"],\"firstnames\":[\"Emmanuel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lloyd\"],\"firstnames\":[\"Jerry\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Luff\"],\"firstnames\":[\"Jake\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Richards\"],\"firstnames\":[\"Sarah\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Shennan\"],\"firstnames\":[\"Ian\"],\"suffixes\":[]}],\"journal\":\"Journal of Quaternary Science\",\"publisher\":\"Wiley\",\"month\":\"May\",\"year\":\"2023\",\"copyright\":\"http://creativecommons.org/licenses/by/4.0/\",\"language\":\"en\",\"issn\":\"0267-8179, 1099-1417\",\"doi\":\"10.1002/jqs.3539\",\"bibtex\":\"@ARTICLE{Woodroffe2023-cp,\\n  title     = \\\"{On the varied impact of the Storegga tsunami in northwest\\n               Scotland}\\\",\\n  author    = \\\"Woodroffe, Sarah A and Hill, Jon and Bustamante-Fernandez,\\n               Emmanuel and Lloyd, Jerry M and Luff, Jake and Richards, Sarah\\n               and Shennan, Ian\\\",\\n  journal   = \\\"Journal of Quaternary Science\\\",\\n  publisher = \\\"Wiley\\\",\\n  month     =  may,\\n  year      =  2023,\\n  copyright = \\\"http://creativecommons.org/licenses/by/4.0/\\\",\\n  language  = \\\"en\\\",\\n  issn      = \\\"0267-8179, 1099-1417\\\",\\n  doi       = \\\"10.1002/jqs.3539\\\"\\n}\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"Woodroffe, S. A\",\"Hill, J.\",\"Bustamante-Fernandez, E.\",\"Lloyd, J. M\",\"Luff, J.\",\"Richards, S.\",\"Shennan, I.\"],\"key\":\"Woodroffe2023-cp\",\"id\":\"Woodroffe2023-cp\",\"bibbaseid\":\"woodroffe-hill-bustamantefernandez-lloyd-luff-richards-shennan-onthevariedimpactofthestoreggatsunamiinnorthwestscotland-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Resolving tsunami wave dynamics: integrating sedimentology and numerical modelling\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Rush\"],\"firstnames\":[\"Graham\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Peakall\"],\"firstnames\":[\"Jeff\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Johnson\"],\"firstnames\":[\"Michael\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hodson\"],\"firstnames\":[\"Luke\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Barlow\"],\"firstnames\":[\"Natasha\",\"L\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bowman\"],\"firstnames\":[\"Elisabeth\",\"T\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gehrels\"],\"firstnames\":[\"W\",\"Roland\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hodgson\"],\"firstnames\":[\"David\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kesserwani\"],\"firstnames\":[\"Georges\"],\"suffixes\":[]}],\"journal\":\"The depositional record\",\"publisher\":\"Wiley\",\"month\":\"August\",\"year\":\"2023\",\"copyright\":\"http://creativecommons.org/licenses/by/4.0/\",\"language\":\"en\",\"issn\":\"2055-4877\",\"doi\":\"10.1002/dep2.247\",\"bibtex\":\"@ARTICLE{Hill2023-se,\\n  title     = \\\"{Resolving tsunami wave dynamics: integrating sedimentology and\\n               numerical modelling}\\\",\\n  author    = \\\"Hill, Jon and Rush, Graham and Peakall, Jeff and Johnson,\\n               Michael and Hodson, Luke and Barlow, Natasha L M and Bowman,\\n               Elisabeth T and Gehrels, W Roland and Hodgson, David M and\\n               Kesserwani, Georges\\\",\\n  journal   = \\\"The depositional record\\\",\\n  publisher = \\\"Wiley\\\",\\n  month     =  aug,\\n  year      =  2023,\\n  copyright = \\\"http://creativecommons.org/licenses/by/4.0/\\\",\\n  language  = \\\"en\\\",\\n  issn      = \\\"2055-4877\\\",\\n  doi       = \\\"10.1002/dep2.247\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Hill, J.\",\"Rush, G.\",\"Peakall, J.\",\"Johnson, M.\",\"Hodson, L.\",\"Barlow, N. L M\",\"Bowman, E. T\",\"Gehrels, W R.\",\"Hodgson, D. M\",\"Kesserwani, G.\"],\"key\":\"Hill2023-se\",\"id\":\"Hill2023-se\",\"bibbaseid\":\"hill-rush-peakall-johnson-hodson-barlow-bowman-gehrels-etal-resolvingtsunamiwavedynamicsintegratingsedimentologyandnumericalmodelling-2023\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Tidal dynamics drive ooid formation in the Capricorn Channel since the Last Glacial Maximum\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Lee\"],\"firstnames\":[\"Katherine\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Webster\"],\"firstnames\":[\"Jody\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Salles\"],\"firstnames\":[\"Tristan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mawson\"],\"firstnames\":[\"Eleanor\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"journal\":\"Marine geology\",\"pages\":\"106944\",\"month\":\"November\",\"year\":\"2022\",\"keywords\":\"Numerical model; Palaeotides; Sediment; Great Barrier Reef; Ooids\",\"issn\":\"0025-3227\",\"doi\":\"10.1016/j.margeo.2022.106944\",\"bibtex\":\"@ARTICLE{Lee2022-sx,\\n  title    = \\\"{Tidal dynamics drive ooid formation in the Capricorn Channel\\n              since the Last Glacial Maximum}\\\",\\n  author   = \\\"Lee, Katherine C and Webster, Jody M and Salles, Tristan and\\n              Mawson, Eleanor E and Hill, Jon\\\",\\n  journal  = \\\"Marine geology\\\",\\n  pages    = \\\"106944\\\",\\n  month    =  nov,\\n  year     =  2022,\\n  keywords = \\\"Numerical model; Palaeotides; Sediment; Great Barrier Reef; Ooids\\\",\\n  issn     = \\\"0025-3227\\\",\\n  doi      = \\\"10.1016/j.margeo.2022.106944\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Lee, K. C\",\"Webster, J. M\",\"Salles, T.\",\"Mawson, E. E\",\"Hill, J.\"],\"key\":\"Lee2022-sx\",\"id\":\"Lee2022-sx\",\"bibbaseid\":\"lee-webster-salles-mawson-hill-tidaldynamicsdriveooidformationinthecapricornchannelsincethelastglacialmaximum-2022\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Numerical model; Palaeotides; Sediment; Great Barrier Reef; Ooids\"],\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea\",\"journal\":\"Quaternary Science Reviews\",\"volume\":\"293\",\"pages\":\"107719\",\"year\":\"2022\",\"issn\":\"0277-3791\",\"doi\":\"https://doi.org/10.1016/j.quascirev.2022.107719\",\"url\":\"https://www.sciencedirect.com/science/article/pii/S027737912200350X\",\"author\":[{\"firstnames\":[\"Jon\"],\"propositions\":[],\"lastnames\":[\"Hill\"],\"suffixes\":[]},{\"firstnames\":[\"Alexandros\"],\"propositions\":[],\"lastnames\":[\"Avdis\"],\"suffixes\":[]},{\"firstnames\":[\"Geoff\"],\"propositions\":[],\"lastnames\":[\"Bailey\"],\"suffixes\":[]},{\"firstnames\":[\"Kurt\"],\"propositions\":[],\"lastnames\":[\"Lambeck\"],\"suffixes\":[]}],\"keywords\":\"Sea-level change, Shoreline reconstruction, Tidal modelling, Simulation, Hominin dispersal\",\"bibtex\":\"@article{HILL2022107719,\\ntitle = {Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea},\\njournal = {Quaternary Science Reviews},\\nvolume = {293},\\npages = {107719},\\nyear = {2022},\\nissn = {0277-3791},\\ndoi = {https://doi.org/10.1016/j.quascirev.2022.107719},\\nurl = {https://www.sciencedirect.com/science/article/pii/S027737912200350X},\\nauthor = {Jon Hill and Alexandros Avdis and Geoff Bailey and Kurt Lambeck},\\nkeywords = {Sea-level change, Shoreline reconstruction, Tidal modelling, Simulation, Hominin dispersal},\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Avdis, A.\",\"Bailey, G.\",\"Lambeck, K.\"],\"key\":\"HILL2022107719\",\"id\":\"HILL2022107719\",\"bibbaseid\":\"hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022\",\"role\":\"author\",\"urls\":{\"Paper\":\"https://www.sciencedirect.com/science/article/pii/S027737912200350X\"},\"keyword\":[\"Sea-level change\",\"Shoreline reconstruction\",\"Tidal modelling\",\"Simulation\",\"Hominin dispersal\"],\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Sea level rise and the Great Barrier Reef the future implications on reef tidal dynamics\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Mawson\"],\"firstnames\":[\"Eleanor\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lee\"],\"firstnames\":[\"Katherine\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"journal\":\"Journal of Geophysical Research, C: Oceans\",\"publisher\":\"American Geophysical Union (AGU)\",\"year\":\"2022\",\"language\":\"en\",\"issn\":\"2169-9275, 2169-9291\",\"doi\":\"10.1029/2021jc017823\",\"bibtex\":\"@ARTICLE{Mawson2022-ni,\\n  title     = \\\"{Sea level rise and the Great Barrier Reef the future\\n               implications on reef tidal dynamics}\\\",\\n  author    = \\\"Mawson, Eleanor E and Lee, Katherine C and Hill, Jon\\\",\\n  journal   = \\\"Journal of Geophysical Research, C: Oceans\\\",\\n  publisher = \\\"American Geophysical Union (AGU)\\\",\\n  year      =  2022,\\n  language  = \\\"en\\\",\\n  issn      = \\\"2169-9275, 2169-9291\\\",\\n  doi       = \\\"10.1029/2021jc017823\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Mawson, E. E\",\"Lee, K. C\",\"Hill, J.\"],\"key\":\"Mawson2022-ni\",\"id\":\"Mawson2022-ni\",\"bibbaseid\":\"mawson-lee-hill-sealevelriseandthegreatbarrierreefthefutureimplicationsonreeftidaldynamics-2022\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":1,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling\",\"journal\":\"Earth-Science Reviews\",\"volume\":\"223\",\"pages\":\"103827\",\"year\":\"2021\",\"issn\":\"0012-8252\",\"doi\":\"https://doi.org/10.1016/j.earscirev.2021.103827\",\"url\":\"https://www.sciencedirect.com/science/article/pii/S0012825221003287\",\"author\":[{\"firstnames\":[\"Daniel\",\"S.\"],\"propositions\":[],\"lastnames\":[\"Collins\"],\"suffixes\":[]},{\"firstnames\":[\"Alexandros\"],\"propositions\":[],\"lastnames\":[\"Avdis\"],\"suffixes\":[]},{\"firstnames\":[\"Martin\",\"R.\"],\"propositions\":[],\"lastnames\":[\"Wells\"],\"suffixes\":[]},{\"firstnames\":[\"Christopher\",\"D.\"],\"propositions\":[],\"lastnames\":[\"Dean\"],\"suffixes\":[]},{\"firstnames\":[\"Andrew\",\"J.\"],\"propositions\":[],\"lastnames\":[\"Mitchell\"],\"suffixes\":[]},{\"firstnames\":[\"Peter\",\"A.\"],\"propositions\":[],\"lastnames\":[\"Allison\"],\"suffixes\":[]},{\"firstnames\":[\"Howard\",\"D.\"],\"propositions\":[],\"lastnames\":[\"Johnson\"],\"suffixes\":[]},{\"firstnames\":[\"Gary\",\"J.\"],\"propositions\":[],\"lastnames\":[\"Hampson\"],\"suffixes\":[]},{\"firstnames\":[\"Jon\"],\"propositions\":[],\"lastnames\":[\"Hill\"],\"suffixes\":[]},{\"firstnames\":[\"Matthew\",\"D.\"],\"propositions\":[],\"lastnames\":[\"Piggott\"],\"suffixes\":[]}],\"keywords\":\"Shoreline, Shelf, Delta, Wave, Tide, Fluvial, Process regime, Numerical modelling, Palaeotidal\",\"bibtex\":\"@article{COLLINS2021103827,\\ntitle = {Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling},\\njournal = {Earth-Science Reviews},\\nvolume = {223},\\npages = {103827},\\nyear = {2021},\\nissn = {0012-8252},\\ndoi = {https://doi.org/10.1016/j.earscirev.2021.103827},\\nurl = {https://www.sciencedirect.com/science/article/pii/S0012825221003287},\\nauthor = {Daniel S. Collins and Alexandros Avdis and Martin R. Wells and Christopher D. Dean and Andrew J. Mitchell and Peter A. Allison and Howard D. Johnson and Gary J. Hampson and Jon Hill and Matthew D. Piggott},\\nkeywords = {Shoreline, Shelf, Delta, Wave, Tide, Fluvial, Process regime, Numerical modelling, Palaeotidal},\\n\\n}\\n\",\"author_short\":[\"Collins, D. S.\",\"Avdis, A.\",\"Wells, M. R.\",\"Dean, C. D.\",\"Mitchell, A. J.\",\"Allison, P. A.\",\"Johnson, H. D.\",\"Hampson, G. J.\",\"Hill, J.\",\"Piggott, M. D.\"],\"key\":\"COLLINS2021103827\",\"id\":\"COLLINS2021103827\",\"bibbaseid\":\"collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021\",\"role\":\"author\",\"urls\":{\"Paper\":\"https://www.sciencedirect.com/science/article/pii/S0012825221003287\"},\"keyword\":[\"Shoreline\",\"Shelf\",\"Delta\",\"Wave\",\"Tide\",\"Fluvial\",\"Process regime\",\"Numerical modelling\",\"Palaeotidal\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":1,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Detailing the impact of the Storegga Tsunami at Montrose, Scotland\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Bateman\"],\"firstnames\":[\"Mark\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kinnaird\"],\"firstnames\":[\"Tim\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ashurst\"],\"firstnames\":[\"Robert\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mohan\"],\"firstnames\":[\"Jenna\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bateman\"],\"firstnames\":[\"Rebecca\",\"B\",\"I\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Robinson\"],\"firstnames\":[\"Ruth\"],\"suffixes\":[]}],\"journal\":\"Boreas\",\"publisher\":\"Wiley\",\"number\":\"bor.12532\",\"month\":\"June\",\"year\":\"2021\",\"language\":\"en\",\"issn\":\"0300-9483, 1502-3885\",\"doi\":\"10.1111/bor.12532\",\"bibtex\":\"@ARTICLE{Bateman2021-mj,\\n  title     = \\\"{Detailing the impact of the Storegga Tsunami at Montrose,\\n               Scotland}\\\",\\n  author    = \\\"Bateman, Mark D and Kinnaird, Tim C and Hill, Jon and Ashurst,\\n               Robert A and Mohan, Jenna and Bateman, Rebecca B I and Robinson,\\n               Ruth\\\",\\n  journal   = \\\"Boreas\\\",\\n  publisher = \\\"Wiley\\\",\\n  number    = \\\"bor.12532\\\",\\n  month     =  jun,\\n  year      =  2021,\\n  language  = \\\"en\\\",\\n  issn      = \\\"0300-9483, 1502-3885\\\",\\n  doi       = \\\"10.1111/bor.12532\\\"\\n}\\n\\n\",\"author_short\":[\"Bateman, M. D\",\"Kinnaird, T. C\",\"Hill, J.\",\"Ashurst, R. A\",\"Mohan, J.\",\"Bateman, R. B I\",\"Robinson, R.\"],\"key\":\"Bateman2021-mj\",\"id\":\"Bateman2021-mj\",\"bibbaseid\":\"bateman-kinnaird-hill-ashurst-mohan-bateman-robinson-detailingtheimpactofthestoreggatsunamiatmontrosescotland-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":1,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Morphodynamic Controls for Growth and Evolution of a Rubble Coral Island\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Talavera\"],\"firstnames\":[\"Lara\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Vila-Concejo\"],\"firstnames\":[\"Ana\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Webster\"],\"firstnames\":[\"Jody\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Smith\"],\"firstnames\":[\"Courtney\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Duce\"],\"firstnames\":[\"Stephanie\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Fellowes\"],\"firstnames\":[\"Thomas\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Salles\"],\"firstnames\":[\"Tristan\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Harris\"],\"firstnames\":[\"Daniel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Figueira\"],\"firstnames\":[\"Will\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hacker\"],\"firstnames\":[\"Jörg\"],\"suffixes\":[]}],\"journal\":\"Remote Sensing\",\"publisher\":\"Multidisciplinary Digital Publishing Institute\",\"volume\":\"13\",\"number\":\"8\",\"pages\":\"1582\",\"month\":\"April\",\"year\":\"2021\",\"language\":\"en\",\"doi\":\"10.3390/rs13081582\",\"bibtex\":\"@ARTICLE{Talavera2021-lw,\\n  title     = \\\"{Morphodynamic Controls for Growth and Evolution of a Rubble\\n               Coral Island}\\\",\\n  author    = \\\"Talavera, Lara and Vila-Concejo, Ana and Webster, Jody M and\\n               Smith, Courtney and Duce, Stephanie and Fellowes, Thomas E and\\n               Salles, Tristan and Harris, Daniel and Hill, Jon and Figueira,\\n               Will and Hacker, J{\\\\\\\"o}rg\\\",\\n  journal   = \\\"Remote Sensing\\\",\\n  publisher = \\\"Multidisciplinary Digital Publishing Institute\\\",\\n  volume    =  13,\\n  number    =  8,\\n  pages     = \\\"1582\\\",\\n  month     =  apr,\\n  year      =  2021,\\n  language  = \\\"en\\\",\\n  doi       = \\\"10.3390/rs13081582\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Talavera, L.\",\"Vila-Concejo, A.\",\"Webster, J. M\",\"Smith, C.\",\"Duce, S.\",\"Fellowes, T. E\",\"Salles, T.\",\"Harris, D.\",\"Hill, J.\",\"Figueira, W.\",\"Hacker, J.\"],\"key\":\"Talavera2021-lw\",\"id\":\"Talavera2021-lw\",\"bibbaseid\":\"talavera-vilaconcejo-webster-smith-duce-fellowes-salles-harris-etal-morphodynamiccontrolsforgrowthandevolutionofarubblecoralisland-2021\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"A new methodology for performing large scale simulations of tsunami generated by deformable submarine slides\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Smith\"],\"firstnames\":[\"Rebecca\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mouradian\"],\"firstnames\":[\"Simon\",\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Collins\"],\"firstnames\":[\"Gareth\",\"S\"],\"suffixes\":[]}],\"journal\":\"Ocean Modelling\",\"pages\":\"101674\",\"month\":\"July\",\"year\":\"2020\",\"keywords\":\"Submarine slide; Tsunami; Numerical modelling; Landslides\",\"issn\":\"1463-5003\",\"doi\":\"10.1016/j.ocemod.2020.101674\",\"bibtex\":\"@ARTICLE{Smith2020-om,\\n  title    = \\\"{A new methodology for performing large scale simulations of\\n              tsunami generated by deformable submarine slides}\\\",\\n  author   = \\\"Smith, Rebecca C and Hill, Jon and Mouradian, Simon L and\\n              Piggott, Matthew D and Collins, Gareth S\\\",\\n  journal  = \\\"Ocean Modelling\\\",\\n  pages    = \\\"101674\\\",\\n  month    =  jul,\\n  year     =  2020,\\n  keywords = \\\"Submarine slide; Tsunami; Numerical modelling; Landslides\\\",\\n  issn     = \\\"1463-5003\\\",\\n  doi      = \\\"10.1016/j.ocemod.2020.101674\\\"\\n}\\n\\n\",\"author_short\":[\"Smith, R. C\",\"Hill, J.\",\"Mouradian, S. L\",\"Piggott, M. D\",\"Collins, G. S\"],\"key\":\"Smith2020-om\",\"id\":\"Smith2020-om\",\"bibbaseid\":\"smith-hill-mouradian-piggott-collins-anewmethodologyforperforminglargescalesimulationsoftsunamigeneratedbydeformablesubmarineslides-2020\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Submarine slide; Tsunami; Numerical modelling; Landslides\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":1,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Modelling the impact of tidal range energy on species communities\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Baker\"],\"firstnames\":[\"Amy\",\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Craighead\"],\"firstnames\":[\"Robert\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Jarvis\"],\"firstnames\":[\"Emma\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Stenton\"],\"firstnames\":[\"Harriett\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Angeloudis\"],\"firstnames\":[\"Athanasios\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mackie\"],\"firstnames\":[\"Lucas\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"Alexandros\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"journal\":\"Ocean & coastal management\",\"volume\":\"193\",\"pages\":\"105221\",\"month\":\"August\",\"year\":\"2020\",\"keywords\":\"Tidal energy; Environmental impacts; Modelling\",\"issn\":\"0964-5691\",\"doi\":\"10.1016/j.ocecoaman.2020.105221\",\"bibtex\":\"@ARTICLE{Baker2020-ci,\\n  title    = \\\"{Modelling the impact of tidal range energy on species communities}\\\",\\n  author   = \\\"Baker, Amy L and Craighead, Robert M and Jarvis, Emma J and\\n              Stenton, Harriett C and Angeloudis, Athanasios and Mackie, Lucas\\n              and Avdis, Alexandros and Piggott, Matthew D and Hill, Jon\\\",\\n  journal  = \\\"Ocean \\\\& coastal management\\\",\\n  volume   =  193,\\n  pages    = \\\"105221\\\",\\n  month    =  aug,\\n  year     =  2020,\\n  keywords = \\\"Tidal energy; Environmental impacts; Modelling\\\",\\n  issn     = \\\"0964-5691\\\",\\n  doi      = \\\"10.1016/j.ocecoaman.2020.105221\\\"\\n}\\n\\n\\n\\n\",\"author_short\":[\"Baker, A. L\",\"Craighead, R. M\",\"Jarvis, E. J\",\"Stenton, H. C\",\"Angeloudis, A.\",\"Mackie, L.\",\"Avdis, A.\",\"Piggott, M. D\",\"Hill, J.\"],\"key\":\"Baker2020-ci\",\"id\":\"Baker2020-ci\",\"bibbaseid\":\"baker-craighead-jarvis-stenton-angeloudis-mackie-avdis-piggott-etal-modellingtheimpactoftidalrangeenergyonspeciescommunities-2020\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Tidal energy; Environmental impacts; Modelling\"],\"metadata\":{\"authorlinks\":{\"angeloudis, a\":\"https://thangel.github.io/publications.html\"}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Aragonite bias exhibits systematic spatial variation in the Late Cretaceous Western Interior Seaway, North America\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Dean\"],\"firstnames\":[\"Christopher\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"Peter\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hampson\"],\"firstnames\":[\"Gary\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"journal\":\"Paleobiology\",\"publisher\":\"Cambridge University Press\",\"volume\":\"45\",\"number\":\"4\",\"pages\":\"571–597\",\"month\":\"September\",\"year\":\"2019\",\"issn\":\"0094-8373, 1938-5331\",\"doi\":\"10.1017/pab.2019.33\",\"bibtex\":\"@ARTICLE{Dean2019-bp,\\n  title     = \\\"{Aragonite bias exhibits systematic spatial variation in the Late\\n               Cretaceous Western Interior Seaway, North America}\\\",\\n  author    = \\\"Dean, Christopher D and Allison, Peter A and Hampson, Gary J and\\n               Hill, Jon\\\",\\n  journal   = \\\"Paleobiology\\\",\\n  publisher = \\\"Cambridge University Press\\\",\\n  volume    =  45,\\n  number    =  4,\\n  pages     = \\\"571--597\\\",\\n  month     =  sep,\\n  year      =  2019,\\n  issn      = \\\"0094-8373, 1938-5331\\\",\\n  doi       = \\\"10.1017/pab.2019.33\\\"\\n}\\n\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"Dean, C. D\",\"Allison, P. A\",\"Hampson, G. J\",\"Hill, J.\"],\"key\":\"Dean2019-bp\",\"id\":\"Dean2019-bp\",\"bibbaseid\":\"dean-allison-hampson-hill-aragonitebiasexhibitssystematicspatialvariationinthelatecretaceouswesterninteriorseawaynorthamerica-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Reconciling Storegga tsunami sedimentation patterns with modelled wave heights: A discussion from the Shetland Isles field laboratory\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Dawson\"],\"firstnames\":[\"Alastair\",\"G\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dawson\"],\"firstnames\":[\"Sue\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Bondevik\"],\"firstnames\":[\"Stein\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Costa\"],\"firstnames\":[\"Pedro\",\"J\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Stewart\"],\"firstnames\":[\"Iain\"],\"suffixes\":[]}],\"journal\":\"Sedimentology\",\"month\":\"June\",\"year\":\"2020\",\"issn\":\"0037-0746\",\"doi\":\"10.1111/sed.12643\",\"bibtex\":\"@ARTICLE{Dawson2019-db,\\n  title    = \\\"{Reconciling Storegga tsunami sedimentation patterns with modelled\\n              wave heights: A discussion from the Shetland Isles field\\n              laboratory}\\\",\\n  author   = \\\"Dawson, Alastair G and Dawson, Sue and Bondevik, Stein and Costa,\\n              Pedro J M and Hill, Jon and Stewart, Iain\\\",\\n  journal  = \\\"Sedimentology\\\",\\n  month    =  jun,\\n  year     =  2020,\\n  issn     = \\\"0037-0746\\\",\\n  doi      = \\\"10.1111/sed.12643\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Dawson, A. G\",\"Dawson, S.\",\"Bondevik, S.\",\"Costa, P. J M\",\"Hill, J.\",\"Stewart, I.\"],\"key\":\"Dawson2019-db\",\"id\":\"Dawson2019-db\",\"bibbaseid\":\"dawson-dawson-bondevik-costa-hill-stewart-reconcilingstoreggatsunamisedimentationpatternswithmodelledwaveheightsadiscussionfromtheshetlandislesfieldlaboratory-2020\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":1,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"HRDS: A Python package for hierarchical raster datasets\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"abstract\":\"Software archive\",\"journal\":\"Journal of Open Source Software\",\"volume\":\"4\",\"number\":\"37\",\"pages\":\"1112\",\"month\":\"May\",\"year\":\"2019\",\"issn\":\"2475-9066\",\"doi\":\"10.21105/joss.01112\",\"bibtex\":\"@ARTICLE{Hill2019-nq,\\n  title    = \\\"{HRDS: A Python package for hierarchical raster datasets}\\\",\\n  author   = \\\"Hill, Jon\\\",\\n  abstract = \\\"Software archive\\\",\\n  journal  = \\\"Journal of Open Source Software\\\",\\n  volume   =  4,\\n  number   =  37,\\n  pages    = \\\"1112\\\",\\n  month    =  may,\\n  year     =  2019,\\n  issn     = \\\"2475-9066\\\",\\n  doi      = \\\"10.21105/joss.01112\\\"\\n}\\n\\n\\n\",\"author_short\":[\"Hill, J.\"],\"key\":\"Hill2019-nq\",\"id\":\"Hill2019-nq\",\"bibbaseid\":\"hill-hrdsapythonpackageforhierarchicalrasterdatasets-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"author\":[{\"propositions\":[\"du\"],\"lastnames\":[\"Feu\"],\"firstnames\":[\"R.\",\"J.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Funke\"],\"firstnames\":[\"S.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"S.\",\"C.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M.\",\"D.\"],\"suffixes\":[]}],\"title\":\"The trade-off between tidal-turbine array yield and environmental impact: a maximum entropy modelling approach\",\"journal\":\"Renewable Energy\",\"year\":\"2019\",\"bibtex\":\"@article{dufeu_2019,\\nauthor = {du Feu, R. J. and Funke, S. and Kramer, S. C. and Hill, J. and Piggott, M. D.},\\ntitle = {The trade-off between tidal-turbine array yield and environmental impact: a maximum entropy modelling approach},\\njournal = {Renewable Energy},\\nyear = {2019}\\n}\\n\\n\",\"author_short\":[\"du Feu, R. J.\",\"Funke, S.\",\"Kramer, S. C.\",\"Hill, J.\",\"Piggott, M. D.\"],\"key\":\"dufeu_2019\",\"id\":\"dufeu_2019\",\"bibbaseid\":\"dufeu-funke-kramer-hill-piggott-thetradeoffbetweentidalturbinearrayyieldandenvironmentalimpactamaximumentropymodellingapproach-2019\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Collins\"],\"firstnames\":[\"Daniel\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"Alexandros\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"Peter\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Johnson\"],\"firstnames\":[\"Howard\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]}],\"title\":\"Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia\",\"journal\":\"Sedimentology\",\"volume\":\"0\",\"year\":\"2018\",\"keywords\":\"Embayments, numerical modelling, Oligocene–Miocene, preservation, shoreline–shelf, South China Sea, tidal amplification, tides\",\"doi\":\"10.1111/sed.12474\",\"url\":\"https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474\",\"eprint\":\"https://onlinelibrary.wiley.com/doi/pdf/10.1111/sed.12474\",\"abstract\":\"Abstract Numerical tidal modelling, when integrated with other geological datasets, can significantly inform the analysis of physical sedimentation processes and the depositional and preservational record of ancient tide-influenced shoreline–shelf systems. This is illustrated in the Oligo–Miocene of the South China Sea, which experienced significant changes in basin physiography and where tide-influenced, shoreline–shelf deposition is preserved in ca 10 sub-basins. Palaeogeographic reconstructions, palaeotidal modelling and regional sedimentary facies analysis have been integrated in order to evaluate the spatial–temporal evolution and physiographic controls on tidal sedimentation and preservation during the ca 25 Myr Oligo–Miocene record in the South China Sea. Palaeotidal modelling, using an astronomically-forced and global tidal model (Fluidity) at a maximum 10 km resolution, indicates that spring tides along Late Oligocene to Middle Miocene coastlines were predominantly mesotidal–macrotidal and capable of transporting sand, which reflects two main conditions: (i) increased tidal inflow through wider ocean connections to the Pacific Ocean; and (ii) tidal amplification resulting from constriction of the tidal wave in a ‘blind gulf’ type of basin morphology. Since the Middle to Late Miocene, a reduction in the amplitude and strength of tides in the South China Sea was mainly due to diminishing tidal inflow from the Pacific Ocean caused by the northward movement of the Philippines and Izu–Bonin–Mariana arc. Sensitivity tests to palaeogeographic and palaeobathymetric uncertainty indicate that regional-scale (hundreds to thousands of kilometres) palaeogeographic changes influencing tidal inflow versus outflow can override local-scale (one to hundreds of kilometres) changes to tidal resonance and convergence effects (funnelling and shoaling), such as shelf width and shoreline geometry. Palaeotidal model results compare favourably to the distribution and sedimentary fabric of Oligo–Miocene, tide-influenced, shoreline–shelf successions in peripheral South China Sea basins. However, the preservation potential of tidal deposits is lower in open coastline environments, probably due to enhanced reworking during storms and river floods. This article is protected by copyright. All rights reserved.\",\"bibtex\":\"@article{collins_2018,\\nauthor = {Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and Johnson, Howard D and Hill, Jon and Piggott, Matthew D},\\ntitle = {Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia},\\njournal = {Sedimentology},\\nvolume = {0},\\nyear = {2018},\\nkeywords = {Embayments, numerical modelling, Oligocene–Miocene, preservation, shoreline–shelf, South China Sea, tidal amplification, tides},\\ndoi = {10.1111/sed.12474},\\nurl = {https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474},\\neprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/sed.12474},\\nabstract = {Abstract Numerical tidal modelling, when integrated with other geological datasets, can significantly inform the analysis of physical sedimentation processes and the depositional and preservational record of ancient tide-influenced shoreline–shelf systems. This is illustrated in the Oligo–Miocene of the South China Sea, which experienced significant changes in basin physiography and where tide-influenced, shoreline–shelf deposition is preserved in ca 10 sub-basins. Palaeogeographic reconstructions, palaeotidal modelling and regional sedimentary facies analysis have been integrated in order to evaluate the spatial–temporal evolution and physiographic controls on tidal sedimentation and preservation during the ca 25 Myr Oligo–Miocene record in the South China Sea. Palaeotidal modelling, using an astronomically-forced and global tidal model (Fluidity) at a maximum 10 km resolution, indicates that spring tides along Late Oligocene to Middle Miocene coastlines were predominantly mesotidal–macrotidal and capable of transporting sand, which reflects two main conditions: (i) increased tidal inflow through wider ocean connections to the Pacific Ocean; and (ii) tidal amplification resulting from constriction of the tidal wave in a ‘blind gulf’ type of basin morphology. Since the Middle to Late Miocene, a reduction in the amplitude and strength of tides in the South China Sea was mainly due to diminishing tidal inflow from the Pacific Ocean caused by the northward movement of the Philippines and Izu–Bonin–Mariana arc. Sensitivity tests to palaeogeographic and palaeobathymetric uncertainty indicate that regional-scale (hundreds to thousands of kilometres) palaeogeographic changes influencing tidal inflow versus outflow can override local-scale (one to hundreds of kilometres) changes to tidal resonance and convergence effects (funnelling and shoaling), such as shelf width and shoreline geometry. Palaeotidal model results compare favourably to the distribution and sedimentary fabric of Oligo–Miocene, tide-influenced, shoreline–shelf successions in peripheral South China Sea basins. However, the preservation potential of tidal deposits is lower in open coastline environments, probably due to enhanced reworking during storms and river floods. This article is protected by copyright. All rights reserved.}\\n}\\n\\n\",\"author_short\":[\"Collins, D. S\",\"Avdis, A.\",\"Allison, P. A\",\"Johnson, H. D\",\"Hill, J.\",\"Piggott, M. D\"],\"key\":\"collins_2018\",\"id\":\"collins_2018\",\"bibbaseid\":\"collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018\",\"role\":\"author\",\"urls\":{\"Paper\":\"https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474\"},\"keyword\":[\"Embayments\",\"numerical modelling\",\"Oligocene–Miocene\",\"preservation\",\"shoreline–shelf\",\"South China Sea\",\"tidal amplification\",\"tides\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Efficient unstructured mesh generation for marine renewable energy applications\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"Alexandros\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Candy\"],\"firstnames\":[\"Adam\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"Stephan\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]}],\"abstract\":\"Abstract Renewable energy is the cornerstone of preventing dangerous climate change whilst maintaining a robust energy supply. Tidal energy will arguably play a critical role in the renewable energy portfolio as it is both predictable and reliable, and can be put in place across the globe. However, installation may impact the local and regional ecology via changes in tidal dynamics, sediment transport pathways or bathymetric changes. In order to mitigate these effects, tidal energy devices need to be modelled in order to predict hydrodynamic changes. Robust mesh generation is a fundamental component required for developing simulations with high accuracy. However, mesh generation for coastal domains can be an elaborate procedure. Here, we describe an approach combining mesh generators with Geographical Information Systems. We demonstrate robustness and efficiency by constructing a mesh with which to examine the potential environmental impact of a tidal turbine farm installation in the Orkney Islands. The mesh is then used with two well-validated ocean models, to compare their flow predictions with and without a turbine array. The results demonstrate that it is possible to create an easy-to-use tool to generate high-quality meshes for combined coastal engineering, here tidal turbines, and coastal ocean simulations.\",\"journal\":\"Renewable Energy\",\"month\":\"September\",\"year\":\"2017\",\"keywords\":\"Mesh generation; Geographical Information Systems; Research Data Management; Tidal turbine arrays; Renewable energy generation; Pentland Firth\",\"issn\":\"0960-1481\",\"doi\":\"10.1016/j.renene.2017.09.058\",\"bibtex\":\"@ARTICLE{Avdis2017-dv,\\n  title    = \\\"{Efficient unstructured mesh generation for marine renewable\\n              energy applications}\\\",\\n  author   = \\\"Avdis, Alexandros and Candy, Adam S and Hill, Jon and Kramer,\\n              Stephan C and Piggott, Matthew D\\\",\\n  abstract = \\\"Abstract Renewable energy is the cornerstone of preventing\\n              dangerous climate change whilst maintaining a robust energy\\n              supply. Tidal energy will arguably play a critical role in the\\n              renewable energy portfolio as it is both predictable and\\n              reliable, and can be put in place across the globe. However,\\n              installation may impact the local and regional ecology via\\n              changes in tidal dynamics, sediment transport pathways or\\n              bathymetric changes. In order to mitigate these effects, tidal\\n              energy devices need to be modelled in order to predict\\n              hydrodynamic changes. Robust mesh generation is a fundamental\\n              component required for developing simulations with high accuracy.\\n              However, mesh generation for coastal domains can be an elaborate\\n              procedure. Here, we describe an approach combining mesh\\n              generators with Geographical Information Systems. We demonstrate\\n              robustness and efficiency by constructing a mesh with which to\\n              examine the potential environmental impact of a tidal turbine\\n              farm installation in the Orkney Islands. The mesh is then used\\n              with two well-validated ocean models, to compare their flow\\n              predictions with and without a turbine array. The results\\n              demonstrate that it is possible to create an easy-to-use tool to\\n              generate high-quality meshes for combined coastal engineering,\\n              here tidal turbines, and coastal ocean simulations.\\\",\\n  journal  = \\\"Renewable Energy\\\",\\n  month    =  sep,\\n  year     =  2017,\\n  keywords = \\\"Mesh generation; Geographical Information Systems; Research Data\\n              Management; Tidal turbine arrays; Renewable energy generation;\\n              Pentland Firth\\\",\\n  issn     = \\\"0960-1481\\\",\\n  doi      = \\\"10.1016/j.renene.2017.09.058\\\"\\n}\\n\\n\",\"author_short\":[\"Avdis, A.\",\"Candy, A. S\",\"Hill, J.\",\"Kramer, S. C\",\"Piggott, M. D\"],\"key\":\"Avdis2017-dv\",\"id\":\"Avdis2017-dv\",\"bibbaseid\":\"avdis-candy-hill-kramer-piggott-efficientunstructuredmeshgenerationformarinerenewableenergyapplications-2017\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Mesh generation; Geographical Information Systems; Research Data Management; Tidal turbine arrays; Renewable energy generation; Pentland Firth\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"The trade-off between tidal-turbine array yield and impact on flow: A multi-objective optimisation problem\",\"author\":[{\"propositions\":[\"du\"],\"lastnames\":[\"Feu\"],\"firstnames\":[\"R\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Funke\"],\"firstnames\":[\"S\",\"W\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"S\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Culley\"],\"firstnames\":[\"D\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Halpern\"],\"firstnames\":[\"B\",\"S\"],\"suffixes\":[]},{\"firstnames\":[],\"propositions\":[],\"lastnames\":[\"Piggott\"],\"suffixes\":[]}],\"abstract\":\"This paper introduces a new approach for investigating trade-offs between different societal objectives in the design of tidal-turbine arrays. This method is demonstrated through the trade-off between the yield of an array, and the extent to which that array alters the flow. This is posed as a multi-objective optimisation problem, and the problem is investigated using the array layout optimisation tool OpenTidalFarm. Motivated by environmental concerns, OpenTidalFarm is adapted to not only maximise array yield but also to minimise the effect of the array upon the hydrodynamics of the region, specifically the flow velocity. A linear scalarisation of the multi-objective optimisation problem is solved for a series of different weightings of the two conflicting objectives. Two idealised test scenarios are evaluated and in each case a set of Pareto solutions is found. These arrays are assessed for the power they generate and the severity of change they cause in the flow velocity. These analyses allow for the identification of trade-offs between these two objectives, while the methods proposed can similarly be applied to the two key societal objectives of energy production and conservation, thus providing information that could be valuable to stakeholders and policymakers when making decisions on array design.\",\"journal\":\"Renewable Energy\",\"volume\":\"114\",\"pages\":\"1247–1257\",\"month\":\"December\",\"year\":\"2017\",\"keywords\":\"Marine renewable energy; Tidal turbines; Gradient-based optimisation; Multi-objective optimization; Pareto front; Environmental impact\",\"issn\":\"0960-1481\",\"doi\":\"10.1016/j.renene.2017.07.081\",\"bibtex\":\"@ARTICLE{Du_Feu2017-ra,\\n  title    = \\\"{The trade-off between tidal-turbine array yield and impact on\\n              flow: A multi-objective optimisation problem}\\\",\\n  author   = \\\"du Feu, R J and Funke, S W and Kramer, S C and Culley, D M and\\n              Hill, J and Halpern, B S and {Piggott}\\\",\\n  abstract = \\\"This paper introduces a new approach for investigating trade-offs\\n              between different societal objectives in the design of\\n              tidal-turbine arrays. This method is demonstrated through the\\n              trade-off between the yield of an array, and the extent to which\\n              that array alters the flow. This is posed as a multi-objective\\n              optimisation problem, and the problem is investigated using the\\n              array layout optimisation tool OpenTidalFarm. Motivated by\\n              environmental concerns, OpenTidalFarm is adapted to not only\\n              maximise array yield but also to minimise the effect of the array\\n              upon the hydrodynamics of the region, specifically the flow\\n              velocity. A linear scalarisation of the multi-objective\\n              optimisation problem is solved for a series of different\\n              weightings of the two conflicting objectives. Two idealised test\\n              scenarios are evaluated and in each case a set of Pareto\\n              solutions is found. These arrays are assessed for the power they\\n              generate and the severity of change they cause in the flow\\n              velocity. These analyses allow for the identification of\\n              trade-offs between these two objectives, while the methods\\n              proposed can similarly be applied to the two key societal\\n              objectives of energy production and conservation, thus providing\\n              information that could be valuable to stakeholders and\\n              policymakers when making decisions on array design.\\\",\\n  journal  = \\\"Renewable Energy\\\",\\n  volume   =  114,\\n  pages    = \\\"1247--1257\\\",\\n  month    =  dec,\\n  year     =  2017,\\n  keywords = \\\"Marine renewable energy; Tidal turbines; Gradient-based\\n              optimisation; Multi-objective optimization; Pareto front;\\n              Environmental impact\\\",\\n  issn     = \\\"0960-1481\\\",\\n  doi      = \\\"10.1016/j.renene.2017.07.081\\\"\\n}\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"du Feu, R J\",\"Funke, S W\",\"Kramer, S C\",\"Culley, D M\",\"Hill, J\",\"Halpern, B S\",\"Piggott\"],\"key\":\"Du_Feu2017-ra\",\"id\":\"Du_Feu2017-ra\",\"bibbaseid\":\"dufeu-funke-kramer-culley-hill-halpern-piggott-thetradeoffbetweentidalturbinearrayyieldandimpactonflowamultiobjectiveoptimisationproblem-2017\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Marine renewable energy; Tidal turbines; Gradient-based optimisation; Multi-objective optimization; Pareto front; Environmental impact\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Tidal dynamics and mangrove carbon sequestration during the Oligo–Miocene in the South China Sea\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Collins\"],\"firstnames\":[\"Daniel\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"Alexandros\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"Peter\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Johnson\"],\"firstnames\":[\"Howard\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Amir\",\"Hassan\"],\"firstnames\":[\"Meor\",\"H\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Damit\"],\"firstnames\":[\"Abdul\",\"Razak\"],\"suffixes\":[]}],\"abstract\":\"Mangroves are important carbon-rich biomes, but their long-term impact on the global carbon cycle is relatively unknown. Here, the authors show that the Oligo–Miocene mangroves in the South China Sea stored in excess of 4,000 Gt, demonstrating the long-term impact of mang…\",\"journal\":\"Nature communications\",\"publisher\":\"Nature Publishing Group\",\"volume\":\"8\",\"pages\":\"ncomms15698\",\"month\":\"June\",\"year\":\"2017\",\"language\":\"en\",\"issn\":\"2041-1723, 2041-1723\",\"doi\":\"10.1038/ncomms15698\",\"bibtex\":\"@ARTICLE{Collins2017-vs,\\n  title     = \\\"{Tidal dynamics and mangrove carbon sequestration during the\\n               Oligo--Miocene in the South China Sea}\\\",\\n  author    = \\\"Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and\\n               Johnson, Howard D and Hill, Jon and Piggott, Matthew D and Amir\\n               Hassan, Meor H and Damit, Abdul Razak\\\",\\n  abstract  = \\\"Mangroves are important carbon-rich biomes, but their long-term\\n               impact on the global carbon cycle is relatively unknown. Here,\\n               the authors show that the Oligo--Miocene mangroves in the South\\n               China Sea stored in excess of 4,000 Gt, demonstrating the\\n               long-term impact of mang…\\\",\\n  journal   = \\\"Nature communications\\\",\\n  publisher = \\\"Nature Publishing Group\\\",\\n  volume    =  8,\\n  pages     = \\\"ncomms15698\\\",\\n  month     =  jun,\\n  year      =  2017,\\n  language  = \\\"en\\\",\\n  issn      = \\\"2041-1723, 2041-1723\\\",\\n  doi       = \\\"10.1038/ncomms15698\\\"\\n}\\n\\n\",\"author_short\":[\"Collins, D. S\",\"Avdis, A.\",\"Allison, P. A\",\"Johnson, H. D\",\"Hill, J.\",\"Piggott, M. D\",\"Amir Hassan, M. H\",\"Damit, A. R.\"],\"key\":\"Collins2017-vs\",\"id\":\"Collins2017-vs\",\"bibbaseid\":\"collins-avdis-allison-johnson-hill-piggott-amirhassan-damit-tidaldynamicsandmangrovecarbonsequestrationduringtheoligomioceneinthesouthchinasea-2017\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Global cooling as a driver of diversification in a major marine clade\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Davis\"],\"firstnames\":[\"Katie\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Astrop\"],\"firstnames\":[\"Tim\",\"I\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wills\"],\"firstnames\":[\"Matthew\",\"A\"],\"suffixes\":[]}],\"affiliation\":\"Milner Centre for Evolution, Department of Biology and Biochemistry, The University of Bath, Bath BA2 7AY, UK. Environment Department, University of York, York YO10 5NG, UK. Milner Centre for Evolution, Department of Biology and Biochemistry, The University of Bath, Bath BA2 7AY, UK. Milner Centre for Evolution, Department of Biology and Biochemistry, The University of Bath, Bath BA2 7AY, UK.\",\"abstract\":\"Climate is a strong driver of global diversity and will become increasingly important as human influences drive temperature changes at unprecedented rates. Here we investigate diversification and speciation trends within a diverse group of aquatic crustaceans, the Anomura. We use a phylogenetic framework to demonstrate that speciation rate is correlated with global cooling across the entire tree, in contrast to previous studies. Additionally, we find that marine clades continue to show evidence of increased speciation rates with cooler global temperatures, while the single freshwater clade shows the opposite trend with speciation rates positively correlated to global warming. Our findings suggest that both global cooling and warming lead to diversification and that habitat plays a role in the responses of species to climate change. These results have important implications for our understanding of how extant biota respond to ongoing climate change and are of particular importance for conservation planning of marine ecosystems.\",\"journal\":\"Nature communications\",\"volume\":\"7\",\"pages\":\"13003\",\"month\":\"October\",\"year\":\"2016\",\"language\":\"en\",\"issn\":\"2041-1723\",\"pmid\":\"27701377\",\"doi\":\"10.1038/ncomms13003\",\"pmc\":\"PMC5059450\",\"bibtex\":\"@ARTICLE{Davis2016-ah,\\n  title       = \\\"{Global cooling as a driver of diversification in a major\\n                 marine clade}\\\",\\n  author      = \\\"Davis, Katie E and Hill, Jon and Astrop, Tim I and Wills,\\n                 Matthew A\\\",\\n  affiliation = \\\"Milner Centre for Evolution, Department of Biology and\\n                 Biochemistry, The University of Bath, Bath BA2 7AY, UK.\\n                 Environment Department, University of York, York YO10 5NG, UK.\\n                 Milner Centre for Evolution, Department of Biology and\\n                 Biochemistry, The University of Bath, Bath BA2 7AY, UK. Milner\\n                 Centre for Evolution, Department of Biology and Biochemistry,\\n                 The University of Bath, Bath BA2 7AY, UK.\\\",\\n  abstract    = \\\"Climate is a strong driver of global diversity and will become\\n                 increasingly important as human influences drive temperature\\n                 changes at unprecedented rates. Here we investigate\\n                 diversification and speciation trends within a diverse group\\n                 of aquatic crustaceans, the Anomura. We use a phylogenetic\\n                 framework to demonstrate that speciation rate is correlated\\n                 with global cooling across the entire tree, in contrast to\\n                 previous studies. Additionally, we find that marine clades\\n                 continue to show evidence of increased speciation rates with\\n                 cooler global temperatures, while the single freshwater clade\\n                 shows the opposite trend with speciation rates positively\\n                 correlated to global warming. Our findings suggest that both\\n                 global cooling and warming lead to diversification and that\\n                 habitat plays a role in the responses of species to climate\\n                 change. These results have important implications for our\\n                 understanding of how extant biota respond to ongoing climate\\n                 change and are of particular importance for conservation\\n                 planning of marine ecosystems.\\\",\\n  journal     = \\\"Nature communications\\\",\\n  volume      =  7,\\n  pages       = \\\"13003\\\",\\n  month       =  oct,\\n  year        =  2016,\\n  language    = \\\"en\\\",\\n  issn        = \\\"2041-1723\\\",\\n  pmid        = \\\"27701377\\\",\\n  doi         = \\\"10.1038/ncomms13003\\\",\\n  pmc         = \\\"PMC5059450\\\"\\n}\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"Davis, K. E\",\"Hill, J.\",\"Astrop, T. I\",\"Wills, M. A\"],\"key\":\"Davis2016-ah\",\"id\":\"Davis2016-ah\",\"bibbaseid\":\"davis-hill-astrop-wills-globalcoolingasadriverofdiversificationinamajormarineclade-2016\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Lateglacial and Holocene relative sea-level changes and first evidence for the Storegga tsunami in Sutherland, Scotland\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Long\"],\"firstnames\":[\"Antony\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Barlow\"],\"firstnames\":[\"Natasha\",\"L\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dawson\"],\"firstnames\":[\"Sue\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Innes\"],\"firstnames\":[\"James\",\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kelham\"],\"firstnames\":[\"Catherine\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Milne\"],\"firstnames\":[\"Fraser\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dawson\"],\"firstnames\":[\"Alastair\"],\"suffixes\":[]}],\"abstract\":\"We reconstruct one of the longest relative sea-level (RSL) records in north-west Europe from the north coast of mainland Scotland, using data collected from three sites in Loch Eriboll (Sutherland) that we combine with other studies from the region. Following deglaciation, RSL fell from a Lateglacial highstand of +6−8 m OD (Ordnance Datum = ca. mean sea level) at ca. 15 k cal a BP to below present, then rose to an early Holocene highstand and remained at ca. +1 m OD between ca. 7 and 3 k cal a BP, before falling to present. We find no evidence for significant differential Holocene glacio-isostatic adjustment between sites on the north-west (Lochinver, Loch Laxford), north (Loch Eriboll) and north-east (Wick) coast of mainland Scotland. This suggests that the region was rapidly deglaciated and there was little difference in ice loads across the region. From one site at the head of Loch Eriboll we report the most westerly sedimentary evidence for the early Holocene Storegga tsunami on the Scottish mainland. The presence of the Storegga tsunami in Loch Eriboll is predicted by a tsunami wave model, which suggests that the tsunami impacted the entire north coast of Scotland and probably also the Atlantic coastline of north-west Scotland.\",\"journal\":\"Journal of Quaternary Science\",\"volume\":\"31\",\"number\":\"3\",\"pages\":\"239–255\",\"month\":\"April\",\"year\":\"2016\",\"keywords\":\"glacio-isostatic adjustment; relative sea level; Storegga landslide; Storegga tsunami; tsunami\",\"issn\":\"1099-1417\",\"doi\":\"10.1002/jqs.2862\",\"bibtex\":\"@ARTICLE{Long2016-nj,\\n  title    = \\\"{Lateglacial and Holocene relative sea-level changes and first\\n              evidence for the Storegga tsunami in Sutherland, Scotland}\\\",\\n  author   = \\\"Long, Antony J and Barlow, Natasha L M and Dawson, Sue and Hill,\\n              Jon and Innes, James B and Kelham, Catherine and Milne, Fraser D\\n              and Dawson, Alastair\\\",\\n  abstract = \\\"We reconstruct one of the longest relative sea-level (RSL)\\n              records in north-west Europe from the north coast of mainland\\n              Scotland, using data collected from three sites in Loch Eriboll\\n              (Sutherland) that we combine with other studies from the region.\\n              Following deglaciation, RSL fell from a Lateglacial highstand of\\n              +6−8 m OD (Ordnance Datum = ca. mean sea level) at ca. 15 k cal a\\n              BP to below present, then rose to an early Holocene highstand and\\n              remained at ca. +1 m OD between ca. 7 and 3 k cal a BP, before\\n              falling to present. We find no evidence for significant\\n              differential Holocene glacio-isostatic adjustment between sites\\n              on the north-west (Lochinver, Loch Laxford), north (Loch Eriboll)\\n              and north-east (Wick) coast of mainland Scotland. This suggests\\n              that the region was rapidly deglaciated and there was little\\n              difference in ice loads across the region. From one site at the\\n              head of Loch Eriboll we report the most westerly sedimentary\\n              evidence for the early Holocene Storegga tsunami on the Scottish\\n              mainland. The presence of the Storegga tsunami in Loch Eriboll is\\n              predicted by a tsunami wave model, which suggests that the\\n              tsunami impacted the entire north coast of Scotland and probably\\n              also the Atlantic coastline of north-west Scotland.\\\",\\n  journal  = \\\"Journal of Quaternary Science\\\",\\n  volume   =  31,\\n  number   =  3,\\n  pages    = \\\"239--255\\\",\\n  month    =  apr,\\n  year     =  2016,\\n  keywords = \\\"glacio-isostatic adjustment; relative sea level; Storegga\\n              landslide; Storegga tsunami; tsunami\\\",\\n  issn     = \\\"1099-1417\\\",\\n  doi      = \\\"10.1002/jqs.2862\\\"\\n}\\n\\n\",\"author_short\":[\"Long, A. J\",\"Barlow, N. L M\",\"Dawson, S.\",\"Hill, J.\",\"Innes, J. B\",\"Kelham, C.\",\"Milne, F. D\",\"Dawson, A.\"],\"key\":\"Long2016-nj\",\"id\":\"Long2016-nj\",\"bibbaseid\":\"long-barlow-dawson-hill-innes-kelham-milne-dawson-lateglacialandholocenerelativesealevelchangesandfirstevidenceforthestoreggatsunamiinsutherlandscotland-2016\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"glacio-isostatic adjustment; relative sea level; Storegga landslide; Storegga tsunami; tsunami\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Comparing approaches for numerical modelling of tsunami generation by deformable submarine slides\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Smith\"],\"firstnames\":[\"Rebecca\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Collins\"],\"firstnames\":[\"Gareth\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"Stephan\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Parkinson\"],\"firstnames\":[\"Samuel\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wilson\"],\"firstnames\":[\"Cian\"],\"suffixes\":[]}],\"abstract\":\"Abstract Tsunami generated by submarine slides are arguably an under-considered risk in comparison to earthquake-generated tsunami. Numerical simulations of submarine slide-generated waves can be used to identify the important factors in determining wave characteristics. Here we use Fluidity, an open source finite element code, to simulate waves generated by deformable submarine slides. Fluidity uses flexible unstructured meshes combined with adaptivity which alters the mesh topology and resolution based on the simulation state, focussing or reducing resolution, when and where it is required. Fluidity also allows a number of different numerical approaches to be taken to simulate submarine slide deformation, free-surface representation, and wave generation within the same numerical framework. In this work we use a multi-material approach, considering either two materials (slide and water with a free surface) or three materials (slide, water and air), as well as a sediment model (sediment, water and free surface) approach. In all cases the slide is treated as a viscous fluid. Our results are shown to be consistent with laboratory experiments using a deformable submarine slide, and demonstrate good agreement when compared with other numerical models. The three different approaches for simulating submarine slide dynamics and tsunami wave generation produce similar waveforms and slide deformation geometries. However, each has its own merits depending on the application. Mesh adaptivity is shown to be able to reduce the computational cost without compromising the accuracy of results.\",\"journal\":\"Ocean Modelling\",\"volume\":\"100\",\"pages\":\"125–140\",\"month\":\"April\",\"year\":\"2016\",\"keywords\":\"Submarine Slide; Tsunami; Numerical Modelling; Validation; Adaptive Mesh\",\"issn\":\"1463-5003\",\"doi\":\"10.1016/j.ocemod.2016.02.007\",\"bibtex\":\"@ARTICLE{Smith2016-dl,\\n  title    = \\\"{Comparing approaches for numerical modelling of tsunami\\n              generation by deformable submarine slides}\\\",\\n  author   = \\\"Smith, Rebecca C and Hill, Jon and Collins, Gareth S and Piggott,\\n              Matthew D and Kramer, Stephan C and Parkinson, Samuel D and\\n              Wilson, Cian\\\",\\n  abstract = \\\"Abstract Tsunami generated by submarine slides are arguably an\\n              under-considered risk in comparison to earthquake-generated\\n              tsunami. Numerical simulations of submarine slide-generated waves\\n              can be used to identify the important factors in determining wave\\n              characteristics. Here we use Fluidity, an open source finite\\n              element code, to simulate waves generated by deformable submarine\\n              slides. Fluidity uses flexible unstructured meshes combined with\\n              adaptivity which alters the mesh topology and resolution based on\\n              the simulation state, focussing or reducing resolution, when and\\n              where it is required. Fluidity also allows a number of different\\n              numerical approaches to be taken to simulate submarine slide\\n              deformation, free-surface representation, and wave generation\\n              within the same numerical framework. In this work we use a\\n              multi-material approach, considering either two materials (slide\\n              and water with a free surface) or three materials (slide, water\\n              and air), as well as a sediment model (sediment, water and free\\n              surface) approach. In all cases the slide is treated as a viscous\\n              fluid. Our results are shown to be consistent with laboratory\\n              experiments using a deformable submarine slide, and demonstrate\\n              good agreement when compared with other numerical models. The\\n              three different approaches for simulating submarine slide\\n              dynamics and tsunami wave generation produce similar waveforms\\n              and slide deformation geometries. However, each has its own\\n              merits depending on the application. Mesh adaptivity is shown to\\n              be able to reduce the computational cost without compromising the\\n              accuracy of results.\\\",\\n  journal  = \\\"Ocean Modelling\\\",\\n  volume   =  100,\\n  pages    = \\\"125--140\\\",\\n  month    =  apr,\\n  year     =  2016,\\n  keywords = \\\"Submarine Slide; Tsunami; Numerical Modelling; Validation;\\n              Adaptive Mesh\\\",\\n  issn     = \\\"1463-5003\\\",\\n  doi      = \\\"10.1016/j.ocemod.2016.02.007\\\"\\n}\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"Smith, R. C\",\"Hill, J.\",\"Collins, G. S\",\"Piggott, M. D\",\"Kramer, S. C\",\"Parkinson, S. D\",\"Wilson, C.\"],\"key\":\"Smith2016-dl\",\"id\":\"Smith2016-dl\",\"bibbaseid\":\"smith-hill-collins-piggott-kramer-parkinson-wilson-comparingapproachesfornumericalmodellingoftsunamigenerationbydeformablesubmarineslides-2016\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Submarine Slide; Tsunami; Numerical Modelling; Validation; Adaptive Mesh\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Submarine landslides on the Great Barrier Reef shelf edge and upper slope: A mechanism for generating tsunamis on the north-east Australian coast?\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Webster\"],\"firstnames\":[\"Jody\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"George\"],\"firstnames\":[\"Nicholas\",\"P\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Beaman\"],\"firstnames\":[\"Robin\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Puga-Bernabéu\"],\"firstnames\":[\"Ángel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hinestrosa\"],\"firstnames\":[\"Gustavo\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Abbey\"],\"firstnames\":[\"Elizabeth\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Daniell\"],\"firstnames\":[\"James\",\"J\"],\"suffixes\":[]}],\"abstract\":\"Abstract Shallow (< 200 m) submarine landslides influence margin evolution and can produce devastating tsunamis, yet little is known about these processes on mixed siliciclastic–carbonate margins. We have discovered seven landslides along the shelf edge and upper slope of the central Great Barrier Reef (GBR), Australia. The largest shelf edge landslide is investigated in detail and represents a collapse of a 7 km long section of the shelf edge at 90 m water depth with coarse debris deposited up to 5.5 km away on the upper slope down to 250 m. The precise timing and triggering mechanisms are uncertain but available chronologic and seismic stratigraphic evidence suggests that this event occurred during the last deglacial sea-level rise between 20 and 14 ka. Regional bathymetric data confirms that these shelf edge and upper slope slides are restricted to the central GBR between latitude 18° and 19°S, suggesting a spatial relationship between the extensive Burdekin paleo-fluvial/delta system and shallow landslide activity. This study highlights an important local mechanism for the generation of tsunamis on this margin type, and numerical simulations under present conditions confirm that a 2 to 3 m tsunami wave could be produced locally. However, we consider that the risk of such slides, and their resulting tsunamis, to the modern coastline is negligible due to their relatively small size and the capacity of the GBR to dissipate the wave energy.\",\"journal\":\"Marine geology\",\"volume\":\"371\",\"pages\":\"120–129\",\"month\":\"January\",\"year\":\"2016\",\"keywords\":\"Great barrier reef; Continental shelf; Submarine landslides; Tsunami; Numerical model; Sea-level change\",\"issn\":\"0025-3227\",\"doi\":\"10.1016/j.margeo.2015.11.008\",\"bibtex\":\"@ARTICLE{Webster2016-hp,\\n  title    = \\\"{Submarine landslides on the Great Barrier Reef shelf edge and\\n              upper slope: A mechanism for generating tsunamis on the\\n              north-east Australian coast?}\\\",\\n  author   = \\\"Webster, Jody M and George, Nicholas P J and Beaman, Robin J and\\n              Hill, Jon and Puga-Bernab{\\\\'e}u, {\\\\'A}ngel and Hinestrosa,\\n              Gustavo and Abbey, Elizabeth A and Daniell, James J\\\",\\n  abstract = \\\"Abstract Shallow (< 200 m) submarine landslides influence margin\\n              evolution and can produce devastating tsunamis, yet little is\\n              known about these processes on mixed siliciclastic--carbonate\\n              margins. We have discovered seven landslides along the shelf edge\\n              and upper slope of the central Great Barrier Reef (GBR),\\n              Australia. The largest shelf edge landslide is investigated in\\n              detail and represents a collapse of a 7 km long section of the\\n              shelf edge at 90 m water depth with coarse debris deposited up to\\n              5.5 km away on the upper slope down to 250 m. The precise timing\\n              and triggering mechanisms are uncertain but available chronologic\\n              and seismic stratigraphic evidence suggests that this event\\n              occurred during the last deglacial sea-level rise between 20 and\\n              14 ka. Regional bathymetric data confirms that these shelf edge\\n              and upper slope slides are restricted to the central GBR between\\n              latitude 18° and 19°S, suggesting a spatial relationship between\\n              the extensive Burdekin paleo-fluvial/delta system and shallow\\n              landslide activity. This study highlights an important local\\n              mechanism for the generation of tsunamis on this margin type, and\\n              numerical simulations under present conditions confirm that a 2\\n              to 3 m tsunami wave could be produced locally. However, we\\n              consider that the risk of such slides, and their resulting\\n              tsunamis, to the modern coastline is negligible due to their\\n              relatively small size and the capacity of the GBR to dissipate\\n              the wave energy.\\\",\\n  journal  = \\\"Marine geology\\\",\\n  volume   =  371,\\n  pages    = \\\"120--129\\\",\\n  month    =  jan,\\n  year     =  2016,\\n  keywords = \\\"Great barrier reef; Continental shelf; Submarine landslides;\\n              Tsunami; Numerical model; Sea-level change\\\",\\n  issn     = \\\"0025-3227\\\",\\n  doi      = \\\"10.1016/j.margeo.2015.11.008\\\"\\n}\\n\\n\",\"author_short\":[\"Webster, J. M\",\"George, N. P J\",\"Beaman, R. J\",\"Hill, J.\",\"Puga-Bernabéu, Á.\",\"Hinestrosa, G.\",\"Abbey, E. A\",\"Daniell, J. J\"],\"key\":\"Webster2016-hp\",\"id\":\"Webster2016-hp\",\"bibbaseid\":\"webster-george-beaman-hill-pugabernabu-hinestrosa-abbey-daniell-submarinelandslidesonthegreatbarrierreefshelfedgeandupperslopeamechanismforgeneratingtsunamisonthenortheastaustraliancoast-2016\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Great barrier reef; Continental shelf; Submarine landslides; Tsunami; Numerical model; Sea-level change\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Not all aragonitic molluscs are missing: taphonomy and significance of a unique shelly lagerstätte from the Jurassic of SW Britain\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Jordan\"],\"firstnames\":[\"Naomi\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"Peter\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sutton\"],\"firstnames\":[\"Mark\",\"D\"],\"suffixes\":[]}],\"abstract\":\"The Blue Lias Formation at Lyme Regis (Dorset, UK) includes an exceptional pavement of abundant large ammonites that accumulated during a period of profound sedimentary condensation. Ammonites were originally composed of aragonite, an unstable polymorph of calcium carbonate, and such fossils are typically prone to dissolution; the occurrence of a rich association of aragonitic shells in a condensed bed is highly unusual. Aragonite dissolution occurs when pore-water pH is reduced by the oxidization of hydrogen sulphide close to the sediment-water interface. Evidence suggests that, in this case, the oxygen concentrations in the overlying water column were low during deposition. This inhibited the oxidation of sulphides and the associated lowering of pH, allowing aragonite to survive long enough for the shell to be neomorphosed to calcite. The loss of aragonite impacts upon estimates of past biodiversity and carbonate accumulation rates. The preservational model presented here implies that diagenetic loss of aragonite will be greatest in those areas where dysoxic-anoxic sediment lies beneath an oxic waterbody but least where the sediment and overlying water are oxygen depleted. Unfortunately, this implies that preservational bias through aragonite loss will be greatest in those biotopes which are typically most diverse and least where biodiversity is lowest due to oxygen restriction.\",\"journal\":\"Lethaia\",\"month\":\"March\",\"year\":\"2015\",\"keywords\":\"Ammonite; aragonite dissolution; carbonate; dysoxia; Lias; taphonomy\",\"issn\":\"0024-1164, 1502-3931\",\"doi\":\"10.1111/let.12126\",\"bibtex\":\"@ARTICLE{Jordan2015-tr,\\n  title    = \\\"{Not all aragonitic molluscs are missing: taphonomy and\\n              significance of a unique shelly lagerst{\\\\\\\"a}tte from the Jurassic\\n              of SW Britain}\\\",\\n  author   = \\\"Jordan, Naomi and Allison, Peter A and Hill, Jon and Sutton, Mark\\n              D\\\",\\n  abstract = \\\"The Blue Lias Formation at Lyme Regis (Dorset, UK) includes an\\n              exceptional pavement of abundant large ammonites that accumulated\\n              during a period of profound sedimentary condensation. Ammonites\\n              were originally composed of aragonite, an unstable polymorph of\\n              calcium carbonate, and such fossils are typically prone to\\n              dissolution; the occurrence of a rich association of aragonitic\\n              shells in a condensed bed is highly unusual. Aragonite\\n              dissolution occurs when pore-water pH is reduced by the\\n              oxidization of hydrogen sulphide close to the sediment-water\\n              interface. Evidence suggests that, in this case, the oxygen\\n              concentrations in the overlying water column were low during\\n              deposition. This inhibited the oxidation of sulphides and the\\n              associated lowering of pH, allowing aragonite to survive long\\n              enough for the shell to be neomorphosed to calcite. The loss of\\n              aragonite impacts upon estimates of past biodiversity and\\n              carbonate accumulation rates. The preservational model presented\\n              here implies that diagenetic loss of aragonite will be greatest\\n              in those areas where dysoxic-anoxic sediment lies beneath an oxic\\n              waterbody but least where the sediment and overlying water are\\n              oxygen depleted. Unfortunately, this implies that preservational\\n              bias through aragonite loss will be greatest in those biotopes\\n              which are typically most diverse and least where biodiversity is\\n              lowest due to oxygen restriction.\\\",\\n  journal  = \\\"Lethaia\\\",\\n  month    =  mar,\\n  year     =  2015,\\n  keywords = \\\"Ammonite; aragonite dissolution; carbonate; dysoxia; Lias;\\n              taphonomy\\\",\\n  issn     = \\\"0024-1164, 1502-3931\\\",\\n  doi      = \\\"10.1111/let.12126\\\"\\n}\\n\\n\",\"author_short\":[\"Jordan, N.\",\"Allison, P. A\",\"Hill, J.\",\"Sutton, M. D\"],\"key\":\"Jordan2015-tr\",\"id\":\"Jordan2015-tr\",\"bibbaseid\":\"jordan-allison-hill-sutton-notallaragoniticmolluscsaremissingtaphonomyandsignificanceofauniqueshellylagerstttefromthejurassicofswbritain-2015\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Ammonite; aragonite dissolution; carbonate; dysoxia; Lias; taphonomy\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Tidal resource extraction in the Pentland Firth, UK: Potential impacts on flow regime and sediment transport in the Inner Sound of Stroma\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Martin-Short\"],\"firstnames\":[\"R\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"S\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"P\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M\",\"D\"],\"suffixes\":[]}],\"abstract\":\"Abstract Large-scale extraction of power from tidal streams within the Pentland Firth is expected to be underway in the near future. The Inner Sound of Stroma in particular has attracted significant commercial interest. To understand potential environmental impacts of the installation of a tidal turbine array a case study based upon the Inner Sound is considered. A numerical computational fluid dynamics model, Fluidity, is used to conduct a series of depth-averaged simulations to investigate velocity and bed shear stress changes due to the presence of idealised tidal turbine arrays. The number of turbines is increased from zero to 400. It is found that arrays in excess of 85 turbines have the potential to affect bed shear stress distributions in such a way that the most favourable sites for sediment accumulation migrate from the edges of the Inner Sound towards its centre. Deposits of fine gravel and coarse sand are indicated to occur within arrays of greater than 240 turbines with removal of existing deposits in the shallower channel margins also possible. The effects of the turbine array may be seen several kilometres from the site which has implications not only on sediment accumulation, but also on the benthic fauna.\",\"journal\":\"Renewable Energy\",\"volume\":\"76\",\"number\":\"0\",\"pages\":\"596–607\",\"month\":\"April\",\"year\":\"2015\",\"keywords\":\"Tidal energy; Modelling; Pentland Firth; Finite element\",\"issn\":\"0960-1481\",\"doi\":\"10.1016/j.renene.2014.11.079\",\"bibtex\":\"@ARTICLE{Martin-Short2015-hq,\\n  title    = \\\"{Tidal resource extraction in the Pentland Firth, UK: Potential\\n              impacts on flow regime and sediment transport in the Inner Sound\\n              of Stroma}\\\",\\n  author   = \\\"Martin-Short, R and Hill, J and Kramer, S C and Avdis, A and\\n              Allison, P A and Piggott, M D\\\",\\n  abstract = \\\"Abstract Large-scale extraction of power from tidal streams\\n              within the Pentland Firth is expected to be underway in the near\\n              future. The Inner Sound of Stroma in particular has attracted\\n              significant commercial interest. To understand potential\\n              environmental impacts of the installation of a tidal turbine\\n              array a case study based upon the Inner Sound is considered. A\\n              numerical computational fluid dynamics model, Fluidity, is used\\n              to conduct a series of depth-averaged simulations to investigate\\n              velocity and bed shear stress changes due to the presence of\\n              idealised tidal turbine arrays. The number of turbines is\\n              increased from zero to 400. It is found that arrays in excess of\\n              85 turbines have the potential to affect bed shear stress\\n              distributions in such a way that the most favourable sites for\\n              sediment accumulation migrate from the edges of the Inner Sound\\n              towards its centre. Deposits of fine gravel and coarse sand are\\n              indicated to occur within arrays of greater than 240 turbines\\n              with removal of existing deposits in the shallower channel\\n              margins also possible. The effects of the turbine array may be\\n              seen several kilometres from the site which has implications not\\n              only on sediment accumulation, but also on the benthic fauna.\\\",\\n  journal  = \\\"Renewable Energy\\\",\\n  volume   =  76,\\n  number   =  0,\\n  pages    = \\\"596--607\\\",\\n  month    =  apr,\\n  year     =  2015,\\n  keywords = \\\"Tidal energy; Modelling; Pentland Firth; Finite element\\\",\\n  issn     = \\\"0960-1481\\\",\\n  doi      = \\\"10.1016/j.renene.2014.11.079\\\"\\n}\\n\\n\",\"author_short\":[\"Martin-Short, R\",\"Hill, J\",\"Kramer, S C\",\"Avdis, A\",\"Allison, P A\",\"Piggott, M D\"],\"key\":\"Martin-Short2015-hq\",\"id\":\"Martin-Short2015-hq\",\"bibbaseid\":\"martinshort-hill-kramer-avdis-allison-piggott-tidalresourceextractioninthepentlandfirthukpotentialimpactsonflowregimeandsedimenttransportintheinnersoundofstroma-2015\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Tidal energy; Modelling; Pentland Firth; Finite element\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":2,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Integration of Geographic Information System frameworks into domain discretisation and meshing processes for geophysical models\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Candy\"],\"firstnames\":[\"A\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Gorman\"],\"firstnames\":[\"G\",\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M\",\"D\"],\"suffixes\":[]}],\"abstract\":\"Abstract. Computational simulations of physical phenomena rely on an accurate discretisation of the model domain. Numerical models have increased in sophistication to a level where it is possible to support terrain-following boundaries that conform accurately to real physical interfaces, and resolve a multiscale of spatial resolutions. Whilst simulation codes are maturing in this area, pre-processing tools have not developed significantly enough to competently initialise these problems in a rigorous, efficient and recomputable ...\",\"journal\":\"Geoscientific Model Development Discussions\",\"publisher\":\"Copernicus GmbH\",\"volume\":\"7\",\"number\":\"5\",\"pages\":\"5993–6060\",\"year\":\"2014\",\"bibtex\":\"@ARTICLE{Candy2014-vi,\\n  title     = \\\"{Integration of Geographic Information System frameworks into\\n               domain discretisation and meshing processes for geophysical\\n               models}\\\",\\n  author    = \\\"Candy, A S and Avdis, A and Hill, J and Gorman, G J and Piggott,\\n               M D\\\",\\n  abstract  = \\\"Abstract. Computational simulations of physical phenomena rely\\n               on an accurate discretisation of the model domain. Numerical\\n               models have increased in sophistication to a level where it is\\n               possible to support terrain-following boundaries that conform\\n               accurately to real physical interfaces, and resolve a multiscale\\n               of spatial resolutions. Whilst simulation codes are maturing in\\n               this area, pre-processing tools have not developed significantly\\n               enough to competently initialise these problems in a rigorous,\\n               efficient and recomputable ...\\\",\\n  journal   = \\\"Geoscientific Model Development Discussions\\\",\\n  publisher = \\\"Copernicus GmbH\\\",\\n  volume    =  7,\\n  number    =  5,\\n  pages     = \\\"5993--6060\\\",\\n  year      =  2014\\n}\\n\\n\",\"author_short\":[\"Candy, A S\",\"Avdis, A\",\"Hill, J\",\"Gorman, G J\",\"Piggott, M D\"],\"key\":\"Candy2014-vi\",\"id\":\"Candy2014-vi\",\"bibbaseid\":\"candy-avdis-hill-gorman-piggott-integrationofgeographicinformationsystemframeworksintodomaindiscretisationandmeshingprocessesforgeophysicalmodels-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"inproceedings\",\"type\":\"inproceedings\",\"title\":\"Optimisation and parallelisation of the partitioning around medoids function in R\",\"booktitle\":\"High Performance Computing and Simulation (HPCS), 2011 International Conference on\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Piotrowski\"],\"firstnames\":[\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sloan\"],\"firstnames\":[\"T\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mewsissen\"],\"firstnames\":[\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Forster\"],\"firstnames\":[\"T\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mitchell\"],\"firstnames\":[\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Petrou\"],\"firstnames\":[\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dobrezelecki\"],\"firstnames\":[\"B\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ghazal\"],\"firstnames\":[\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Trew\"],\"firstnames\":[\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]}],\"abstract\":\"R is a free statistical programming language commonly used for the analysis of high-throughput microarray and other data. It is currently unable to easily utilise multi processor architectures without substantial changes to existing R scripts. Further, working with large volumes of data often leads to slow processing and even memory allocation faults. A recent survey highlighted clustering algorithms as both computation and data intensive bottlenecks in post-genomic data analyses. These algorithms aim to sort numeric vectors (such as gene expression profiles) into groups by minimising vector distances within groups and maximising them between groups. This paper describes the optimisation and parallelisation of a popular clustering algorithm, partitioning around medoids (PAM), for the Simple Parallel R INTerface (SPRINT). SPRINT allows R users to exploit high performance computing systems without expert knowledge of such systems. This paper reports on a serial optimisation of the original code and a subsequent parallel implementation. The parallel implementation enables the processing of data sets that exceed the available physical memory and can yield, depending on the data set, over 100-fold increase in performance.\",\"pages\":\"707–713\",\"month\":\"July\",\"year\":\"2011\",\"keywords\":\"biology computing;genomics;microprocessor chips;multiprocessing systems;optimisation;parallel architectures;parallel processing;pattern clustering;statistical analysis;R scripts;clustering algorithms;data intensive bottlenecks;high throughput microarray;medoids function;memory allocation faults;multiprocessor architectures;optimisation;partitioning around medoids;partitioning parallelisation;post genomic data analyses;simple parallel R interface;statistical programming language;Algorithm design and analysis;Benchmark testing;Clustering algorithms;High performance computing;Memory management;Optimization;Partitioning algorithms;Clustering;High Performance Computing;Message Passing Interface;Microarray;R\",\"doi\":\"10.1109/HPCSim.2011.5999896\",\"bibtex\":\"@INPROCEEDINGS{Piotrowski2011-mo,\\n  title     = \\\"{Optimisation and parallelisation of the partitioning around\\n               medoids function in R}\\\",\\n  booktitle = \\\"{High Performance Computing and Simulation (HPCS), 2011\\n               International Conference on}\\\",\\n  author    = \\\"Piotrowski, M and Sloan, T M and Mewsissen, M and Forster, T and\\n               Mitchell, L and Petrou, S and Dobrezelecki, B and Ghazal, P and\\n               Trew, A and Hill, J\\\",\\n  abstract  = \\\"R is a free statistical programming language commonly used for\\n               the analysis of high-throughput microarray and other data. It is\\n               currently unable to easily utilise multi processor architectures\\n               without substantial changes to existing R scripts. Further,\\n               working with large volumes of data often leads to slow\\n               processing and even memory allocation faults. A recent survey\\n               highlighted clustering algorithms as both computation and data\\n               intensive bottlenecks in post-genomic data analyses. These\\n               algorithms aim to sort numeric vectors (such as gene expression\\n               profiles) into groups by minimising vector distances within\\n               groups and maximising them between groups. This paper describes\\n               the optimisation and parallelisation of a popular clustering\\n               algorithm, partitioning around medoids (PAM), for the Simple\\n               Parallel R INTerface (SPRINT). SPRINT allows R users to exploit\\n               high performance computing systems without expert knowledge of\\n               such systems. This paper reports on a serial optimisation of the\\n               original code and a subsequent parallel implementation. The\\n               parallel implementation enables the processing of data sets that\\n               exceed the available physical memory and can yield, depending on\\n               the data set, over 100-fold increase in performance.\\\",\\n  pages     = \\\"707--713\\\",\\n  month     =  jul,\\n  year      =  2011,\\n  keywords  = \\\"biology computing;genomics;microprocessor chips;multiprocessing\\n               systems;optimisation;parallel architectures;parallel\\n               processing;pattern clustering;statistical analysis;R\\n               scripts;clustering algorithms;data intensive bottlenecks;high\\n               throughput microarray;medoids function;memory allocation\\n               faults;multiprocessor architectures;optimisation;partitioning\\n               around medoids;partitioning parallelisation;post genomic data\\n               analyses;simple parallel R interface;statistical programming\\n               language;Algorithm design and analysis;Benchmark\\n               testing;Clustering algorithms;High performance computing;Memory\\n               management;Optimization;Partitioning algorithms;Clustering;High\\n               Performance Computing;Message Passing Interface;Microarray;R\\\",\\n  doi       = \\\"10.1109/HPCSim.2011.5999896\\\"\\n}\\n\\n\",\"author_short\":[\"Piotrowski, M\",\"Sloan, T M\",\"Mewsissen, M\",\"Forster, T\",\"Mitchell, L\",\"Petrou, S\",\"Dobrezelecki, B\",\"Ghazal, P\",\"Trew, A\",\"Hill, J\"],\"key\":\"Piotrowski2011-mo\",\"id\":\"Piotrowski2011-mo\",\"bibbaseid\":\"piotrowski-sloan-mewsissen-forster-mitchell-petrou-dobrezelecki-ghazal-etal-optimisationandparallelisationofthepartitioningaroundmedoidsfunctioninr-2011\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"biology computing;genomics;microprocessor chips;multiprocessing systems;optimisation;parallel architectures;parallel processing;pattern clustering;statistical analysis;R scripts;clustering algorithms;data intensive bottlenecks;high throughput microarray;medoids function;memory allocation faults;multiprocessor architectures;optimisation;partitioning around medoids;partitioning parallelisation;post genomic data analyses;simple parallel R interface;statistical programming language;Algorithm design and analysis;Benchmark testing;Clustering algorithms;High performance computing;Memory management;Optimization;Partitioning algorithms;Clustering;High Performance Computing;Message Passing Interface;Microarray;R\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Optimization of a parallel permutation testing function for the SPRINT R package\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Petrou\"],\"firstnames\":[\"Savvas\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sloan\"],\"firstnames\":[\"Terence\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mewissen\"],\"firstnames\":[\"Muriel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Forster\"],\"firstnames\":[\"Thorsten\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piotrowski\"],\"firstnames\":[\"Michal\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Dobrzelecki\"],\"firstnames\":[\"Bartosz\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ghazal\"],\"firstnames\":[\"Peter\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Trew\"],\"firstnames\":[\"Arthur\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"affiliation\":\"Edinburgh Parallel Computing Centre, University of Edinburgh Edinburgh, EH9 3JZ, UK.\",\"abstract\":\"The statistical language R and its Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by some analyses has reached the limits of many common bioinformatics computing infrastructures. High Performance Computing systems offer a solution to this issue. The Simple Parallel R Interface (SPRINT) is a package that provides biostatisticians with easy access to High Performance Computing systems and allows the addition of parallelized functions to R. Previous work has established that the SPRINT implementation of an R permutation testing function has close to optimal scaling on up to 512 processors on a supercomputer. Access to supercomputers, however, is not always possible, and so the work presented here compares the performance of the SPRINT implementation on a supercomputer with benchmarks on a range of platforms including cloud resources and a common desktop machine with multiprocessing capabilities. Copyright © 2011 John Wiley & Sons, Ltd.\",\"journal\":\"Concurrency and computation: practice & experience\",\"volume\":\"23\",\"number\":\"17\",\"pages\":\"2258–2268\",\"month\":\"December\",\"year\":\"2011\",\"issn\":\"1532-0626\",\"pmid\":\"23335858\",\"doi\":\"10.1002/cpe.1787\",\"pmc\":\"PMC3546371\",\"bibtex\":\"@ARTICLE{Petrou2011-sv,\\n  title       = \\\"{Optimization of a parallel permutation testing function for\\n                 the SPRINT R package}\\\",\\n  author      = \\\"Petrou, Savvas and Sloan, Terence M and Mewissen, Muriel and\\n                 Forster, Thorsten and Piotrowski, Michal and Dobrzelecki,\\n                 Bartosz and Ghazal, Peter and Trew, Arthur and Hill, Jon\\\",\\n  affiliation = \\\"Edinburgh Parallel Computing Centre, University of Edinburgh\\n                 Edinburgh, EH9 3JZ, UK.\\\",\\n  abstract    = \\\"The statistical language R and its Bioconductor package are\\n                 favoured by many biostatisticians for processing microarray\\n                 data. The amount of data produced by some analyses has reached\\n                 the limits of many common bioinformatics computing\\n                 infrastructures. High Performance Computing systems offer a\\n                 solution to this issue. The Simple Parallel R Interface\\n                 (SPRINT) is a package that provides biostatisticians with easy\\n                 access to High Performance Computing systems and allows the\\n                 addition of parallelized functions to R. Previous work has\\n                 established that the SPRINT implementation of an R permutation\\n                 testing function has close to optimal scaling on up to 512\\n                 processors on a supercomputer. Access to supercomputers,\\n                 however, is not always possible, and so the work presented\\n                 here compares the performance of the SPRINT implementation on\\n                 a supercomputer with benchmarks on a range of platforms\\n                 including cloud resources and a common desktop machine with\\n                 multiprocessing capabilities. Copyright \\\\copyright{} 2011 John\\n                 Wiley \\\\& Sons, Ltd.\\\",\\n  journal     = \\\"Concurrency and computation: practice \\\\& experience\\\",\\n  volume      =  23,\\n  number      =  17,\\n  pages       = \\\"2258--2268\\\",\\n  month       =  dec,\\n  year        =  2011,\\n  issn        = \\\"1532-0626\\\",\\n  pmid        = \\\"23335858\\\",\\n  doi         = \\\"10.1002/cpe.1787\\\",\\n  pmc         = \\\"PMC3546371\\\"\\n}\\n\\n\",\"author_short\":[\"Petrou, S.\",\"Sloan, T. M\",\"Mewissen, M.\",\"Forster, T.\",\"Piotrowski, M.\",\"Dobrzelecki, B.\",\"Ghazal, P.\",\"Trew, A.\",\"Hill, J.\"],\"key\":\"Petrou2011-sv\",\"id\":\"Petrou2011-sv\",\"bibbaseid\":\"petrou-sloan-mewissen-forster-piotrowski-dobrzelecki-ghazal-trew-etal-optimizationofaparallelpermutationtestingfunctionforthesprintrpackage-2011\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Exploiting Parallel R in the Cloud with SPRINT\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Piotrowski\"],\"firstnames\":[\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"McGilvary\"],\"firstnames\":[\"G\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sloan\"],\"firstnames\":[\"T\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mewissen\"],\"firstnames\":[\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Lloyd\"],\"firstnames\":[\"A\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Forster\"],\"firstnames\":[\"T\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mitchell\"],\"firstnames\":[\"L\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ghazal\"],\"firstnames\":[\"P\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]}],\"journal\":\"Methods of information in medicine\",\"volume\":\"52\",\"number\":\"1\",\"pages\":\"80–90\",\"month\":\"December\",\"year\":\"2012\",\"issn\":\"0026-1270\",\"doi\":\"10.3414/ME11-02-0039\",\"bibtex\":\"@ARTICLE{Piotrowski2012-lc,\\n  title   = \\\"{Exploiting Parallel R in the Cloud with SPRINT}\\\",\\n  author  = \\\"Piotrowski, M and McGilvary, G A and Sloan, T M and Mewissen, M\\n             and Lloyd, A D and Forster, T and Mitchell, L and Ghazal, P and\\n             Hill, J\\\",\\n  journal = \\\"Methods of information in medicine\\\",\\n  volume  =  52,\\n  number  =  1,\\n  pages   = \\\"80--90\\\",\\n  month   =  dec,\\n  year    =  2012,\\n  issn    = \\\"0026-1270\\\",\\n  doi     = \\\"10.3414/ME11-02-0039\\\"\\n}\\n\\n\",\"author_short\":[\"Piotrowski, M\",\"McGilvary, G A\",\"Sloan, T M\",\"Mewissen, M\",\"Lloyd, A D\",\"Forster, T\",\"Mitchell, L\",\"Ghazal, P\",\"Hill, J\"],\"key\":\"Piotrowski2012-lc\",\"id\":\"Piotrowski2012-lc\",\"bibbaseid\":\"piotrowski-mcgilvary-sloan-mewissen-lloyd-forster-mitchell-ghazal-etal-exploitingparallelrinthecloudwithsprint-2012\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Adapting to life: ocean biogeochemical modelling and adaptive remeshing\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Popova\"],\"firstnames\":[\"E\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ham\"],\"firstnames\":[\"D\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Srokosz\"],\"firstnames\":[\"M\"],\"suffixes\":[]}],\"journal\":\"Ocean Science\",\"volume\":\"10\",\"number\":\"3\",\"pages\":\"323–343\",\"month\":\"May\",\"year\":\"2014\",\"issn\":\"1812-0784, 1812-0792\",\"doi\":\"10.5194/os-10-323-2014\",\"bibtex\":\"@ARTICLE{Hill2014-sx,\\n  title   = \\\"{Adapting to life: ocean biogeochemical modelling and adaptive\\n             remeshing}\\\",\\n  author  = \\\"Hill, J and Popova, E E and Ham, D A and Piggott, M D and Srokosz,\\n             M\\\",\\n  journal = \\\"Ocean Science\\\",\\n  volume  =  10,\\n  number  =  3,\\n  pages   = \\\"323--343\\\",\\n  month   =  may,\\n  year    =  2014,\\n  issn    = \\\"1812-0784, 1812-0792\\\",\\n  doi     = \\\"10.5194/os-10-323-2014\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J\",\"Popova, E E\",\"Ham, D A\",\"Piggott, M D\",\"Srokosz, M\"],\"key\":\"Hill2014-sx\",\"id\":\"Hill2014-sx\",\"bibbaseid\":\"hill-popova-ham-piggott-srokosz-adaptingtolifeoceanbiogeochemicalmodellingandadaptiveremeshing-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Direct numerical simulations of particle-laden density currents with adaptive, discontinuous finite elements\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Parkinson\"],\"firstnames\":[\"S\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M\",\"D\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Allison\"],\"firstnames\":[\"P\",\"A\"],\"suffixes\":[]}],\"journal\":\"Geoscientific Model Development\",\"volume\":\"7\",\"number\":\"5\",\"pages\":\"1945–1960\",\"year\":\"2014\",\"doi\":\"10.5194/gmd-7-1945-2014\",\"bibtex\":\"@ARTICLE{Parkinson2014-zx,\\n  title   = \\\"{Direct numerical simulations of particle-laden density currents\\n             with adaptive, discontinuous finite elements}\\\",\\n  author  = \\\"Parkinson, S D and Hill, J and Piggott, M D and Allison, P A\\\",\\n  journal = \\\"Geoscientific Model Development\\\",\\n  volume  =  7,\\n  number  =  5,\\n  pages   = \\\"1945--1960\\\",\\n  year    =  2014,\\n  doi     = \\\"10.5194/gmd-7-1945-2014\\\"\\n}\\n\\n% The entry below contains non-ASCII chars that could not be converted\\n% to a LaTeX equivalent.\\n\",\"author_short\":[\"Parkinson, S D\",\"Hill, J\",\"Piggott, M D\",\"Allison, P A\"],\"key\":\"Parkinson2014-zx\",\"id\":\"Parkinson2014-zx\",\"bibbaseid\":\"parkinson-hill-piggott-allison-directnumericalsimulationsofparticleladendensitycurrentswithadaptivediscontinuousfiniteelements-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"How does multiscale modelling and inclusion of realistic palaeobathymetry affect numerical simulation of the Storegga Slide tsunami?\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Collins\"],\"firstnames\":[\"Gareth\",\"S\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Avdis\"],\"firstnames\":[\"Alexandros\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Kramer\"],\"firstnames\":[\"Stephan\",\"C\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"Matthew\",\"D\"],\"suffixes\":[]}],\"abstract\":\"Abstract The ∼8.15 ka Storegga submarine slide was a large (∼3000 km3), tsunamigenic slide off the coast of Norway. The resulting tsunami had run-up heights of around 10–20 m on the Norwegian coast, over 12 m in Shetland, 3–6 m on the Scottish mainland coast and reached as far as Greenland. Accurate numerical simulations of Storegga require high spatial resolution near the coasts, particularly near tsunami run-up observations, and also in the slide region. However, as the computational domain must span the whole of the Norwegian-Greenland sea, employing uniformly high spatial resolution is computationally prohibitive. To overcome this problem, we present a multiscale numerical model of the Storegga slide-generated tsunami where spatial resolution varies from 500 m to 50 km across the entire Norwegian-Greenland sea domain to optimally resolve the slide region, important coastlines and bathymetric changes. We compare results from our multiscale model to previous results using constant-resolution models and show that accounting for changes in bathymetry since 8.15 ka, neglected in previous numerical studies of the Storegga slide-tsunami, improves the agreement between the model and inferred run-up heights in specific locations, especially in the Shetlands, where maximum run-up height increased from 8 m (modern bathymetry) to 13 m (palaeobathymetry). By tracking the Storegga tsunami as far south as the southern North sea, we also found that wave heights were high enough to inundate Doggerland, an island in the southern North Sea prior to sea level rise over the last 8 ka.\",\"journal\":\"Ocean Modelling\",\"volume\":\"83\",\"number\":\"0\",\"pages\":\"11–25\",\"month\":\"November\",\"year\":\"2014\",\"keywords\":\"Submarine slide; Storegga; Tsunami; Numerical modelling; Multiscale\",\"issn\":\"1463-5003\",\"doi\":\"10.1016/j.ocemod.2014.08.007\",\"bibtex\":\"@ARTICLE{Hill2014-jo,\\n  title    = \\\"{How does multiscale modelling and inclusion of realistic\\n              palaeobathymetry affect numerical simulation of the Storegga\\n              Slide tsunami?}\\\",\\n  author   = \\\"Hill, Jon and Collins, Gareth S and Avdis, Alexandros and Kramer,\\n              Stephan C and Piggott, Matthew D\\\",\\n  abstract = \\\"Abstract The ∼8.15 ka Storegga submarine slide was a large (∼3000\\n              km3), tsunamigenic slide off the coast of Norway. The resulting\\n              tsunami had run-up heights of around 10--20 m on the Norwegian\\n              coast, over 12 m in Shetland, 3--6 m on the Scottish mainland\\n              coast and reached as far as Greenland. Accurate numerical\\n              simulations of Storegga require high spatial resolution near the\\n              coasts, particularly near tsunami run-up observations, and also\\n              in the slide region. However, as the computational domain must\\n              span the whole of the Norwegian-Greenland sea, employing\\n              uniformly high spatial resolution is computationally prohibitive.\\n              To overcome this problem, we present a multiscale numerical model\\n              of the Storegga slide-generated tsunami where spatial resolution\\n              varies from 500 m to 50 km across the entire Norwegian-Greenland\\n              sea domain to optimally resolve the slide region, important\\n              coastlines and bathymetric changes. We compare results from our\\n              multiscale model to previous results using constant-resolution\\n              models and show that accounting for changes in bathymetry since\\n              8.15 ka, neglected in previous numerical studies of the Storegga\\n              slide-tsunami, improves the agreement between the model and\\n              inferred run-up heights in specific locations, especially in the\\n              Shetlands, where maximum run-up height increased from 8 m (modern\\n              bathymetry) to 13 m (palaeobathymetry). By tracking the Storegga\\n              tsunami as far south as the southern North sea, we also found\\n              that wave heights were high enough to inundate Doggerland, an\\n              island in the southern North Sea prior to sea level rise over the\\n              last 8 ka.\\\",\\n  journal  = \\\"Ocean Modelling\\\",\\n  volume   =  83,\\n  number   =  0,\\n  pages    = \\\"11--25\\\",\\n  month    =  nov,\\n  year     =  2014,\\n  keywords = \\\"Submarine slide; Storegga; Tsunami; Numerical modelling;\\n              Multiscale\\\",\\n  issn     = \\\"1463-5003\\\",\\n  doi      = \\\"10.1016/j.ocemod.2014.08.007\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Collins, G. S\",\"Avdis, A.\",\"Kramer, S. C\",\"Piggott, M. D\"],\"key\":\"Hill2014-jo\",\"id\":\"Hill2014-jo\",\"bibbaseid\":\"hill-collins-avdis-kramer-piggott-howdoesmultiscalemodellingandinclusionofrealisticpalaeobathymetryaffectnumericalsimulationofthestoreggaslidetsunami-2014\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Submarine slide; Storegga; Tsunami; Numerical modelling; Multiscale\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"The Supertree Toolkit 2: a new and improved software package with a Graphical User Interface for supertree construction\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Davis\"],\"firstnames\":[\"Katie\"],\"suffixes\":[]}],\"abstract\":\"Building large supertrees involves the collection, storage, and processing of thousands of individual phylogenies to create large phylogenies with thousands to tens of thousands of taxa. Such large phylogenies are useful for macroevolutionary studies, comparative biology and in conservation and biodiversity. No easy to use and fully integrated software package currently exists to carry out this task. Here, we present a new Python-based software package that uses well defined XML schema to manage both data and metadata. It builds on previous versions by 1) including new processing steps, such as Safe Taxonomic Reduction, 2) using a user-friendly GUI that guides the user to complete at least the minimum information required and includes context-sensitive documentation, and 3) a revised storage format that integrates both tree- and meta-data into a single file. These data can then be manipulated according to a well-defined, but flexible, processing pipeline using either the GUI or a command-line based tool. Processing steps include standardising names, deleting or replacing taxa, ensuring adequate taxonomic overlap, ensuring data independence, and safe taxonomic reduction. This software has been successfully used to store and process data consisting of over 1000 trees ready for analyses using standard supertree methods. This software makes large supertree creation a much easier task and provides far greater flexibility for further work.\",\"journal\":\"Biodiversity Data Journal\",\"publisher\":\"Pensoft Publishers\",\"volume\":\"2\",\"pages\":\"e1053\",\"month\":\"March\",\"year\":\"2014\",\"issn\":\"1314-2828, 1314-2828\",\"doi\":\"10.3897/BDJ.2.e1053\",\"bibtex\":\"@ARTICLE{Hill2014-bg,\\n  title     = \\\"{The Supertree Toolkit 2: a new and improved software package\\n               with a Graphical User Interface for supertree construction}\\\",\\n  author    = \\\"Hill, Jon and Davis, Katie\\\",\\n  abstract  = \\\"Building large supertrees involves the collection, storage, and\\n               processing of thousands of individual phylogenies to create\\n               large phylogenies with thousands to tens of thousands of taxa.\\n               Such large phylogenies are useful for macroevolutionary studies,\\n               comparative biology and in conservation and biodiversity. No\\n               easy to use and fully integrated software package currently\\n               exists to carry out this task. Here, we present a new\\n               Python-based software package that uses well defined XML schema\\n               to manage both data and metadata. It builds on previous versions\\n               by 1) including new processing steps, such as Safe Taxonomic\\n               Reduction, 2) using a user-friendly GUI that guides the user to\\n               complete at least the minimum information required and includes\\n               context-sensitive documentation, and 3) a revised storage format\\n               that integrates both tree- and meta-data into a single file.\\n               These data can then be manipulated according to a well-defined,\\n               but flexible, processing pipeline using either the GUI or a\\n               command-line based tool. Processing steps include standardising\\n               names, deleting or replacing taxa, ensuring adequate taxonomic\\n               overlap, ensuring data independence, and safe taxonomic\\n               reduction. This software has been successfully used to store and\\n               process data consisting of over 1000 trees ready for analyses\\n               using standard supertree methods. This software makes large\\n               supertree creation a much easier task and provides far greater\\n               flexibility for further work.\\\",\\n  journal   = \\\"Biodiversity Data Journal\\\",\\n  publisher = \\\"Pensoft Publishers\\\",\\n  volume    =  2,\\n  pages     = \\\"e1053\\\",\\n  month     =  mar,\\n  year      =  2014,\\n  issn      = \\\"1314-2828, 1314-2828\\\",\\n  doi       = \\\"10.3897/BDJ.2.e1053\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Davis, K.\"],\"key\":\"Hill2014-bg\",\"id\":\"Hill2014-bg\",\"bibbaseid\":\"hill-davis-thesupertreetoolkit2anewandimprovedsoftwarepackagewithagraphicaluserinterfaceforsupertreeconstruction-2014\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"SPRINT: a new parallel framework for R\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hambley\"],\"firstnames\":[\"Matthew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Forster\"],\"firstnames\":[\"Thorsten\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Mewissen\"],\"firstnames\":[\"Muriel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Sloan\"],\"firstnames\":[\"Terence\",\"M\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Scharinger\"],\"firstnames\":[\"Florian\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Trew\"],\"firstnames\":[\"Arthur\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ghazal\"],\"firstnames\":[\"Peter\"],\"suffixes\":[]}],\"affiliation\":\"EPCC, The University of Edinburgh, James Clerk Maxwell Building, Mayfield Road, Edinburgh EH93JZ, UK. j.hill@epcc.ed.ac.uk\",\"abstract\":\"BACKGROUND: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of the resulting data tests the limits of existing bioinformatics computing infrastructure. A solution to this issue is to use High Performance Computing (HPC) systems, which contain many processors and more memory than desktop computer systems. Many biostatisticians use R to process the data gleaned from microarray analysis and there is even a dedicated group of packages, Bioconductor, for this purpose. However, to exploit HPC systems, R must be able to utilise the multiple processors available on these systems. There are existing modules that enable R to use multiple processors, but these are either difficult to use for the HPC novice or cannot be used to solve certain classes of problems. A method of exploiting HPC systems, using R, but without recourse to mastering parallel programming paradigms is therefore necessary to analyse genomic data to its fullest. RESULTS: We have designed and built a prototype framework that allows the addition of parallelised functions to R to enable the easy exploitation of HPC systems. The Simple Parallel R INTerface (SPRINT) is a wrapper around such parallelised functions. Their use requires very little modification to existing sequential R scripts and no expertise in parallel computing. As an example we created a function that carries out the computation of a pairwise calculated correlation matrix. This performs well with SPRINT. When executed using SPRINT on an HPC resource of eight processors this computation reduces by more than three times the time R takes to complete it on one processor. CONCLUSION: SPRINT allows the biostatistician to concentrate on the research problems rather than the computation, while still allowing exploitation of HPC systems. It is easy to use and with further development will become more useful as more functions are added to the framework.\",\"journal\":\"BMC bioinformatics\",\"volume\":\"9\",\"pages\":\"558\",\"month\":\"December\",\"year\":\"2008\",\"issn\":\"1471-2105\",\"pmid\":\"19114001\",\"doi\":\"10.1186/1471-2105-9-558\",\"pmc\":\"PMC2628907\",\"bibtex\":\"@ARTICLE{Hill2008-hg,\\n  title       = \\\"{SPRINT: a new parallel framework for R}\\\",\\n  author      = \\\"Hill, Jon and Hambley, Matthew and Forster, Thorsten and\\n                 Mewissen, Muriel and Sloan, Terence M and Scharinger, Florian\\n                 and Trew, Arthur and Ghazal, Peter\\\",\\n  affiliation = \\\"EPCC, The University of Edinburgh, James Clerk Maxwell\\n                 Building, Mayfield Road, Edinburgh EH93JZ, UK.\\n                 j.hill@epcc.ed.ac.uk\\\",\\n  abstract    = \\\"BACKGROUND: Microarray analysis allows the simultaneous\\n                 measurement of thousands to millions of genes or sequences\\n                 across tens to thousands of different samples. The analysis of\\n                 the resulting data tests the limits of existing bioinformatics\\n                 computing infrastructure. A solution to this issue is to use\\n                 High Performance Computing (HPC) systems, which contain many\\n                 processors and more memory than desktop computer systems. Many\\n                 biostatisticians use R to process the data gleaned from\\n                 microarray analysis and there is even a dedicated group of\\n                 packages, Bioconductor, for this purpose. However, to exploit\\n                 HPC systems, R must be able to utilise the multiple processors\\n                 available on these systems. There are existing modules that\\n                 enable R to use multiple processors, but these are either\\n                 difficult to use for the HPC novice or cannot be used to solve\\n                 certain classes of problems. A method of exploiting HPC\\n                 systems, using R, but without recourse to mastering parallel\\n                 programming paradigms is therefore necessary to analyse\\n                 genomic data to its fullest. RESULTS: We have designed and\\n                 built a prototype framework that allows the addition of\\n                 parallelised functions to R to enable the easy exploitation of\\n                 HPC systems. The Simple Parallel R INTerface (SPRINT) is a\\n                 wrapper around such parallelised functions. Their use requires\\n                 very little modification to existing sequential R scripts and\\n                 no expertise in parallel computing. As an example we created a\\n                 function that carries out the computation of a pairwise\\n                 calculated correlation matrix. This performs well with SPRINT.\\n                 When executed using SPRINT on an HPC resource of eight\\n                 processors this computation reduces by more than three times\\n                 the time R takes to complete it on one processor. CONCLUSION:\\n                 SPRINT allows the biostatistician to concentrate on the\\n                 research problems rather than the computation, while still\\n                 allowing exploitation of HPC systems. It is easy to use and\\n                 with further development will become more useful as more\\n                 functions are added to the framework.\\\",\\n  journal     = \\\"BMC bioinformatics\\\",\\n  volume      =  9,\\n  pages       = \\\"558\\\",\\n  month       =  dec,\\n  year        =  2008,\\n  issn        = \\\"1471-2105\\\",\\n  pmid        = \\\"19114001\\\",\\n  doi         = \\\"10.1186/1471-2105-9-558\\\",\\n  pmc         = \\\"PMC2628907\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Hambley, M.\",\"Forster, T.\",\"Mewissen, M.\",\"Sloan, T. M\",\"Scharinger, F.\",\"Trew, A.\",\"Ghazal, P.\"],\"key\":\"Hill2008-hg\",\"id\":\"Hill2008-hg\",\"bibbaseid\":\"hill-hambley-forster-mewissen-sloan-scharinger-trew-ghazal-sprintanewparallelframeworkforr-2008\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"The supertree tool kit\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Davis\"],\"firstnames\":[\"Katie\",\"E\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]}],\"affiliation\":\"Faculty of Biomedical & Life Sciences, Division of Ecology & Evolutionary Biology, Graham Kerr Building, University of Glasgow, Glasgow, G12 8QQ, UK. k.davis@udcf.gla.ac.uk.\",\"abstract\":\"BACKGROUND: Large phylogenies are crucial for many areas of biological research. One method of creating such large phylogenies is the supertree method, but creating supertrees containing thousands of taxa, and hence providing a comprehensive phylogeny, requires hundred or even thousands of source input trees. Managing and processing these data in a systematic and error-free manner is challenging and will become even more so as supertrees contain ever increasing numbers of taxa. Protocols for processing input source phylogenies have been proposed to ensure data quality, but no robust software implementations of these protocols as yet exist. FINDINGS: The aim of the Supertree Tool Kit (STK) is to aid in the collection, storage and processing of input source trees for use in supertree analysis. It is therefore invaluable when creating supertrees containing thousands of taxa and hundreds of source trees. The STK is a Perl module with executable scripts to carry out various steps in the processing protocols. In order to aid processing we have added meta-data, via XML, to each tree which contains information such as the bibliographic source information for the tree and how the data were derived, for instance the character data used to carry out the original analysis. These data are essential parts of previously proposed protocols. CONCLUSIONS: The STK is a bioinformatics tool designed to make it easier to process source phylogenies for inclusion in supertree analysis from hundreds or thousands of input source trees, whilst reducing potential errors and enabling easy sharing of such datasets. It has been successfully used to create the largest known supertree to date containing over 5000 taxa from over 700 source phylogenies.\",\"journal\":\"BMC research notes\",\"volume\":\"3\",\"pages\":\"95\",\"month\":\"April\",\"year\":\"2010\",\"issn\":\"1756-0500\",\"pmid\":\"20377857\",\"doi\":\"10.1186/1756-0500-3-95\",\"pmc\":\"PMC2872655\",\"bibtex\":\"@ARTICLE{Davis2010-hn,\\n  title       = \\\"{The supertree tool kit}\\\",\\n  author      = \\\"Davis, Katie E and Hill, Jon\\\",\\n  affiliation = \\\"Faculty of Biomedical \\\\& Life Sciences, Division of Ecology \\\\&\\n                 Evolutionary Biology, Graham Kerr Building, University of\\n                 Glasgow, Glasgow, G12 8QQ, UK. k.davis@udcf.gla.ac.uk.\\\",\\n  abstract    = \\\"BACKGROUND: Large phylogenies are crucial for many areas of\\n                 biological research. One method of creating such large\\n                 phylogenies is the supertree method, but creating supertrees\\n                 containing thousands of taxa, and hence providing a\\n                 comprehensive phylogeny, requires hundred or even thousands of\\n                 source input trees. Managing and processing these data in a\\n                 systematic and error-free manner is challenging and will\\n                 become even more so as supertrees contain ever increasing\\n                 numbers of taxa. Protocols for processing input source\\n                 phylogenies have been proposed to ensure data quality, but no\\n                 robust software implementations of these protocols as yet\\n                 exist. FINDINGS: The aim of the Supertree Tool Kit (STK) is to\\n                 aid in the collection, storage and processing of input source\\n                 trees for use in supertree analysis. It is therefore\\n                 invaluable when creating supertrees containing thousands of\\n                 taxa and hundreds of source trees. The STK is a Perl module\\n                 with executable scripts to carry out various steps in the\\n                 processing protocols. In order to aid processing we have added\\n                 meta-data, via XML, to each tree which contains information\\n                 such as the bibliographic source information for the tree and\\n                 how the data were derived, for instance the character data\\n                 used to carry out the original analysis. These data are\\n                 essential parts of previously proposed protocols. CONCLUSIONS:\\n                 The STK is a bioinformatics tool designed to make it easier to\\n                 process source phylogenies for inclusion in supertree analysis\\n                 from hundreds or thousands of input source trees, whilst\\n                 reducing potential errors and enabling easy sharing of such\\n                 datasets. It has been successfully used to create the largest\\n                 known supertree to date containing over 5000 taxa from over\\n                 700 source phylogenies.\\\",\\n  journal     = \\\"BMC research notes\\\",\\n  volume      =  3,\\n  pages       = \\\"95\\\",\\n  month       =  apr,\\n  year        =  2010,\\n  issn        = \\\"1756-0500\\\",\\n  pmid        = \\\"20377857\\\",\\n  doi         = \\\"10.1186/1756-0500-3-95\\\",\\n  pmc         = \\\"PMC2872655\\\"\\n}\\n\\n\",\"author_short\":[\"Davis, K. E\",\"Hill, J.\"],\"key\":\"Davis2010-hn\",\"id\":\"Davis2010-hn\",\"bibbaseid\":\"davis-hill-thesupertreetoolkit-2010\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"On the performance of a generic length scale turbulence model within an adaptive finite element ocean model\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"J.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Piggott\"],\"firstnames\":[\"M.D.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Ham\"],\"firstnames\":[\"D.A.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Popova\"],\"firstnames\":[\"E.E.\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Srokosz\"],\"firstnames\":[\"M.A.\"],\"suffixes\":[]}],\"abstract\":\"Research into the use of unstructured mesh methods for ocean modelling has been growing steadily in the last few years. One advanta ge of using unstructured meshes is that one can concentrate resolution where it is needed. In addition, dynamic adaptive mesh optimisation (DAM O) strategies allow resolution to be concentrated when this is required. Despite the advantage that DAMO gives in terms of improving the spatia l resolution where and when required, small-scale turbulence in the oceans still requires parameterisation. A two-equation, generic length scal e (GLS) turbulence model (one equation for turbulent kinetic energy and another for a generic turbulence length-scale quantity) adds this param eterisation and can be used in conjunction with adaptive mesh techniques. In this paper, an implementation of the GLS turbulence parameterisati on is detailed in a non-hydrostatic, finite-element, unstructured mesh ocean model, Fluidity-ICOM. The implementation is validated by comparing to both a laboratory-scale experiment and real-world observations, on both fixed and adaptive meshes. The model performs well, matching labora tory and observed data, with resolution being adjusted as necessary by DAMO. Flexibility in the prognostic fields used to construct the error m etric used in DAMO is required to ensure best performance. Moreover, the adaptive mesh models perform as well as fixed mesh models in terms of root mean square error to observation or theoretical mixed layer depths, but uses fewer elements and hence has a reduced computational cost.\",\"journal\":\"Ocean Modelling\",\"volume\":\"56\",\"pages\":\"1–15\",\"month\":\"July\",\"year\":\"2012\",\"keywords\":\"adaptive mesh,finite element,turbulence parameterisation,unstructured mesh\",\"issn\":\"14635003\",\"doi\":\"10.1016/j.ocemod.2012.07.003\",\"bibtex\":\"@ARTICLE{Hill2012-kf,\\n  title    = \\\"{On the performance of a generic length scale turbulence model\\n              within an adaptive finite element ocean model}\\\",\\n  author   = \\\"Hill, J. and Piggott, M.D. and Ham, D.A. and Popova, E.E. and\\n              Srokosz, M.A.\\\",\\n  abstract = \\\"Research into the use of unstructured mesh methods for ocean\\n              modelling has been growing steadily in the last few years. One\\n              advanta ge of using unstructured meshes is that one can\\n              concentrate resolution where it is needed. In addition, dynamic\\n              adaptive mesh optimisation (DAM O) strategies allow resolution to\\n              be concentrated when this is required. Despite the advantage that\\n              DAMO gives in terms of improving the spatia l resolution where\\n              and when required, small-scale turbulence in the oceans still\\n              requires parameterisation. A two-equation, generic length scal e\\n              (GLS) turbulence model (one equation for turbulent kinetic energy\\n              and another for a generic turbulence length-scale quantity) adds\\n              this param eterisation and can be used in conjunction with\\n              adaptive mesh techniques. In this paper, an implementation of the\\n              GLS turbulence parameterisati on is detailed in a\\n              non-hydrostatic, finite-element, unstructured mesh ocean model,\\n              Fluidity-ICOM. The implementation is validated by comparing to\\n              both a laboratory-scale experiment and real-world observations,\\n              on both fixed and adaptive meshes. The model performs well,\\n              matching labora tory and observed data, with resolution being\\n              adjusted as necessary by DAMO. Flexibility in the prognostic\\n              fields used to construct the error m etric used in DAMO is\\n              required to ensure best performance. Moreover, the adaptive mesh\\n              models perform as well as fixed mesh models in terms of root mean\\n              square error to observation or theoretical mixed layer depths,\\n              but uses fewer elements and hence has a reduced computational\\n              cost.\\\",\\n  journal  = \\\"Ocean Modelling\\\",\\n  volume   =  56,\\n  pages    = \\\"1--15\\\",\\n  month    =  jul,\\n  year     =  2012,\\n  keywords = \\\"adaptive mesh,finite element,turbulence\\n              parameterisation,unstructured mesh\\\",\\n  issn     = \\\"14635003\\\",\\n  doi      = \\\"10.1016/j.ocemod.2012.07.003\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Piggott, M.\",\"Ham, D.\",\"Popova, E.\",\"Srokosz, M.\"],\"key\":\"Hill2012-kf\",\"id\":\"Hill2012-kf\",\"bibbaseid\":\"hill-piggott-ham-popova-srokosz-ontheperformanceofagenericlengthscaleturbulencemodelwithinanadaptivefiniteelementoceanmodel-2012\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"adaptive mesh\",\"finite element\",\"turbulence parameterisation\",\"unstructured mesh\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Preservation of forcing signals in shallow water carbonate sediments\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wood\"],\"firstnames\":[\"Rachel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Curtis\"],\"firstnames\":[\"Andrew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tetzlaff\"],\"firstnames\":[\"Daniel\",\"M.\"],\"suffixes\":[]}],\"abstract\":\"No consensus has been reached on whether the metre-scale cycles that commonly occur in peritidal carbonates are predominately a product of external relative sea-level variations (allocycles) or an intrinsic property of carbonate production generated via the interaction of non-linear processes (autocycles). For any forcing signal such as eustatic sea-level change, to be detectable in stratigraphy its effects must be preserved. Here, a deterministic, three-dimensional geological process model is used to explore how such cycles are preserved in the geological record in the presence of autocyclic processes. Each simulation produced cycle thickness distributions that are statistically indistinguishable from a theoretical Poisson process, regardless of whether auto- or allo-cycles dominated. Spectral analysis of depositional time series constructed from idealised geological sections showed that all detectable signals occurred within the Milankovitch forcing frequency bands, even when no Milankovitch forcing was present. Thus, it is deduced that from any geological section alone, external forcing signals are detectable but are not distinguishable from autocyclically produced signals. Interestingly, there is no correlation between the percentage of sediment preserved and the accuracy with which signals are detectable in the preserved sediment: in some model realisations, even with preservation as low as 40%, the correct forcing signal can be detected accurately while, conversely, sections with preservation as high as 90% can have poor signal preservation. The reverse can also be true in other models. It is therefore concluded that distinguishing allocyclic and autocyclic forcing in shallow marine or peritidal carbonate successions is likely to be extremely difficult except in cases of extraordinary sedimentary preservation and dating accuracy.\",\"journal\":\"Sedimentary geology\",\"volume\":\"275-276\",\"number\":\"1\",\"pages\":\"79–92\",\"month\":\"July\",\"year\":\"2012\",\"keywords\":\"carbonate sedimentation,cyclicity,forward modelling,preservation,spectral analysis\",\"issn\":\"0037-0738\",\"doi\":\"10.1016/j.sedgeo.2012.07.017\",\"bibtex\":\"@ARTICLE{Hill2012-gg,\\n  title    = \\\"{Preservation of forcing signals in shallow water carbonate\\n              sediments}\\\",\\n  author   = \\\"Hill, Jon and Wood, Rachel and Curtis, Andrew and Tetzlaff,\\n              Daniel M.\\\",\\n  abstract = \\\"No consensus has been reached on whether the metre-scale cycles\\n              that commonly occur in peritidal carbonates are predominately a\\n              product of external relative sea-level variations (allocycles) or\\n              an intrinsic property of carbonate production generated via the\\n              interaction of non-linear processes (autocycles). For any forcing\\n              signal such as eustatic sea-level change, to be detectable in\\n              stratigraphy its effects must be preserved. Here, a\\n              deterministic, three-dimensional geological process model is used\\n              to explore how such cycles are preserved in the geological record\\n              in the presence of autocyclic processes. Each simulation produced\\n              cycle thickness distributions that are statistically\\n              indistinguishable from a theoretical Poisson process, regardless\\n              of whether auto- or allo-cycles dominated. Spectral analysis of\\n              depositional time series constructed from idealised geological\\n              sections showed that all detectable signals occurred within the\\n              Milankovitch forcing frequency bands, even when no Milankovitch\\n              forcing was present. Thus, it is deduced that from any geological\\n              section alone, external forcing signals are detectable but are\\n              not distinguishable from autocyclically produced signals.\\n              Interestingly, there is no correlation between the percentage of\\n              sediment preserved and the accuracy with which signals are\\n              detectable in the preserved sediment: in some model realisations,\\n              even with preservation as low as 40\\\\%, the correct forcing signal\\n              can be detected accurately while, conversely, sections with\\n              preservation as high as 90\\\\% can have poor signal preservation.\\n              The reverse can also be true in other models. It is therefore\\n              concluded that distinguishing allocyclic and autocyclic forcing\\n              in shallow marine or peritidal carbonate successions is likely to\\n              be extremely difficult except in cases of extraordinary\\n              sedimentary preservation and dating accuracy.\\\",\\n  journal  = \\\"Sedimentary geology\\\",\\n  volume   = \\\"275-276\\\",\\n  number   =  1,\\n  pages    = \\\"79--92\\\",\\n  month    =  jul,\\n  year     =  2012,\\n  keywords = \\\"carbonate sedimentation,cyclicity,forward\\n              modelling,preservation,spectral analysis\\\",\\n  issn     = \\\"0037-0738\\\",\\n  doi      = \\\"10.1016/j.sedgeo.2012.07.017\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Wood, R.\",\"Curtis, A.\",\"Tetzlaff, D. M.\"],\"key\":\"Hill2012-gg\",\"id\":\"Hill2012-gg\",\"bibbaseid\":\"hill-wood-curtis-tetzlaff-preservationofforcingsignalsinshallowwatercarbonatesediments-2012\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"carbonate sedimentation\",\"cyclicity\",\"forward modelling\",\"preservation\",\"spectral analysis\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"article\",\"type\":\"article\",\"title\":\"Modeling shallow marine carbonate depositional systems\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tetzlaff\"],\"firstnames\":[\"Daniel\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Curtis\"],\"firstnames\":[\"Andrew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wood\"],\"firstnames\":[\"Rachel\"],\"suffixes\":[]}],\"abstract\":\"Geological Process Models (GPMs) have been used in the past to simulate the distinctive stratigraphies formed in carbonate sediments, and to explore the interaction of controls that produce heterogeneity. Previous GPMs have only indirectly included the supersaturation of calcium carbonate in seawater, a key physicochemical control on carbonate production in reef and lagoon environments, by modifying production rates based on the distance from open marine sources. We here use the residence time of water in the lagoon and reef areas as a proxy for the supersaturation state of carbonate in a new process model, Carbonate GPM. Residence times in the model are calculated using a particle-tracking algorithm. Carbonate production is also controlled by water depth and wave power dissipation. Once deposited, sediment can be eroded, transported and re-deposited via both advective and diffusive processes. We show that using residence time as a control on production might explain the formation of non-ordered, three-dimensional carbonate stratigraphies by lateral shifts in the locus of carbonate deposition on timescales comparable to so-called 5th-order sea-level oscillations. We also show that representing supersaturation as a function of distance from open marine sources, as in previous models, cannot correctly predict the supersaturation distribution over a lagoon due to the intricacies of the flow regime.\",\"journal\":\"Computers & geosciences\",\"volume\":\"35\",\"number\":\"9\",\"pages\":\"1862–1874\",\"month\":\"September\",\"year\":\"2009\",\"keywords\":\"Carbonate\",\"issn\":\"0098-3004\",\"doi\":\"10.1016/j.cageo.2008.12.006\",\"bibtex\":\"@ARTICLE{Hill2009-he,\\n  title    = \\\"{Modeling shallow marine carbonate depositional systems}\\\",\\n  author   = \\\"Hill, Jon and Tetzlaff, Daniel and Curtis, Andrew and Wood,\\n              Rachel\\\",\\n  abstract = \\\"Geological Process Models (GPMs) have been used in the past to\\n              simulate the distinctive stratigraphies formed in carbonate\\n              sediments, and to explore the interaction of controls that\\n              produce heterogeneity. Previous GPMs have only indirectly\\n              included the supersaturation of calcium carbonate in seawater, a\\n              key physicochemical control on carbonate production in reef and\\n              lagoon environments, by modifying production rates based on the\\n              distance from open marine sources. We here use the residence time\\n              of water in the lagoon and reef areas as a proxy for the\\n              supersaturation state of carbonate in a new process model,\\n              Carbonate GPM. Residence times in the model are calculated using\\n              a particle-tracking algorithm. Carbonate production is also\\n              controlled by water depth and wave power dissipation. Once\\n              deposited, sediment can be eroded, transported and re-deposited\\n              via both advective and diffusive processes. We show that using\\n              residence time as a control on production might explain the\\n              formation of non-ordered, three-dimensional carbonate\\n              stratigraphies by lateral shifts in the locus of carbonate\\n              deposition on timescales comparable to so-called 5th-order\\n              sea-level oscillations. We also show that representing\\n              supersaturation as a function of distance from open marine\\n              sources, as in previous models, cannot correctly predict the\\n              supersaturation distribution over a lagoon due to the intricacies\\n              of the flow regime.\\\",\\n  journal  = \\\"Computers \\\\& geosciences\\\",\\n  volume   =  35,\\n  number   =  9,\\n  pages    = \\\"1862--1874\\\",\\n  month    =  sep,\\n  year     =  2009,\\n  keywords = \\\"Carbonate\\\",\\n  issn     = \\\"0098-3004\\\",\\n  doi      = \\\"10.1016/j.cageo.2008.12.006\\\"\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Tetzlaff, D.\",\"Curtis, A.\",\"Wood, R.\"],\"key\":\"Hill2009-he\",\"id\":\"Hill2009-he\",\"bibbaseid\":\"hill-tetzlaff-curtis-wood-modelingshallowmarinecarbonatedepositionalsystems-2009\",\"role\":\"author\",\"urls\":{},\"keyword\":[\"Carbonate\"],\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"},{\"bibtype\":\"inproceedings\",\"type\":\"inproceedings\",\"title\":\"Complexity in Carbonate Systems\",\"booktitle\":\"GIS and Spatial Analysis, Vol 1 and 2\",\"author\":[{\"propositions\":[],\"lastnames\":[\"Hill\"],\"firstnames\":[\"Jon\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Curtis\"],\"firstnames\":[\"Andrew\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Wood\"],\"firstnames\":[\"R\",\"A\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"Tetzlaff\"],\"firstnames\":[\"Daniel\",\"M\"],\"suffixes\":[]}],\"editor\":[{\"propositions\":[],\"lastnames\":[\"Cheng\"],\"firstnames\":[\"Q\"],\"suffixes\":[]},{\"propositions\":[],\"lastnames\":[\"BonhamCarter\"],\"firstnames\":[\"G\"],\"suffixes\":[]}],\"abstract\":\"Carbonate sediments are often highly heterogeneous due to the numerous factors that control deposition. Several of these processes are non-linear, so that depositional stratigraphies may consequently form complicated, perhaps even chaotic, geometries. Forward modelling can help us to understand the interactions between the various processes involved. Here we present a new 3D forward model of carbonate production and deposition, which is specifically designed to test the interactions between the three main depositional controls: light intensity, wave power and carbonate supersaturation, the latter of which is unique to this model. The results of this analysis suggest that it may be impossible to predict in detail the stratigraphy of carbonate deposits due to its super-sensitivity to initial conditions or controlling parameters. This reinforces the conclusions reached using previous process models. However, unlike previous models, our model does not explicitly include nonlinear biological interactions as a control. Instead it shows that similar supersensitive behaviour may originate from physicochemical processes alone.\",\"pages\":\"1141–1146\",\"year\":\"2005\",\"bibtex\":\"@INPROCEEDINGS{Hill2005-fe,\\n  title     = \\\"{Complexity in Carbonate Systems}\\\",\\n  booktitle = \\\"{GIS and Spatial Analysis, Vol 1 and 2}\\\",\\n  author    = \\\"Hill, Jon and Curtis, Andrew and Wood, R A and Tetzlaff, Daniel\\n               M\\\",\\n  editor    = \\\"Cheng, Q and BonhamCarter, G\\\",\\n  abstract  = \\\"Carbonate sediments are often highly heterogeneous due to the\\n               numerous factors that control deposition. Several of these\\n               processes are non-linear, so that depositional stratigraphies\\n               may consequently form complicated, perhaps even chaotic,\\n               geometries. Forward modelling can help us to understand the\\n               interactions between the various processes involved. Here we\\n               present a new 3D forward model of carbonate production and\\n               deposition, which is specifically designed to test the\\n               interactions between the three main depositional controls: light\\n               intensity, wave power and carbonate supersaturation, the latter\\n               of which is unique to this model. The results of this analysis\\n               suggest that it may be impossible to predict in detail the\\n               stratigraphy of carbonate deposits due to its super-sensitivity\\n               to initial conditions or controlling parameters. This reinforces\\n               the conclusions reached using previous process models. However,\\n               unlike previous models, our model does not explicitly include\\n               nonlinear biological interactions as a control. Instead it shows\\n               that similar supersensitive behaviour may originate from\\n               physicochemical processes alone.\\\",\\n  pages     = \\\"1141--1146\\\",\\n  year      =  2005\\n}\\n\\n\",\"author_short\":[\"Hill, J.\",\"Curtis, A.\",\"Wood, R A\",\"Tetzlaff, D. M\"],\"editor_short\":[\"Cheng, Q\",\"BonhamCarter, G\"],\"key\":\"Hill2005-fe\",\"id\":\"Hill2005-fe\",\"bibbaseid\":\"hill-curtis-wood-tetzlaff-complexityincarbonatesystems-2005\",\"role\":\"author\",\"urls\":{},\"metadata\":{\"authorlinks\":{}},\"downloads\":0,\"html\":\"\"}],\n      metadata: {\"authorlinks\":{}},\n      ownerID: undefined\n    };\n  </script>\n\n  <script type=\"text/javascript\">\n  var site$;\n  if (typeof $ != 'undefined') {\n    console.log('existing jquery: storing and then restoring');\n    site$ = $;\n    $ = null;\n  }\n  </script>\n\n  <script src=\"https://ajax.googleapis.com/ajax/libs/jquery/2.2.4/jquery.min.js\">\n  </script>\n  <script type=\"text/javascript\">\n  if (site$) {\n    console.log('existing jquery: avoiding conflict and restoring');\n    bb$ = $.noConflict(true);\n    $ = site$;\n  } else {\n    bb$ = $;\n  }\n  </script>\n\n  <script src=\"//bibbase.org/js/bibbase.min.js\"\n          type=\"text/javascript\">\n  </script>\n\n  <script type=\"text/javascript\"\n          src=\"https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML\">\n  </script>\n  <script type=\"text/x-mathjax-config\">\n    MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\\\(','\\\\)']]},\n                        skipTags: [\"body\"],\n                        processClass: \"bibbase_paper\"});\n  </script>\n\n  <style>\n  @media print {\n    .dontprint {\n        display: none !important;\n    }\n\n  .bibbase_group {\n    background-color: #E0E0E0;\n    font-style: italic;\n    font-size: larger;\n    text-shadow: 0px 0px 3px #FFFFFF;\n    border-radius: 4px 4px 4px 4px;\n    -moz-border-radius: 4px 4px 4px 4px;\n    -webkit-border-radius: 4px;\n    padding: 5px 40px 5px;\n    margin-top: 10px;\n    margin-bottom: 5px;\n    cursor: pointer;\n  }\n\n  .bibbase_paper {\n    margin-bottom: 5px;\n  }\n\n  }\n  </style>\n\n  \n  <div style=\"float: right; margin-right: 10px; margin-top: 10px; text-align: right; font-size: 12px\">\n    generated by\n    <a href=\"//bibbase.org\"\n       onclick=\"trackOutboundLink('bibbase', 'logo clicked', window.location.href, '//bibbase.org'); return false;\">\n      <img src=\"//bibbase.org/img/logo.svg\"\n           style=\"vertical-align: middle; margin-left: 3px; height: 16px;\"/\n           alt=\"bibbase.org\"\n           title=\"BibBase – The easiest way to maintain your publications page.\"\n        ></a>\n    \n  </div>\n  \n\n  <div id=\"bibbase_header\" class=\"dontprint\" style=\"\">\n\n    <ul class=\"nav nav-pills\" style=\"margin: 0px;\">\n\n      <li class=\"dropdown\" id=\"groupby_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         href=\"#\">\n          Group by\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li class=\"groupby year\"><a onclick=\"groupby('year')\">\n            Year</a>\n        </li>\n        <li class=\"groupby author\"><a onclick=\"groupby('author_short')\">\n            Author</a>\n        </li>\n        <li class=\"groupby type\"><a onclick=\"groupby('type')\">\n            Type</a>\n        </li>\n        <li class=\"groupby keyword\"><a onclick=\"groupby('keyword')\">\n            Keyword</a>\n        </li>\n        <li class=\"groupby downloads\"><a onclick=\"groupby('downloads')\">\n            Downloads</a>\n        </li>\n      </ul>\n      </li>\n\n\n      <li class=\"dropdown\" id=\"menu_dropdown\">\n      <a class=\"dropdown-toggle\"\n         data-toggle=\"dropdown\"\n         href=\"#\" alt=\"controls\">\n          <i class=\"fa fa-reorder\" alt=\"controls\"></i>\n          <b class=\"caret\"></b>\n      </a>\n      <ul class=\"dropdown-menu\">\n        <li>\n          <a onclick=\"toggleAll()\">\n            <i class=\"fa fa-chevron-down fa-fw\"></i> Expand/Collapse All\n          </a>\n        </li>\n        <li>\n          <a download=\"publications.bib\" href=\"data:text/bibtex;base64,@ARTICLE{Woodroffe2023-cp,
  title     = "{On the varied impact of the Storegga tsunami in northwest
               Scotland}",
  author    = "Woodroffe, Sarah A and Hill, Jon and Bustamante-Fernandez,
               Emmanuel and Lloyd, Jerry M and Luff, Jake and Richards, Sarah
               and Shennan, Ian",
  journal   = "Journal of Quaternary Science",
  publisher = "Wiley",
  month     =  may,
  year      =  2023,
  copyright = "http://creativecommons.org/licenses/by/4.0/",
  language  = "en",
  issn      = "0267-8179, 1099-1417",
  doi       = "10.1002/jqs.3539"
}

% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Hill2023-se,
  title     = "{Resolving tsunami wave dynamics: integrating sedimentology and
               numerical modelling}",
  author    = "Hill, Jon and Rush, Graham and Peakall, Jeff and Johnson,
               Michael and Hodson, Luke and Barlow, Natasha L M and Bowman,
               Elisabeth T and Gehrels, W Roland and Hodgson, David M and
               Kesserwani, Georges",
  journal   = "The depositional record",
  publisher = "Wiley",
  month     =  aug,
  year      =  2023,
  copyright = "http://creativecommons.org/licenses/by/4.0/",
  language  = "en",
  issn      = "2055-4877",
  doi       = "10.1002/dep2.247"
}




@ARTICLE{Lee2022-sx,
  title    = "{Tidal dynamics drive ooid formation in the Capricorn Channel
              since the Last Glacial Maximum}",
  author   = "Lee, Katherine C and Webster, Jody M and Salles, Tristan and
              Mawson, Eleanor E and Hill, Jon",
  journal  = "Marine geology",
  pages    = "106944",
  month    =  nov,
  year     =  2022,
  keywords = "Numerical model; Palaeotides; Sediment; Great Barrier Reef; Ooids",
  issn     = "0025-3227",
  doi      = "10.1016/j.margeo.2022.106944"
}




@article{HILL2022107719,
title = {Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea},
journal = {Quaternary Science Reviews},
volume = {293},
pages = {107719},
year = {2022},
issn = {0277-3791},
doi = {https://doi.org/10.1016/j.quascirev.2022.107719},
url = {https://www.sciencedirect.com/science/article/pii/S027737912200350X},
author = {Jon Hill and Alexandros Avdis and Geoff Bailey and Kurt Lambeck},
keywords = {Sea-level change, Shoreline reconstruction, Tidal modelling, Simulation, Hominin dispersal},
}



@ARTICLE{Mawson2022-ni,
  title     = "{Sea level rise and the Great Barrier Reef the future
               implications on reef tidal dynamics}",
  author    = "Mawson, Eleanor E and Lee, Katherine C and Hill, Jon",
  journal   = "Journal of Geophysical Research, C: Oceans",
  publisher = "American Geophysical Union (AGU)",
  year      =  2022,
  language  = "en",
  issn      = "2169-9275, 2169-9291",
  doi       = "10.1029/2021jc017823"
}




@article{COLLINS2021103827,
title = {Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling},
journal = {Earth-Science Reviews},
volume = {223},
pages = {103827},
year = {2021},
issn = {0012-8252},
doi = {https://doi.org/10.1016/j.earscirev.2021.103827},
url = {https://www.sciencedirect.com/science/article/pii/S0012825221003287},
author = {Daniel S. Collins and Alexandros Avdis and Martin R. Wells and Christopher D. Dean and Andrew J. Mitchell and Peter A. Allison and Howard D. Johnson and Gary J. Hampson and Jon Hill and Matthew D. Piggott},
keywords = {Shoreline, Shelf, Delta, Wave, Tide, Fluvial, Process regime, Numerical modelling, Palaeotidal},

}


@ARTICLE{Bateman2021-mj,
  title     = "{Detailing the impact of the Storegga Tsunami at Montrose,
               Scotland}",
  author    = "Bateman, Mark D and Kinnaird, Tim C and Hill, Jon and Ashurst,
               Robert A and Mohan, Jenna and Bateman, Rebecca B I and Robinson,
               Ruth",
  journal   = "Boreas",
  publisher = "Wiley",
  number    = "bor.12532",
  month     =  jun,
  year      =  2021,
  language  = "en",
  issn      = "0300-9483, 1502-3885",
  doi       = "10.1111/bor.12532"
}



@ARTICLE{Talavera2021-lw,
  title     = "{Morphodynamic Controls for Growth and Evolution of a Rubble
               Coral Island}",
  author    = "Talavera, Lara and Vila-Concejo, Ana and Webster, Jody M and
               Smith, Courtney and Duce, Stephanie and Fellowes, Thomas E and
               Salles, Tristan and Harris, Daniel and Hill, Jon and Figueira,
               Will and Hacker, J{\"o}rg",
  journal   = "Remote Sensing",
  publisher = "Multidisciplinary Digital Publishing Institute",
  volume    =  13,
  number    =  8,
  pages     = "1582",
  month     =  apr,
  year      =  2021,
  language  = "en",
  doi       = "10.3390/rs13081582"
}




@ARTICLE{Smith2020-om,
  title    = "{A new methodology for performing large scale simulations of
              tsunami generated by deformable submarine slides}",
  author   = "Smith, Rebecca C and Hill, Jon and Mouradian, Simon L and
              Piggott, Matthew D and Collins, Gareth S",
  journal  = "Ocean Modelling",
  pages    = "101674",
  month    =  jul,
  year     =  2020,
  keywords = "Submarine slide; Tsunami; Numerical modelling; Landslides",
  issn     = "1463-5003",
  doi      = "10.1016/j.ocemod.2020.101674"
}



@ARTICLE{Baker2020-ci,
  title    = "{Modelling the impact of tidal range energy on species communities}",
  author   = "Baker, Amy L and Craighead, Robert M and Jarvis, Emma J and
              Stenton, Harriett C and Angeloudis, Athanasios and Mackie, Lucas
              and Avdis, Alexandros and Piggott, Matthew D and Hill, Jon",
  journal  = "Ocean \& coastal management",
  volume   =  193,
  pages    = "105221",
  month    =  aug,
  year     =  2020,
  keywords = "Tidal energy; Environmental impacts; Modelling",
  issn     = "0964-5691",
  doi      = "10.1016/j.ocecoaman.2020.105221"
}





@ARTICLE{Dean2019-bp,
  title     = "{Aragonite bias exhibits systematic spatial variation in the Late
               Cretaceous Western Interior Seaway, North America}",
  author    = "Dean, Christopher D and Allison, Peter A and Hampson, Gary J and
               Hill, Jon",
  journal   = "Paleobiology",
  publisher = "Cambridge University Press",
  volume    =  45,
  number    =  4,
  pages     = "571--597",
  month     =  sep,
  year      =  2019,
  issn      = "0094-8373, 1938-5331",
  doi       = "10.1017/pab.2019.33"
}


% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Dawson2019-db,
  title    = "{Reconciling Storegga tsunami sedimentation patterns with modelled
              wave heights: A discussion from the Shetland Isles field
              laboratory}",
  author   = "Dawson, Alastair G and Dawson, Sue and Bondevik, Stein and Costa,
              Pedro J M and Hill, Jon and Stewart, Iain",
  journal  = "Sedimentology",
  month    =  jun,
  year     =  2020,
  issn     = "0037-0746",
  doi      = "10.1111/sed.12643"
}




@ARTICLE{Hill2019-nq,
  title    = "{HRDS: A Python package for hierarchical raster datasets}",
  author   = "Hill, Jon",
  abstract = "Software archive",
  journal  = "Journal of Open Source Software",
  volume   =  4,
  number   =  37,
  pages    = "1112",
  month    =  may,
  year     =  2019,
  issn     = "2475-9066",
  doi      = "10.21105/joss.01112"
}




@article{dufeu_2019,
author = {du Feu, R. J. and Funke, S. and Kramer, S. C. and Hill, J. and Piggott, M. D.},
title = {The trade-off between tidal-turbine array yield and environmental impact: a maximum entropy modelling approach},
journal = {Renewable Energy},
year = {2019}
}



@article{collins_2018,
author = {Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and Johnson, Howard D and Hill, Jon and Piggott, Matthew D},
title = {Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia},
journal = {Sedimentology},
volume = {0},
year = {2018},
keywords = {Embayments, numerical modelling, Oligocene–Miocene, preservation, shoreline–shelf, South China Sea, tidal amplification, tides},
doi = {10.1111/sed.12474},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/sed.12474},
abstract = {Abstract Numerical tidal modelling, when integrated with other geological datasets, can significantly inform the analysis of physical sedimentation processes and the depositional and preservational record of ancient tide-influenced shoreline–shelf systems. This is illustrated in the Oligo–Miocene of the South China Sea, which experienced significant changes in basin physiography and where tide-influenced, shoreline–shelf deposition is preserved in ca 10 sub-basins. Palaeogeographic reconstructions, palaeotidal modelling and regional sedimentary facies analysis have been integrated in order to evaluate the spatial–temporal evolution and physiographic controls on tidal sedimentation and preservation during the ca 25 Myr Oligo–Miocene record in the South China Sea. Palaeotidal modelling, using an astronomically-forced and global tidal model (Fluidity) at a maximum 10 km resolution, indicates that spring tides along Late Oligocene to Middle Miocene coastlines were predominantly mesotidal–macrotidal and capable of transporting sand, which reflects two main conditions: (i) increased tidal inflow through wider ocean connections to the Pacific Ocean; and (ii) tidal amplification resulting from constriction of the tidal wave in a ‘blind gulf’ type of basin morphology. Since the Middle to Late Miocene, a reduction in the amplitude and strength of tides in the South China Sea was mainly due to diminishing tidal inflow from the Pacific Ocean caused by the northward movement of the Philippines and Izu–Bonin–Mariana arc. Sensitivity tests to palaeogeographic and palaeobathymetric uncertainty indicate that regional-scale (hundreds to thousands of kilometres) palaeogeographic changes influencing tidal inflow versus outflow can override local-scale (one to hundreds of kilometres) changes to tidal resonance and convergence effects (funnelling and shoaling), such as shelf width and shoreline geometry. Palaeotidal model results compare favourably to the distribution and sedimentary fabric of Oligo–Miocene, tide-influenced, shoreline–shelf successions in peripheral South China Sea basins. However, the preservation potential of tidal deposits is lower in open coastline environments, probably due to enhanced reworking during storms and river floods. This article is protected by copyright. All rights reserved.}
}



@ARTICLE{Avdis2017-dv,
  title    = "{Efficient unstructured mesh generation for marine renewable
              energy applications}",
  author   = "Avdis, Alexandros and Candy, Adam S and Hill, Jon and Kramer,
              Stephan C and Piggott, Matthew D",
  abstract = "Abstract Renewable energy is the cornerstone of preventing
              dangerous climate change whilst maintaining a robust energy
              supply. Tidal energy will arguably play a critical role in the
              renewable energy portfolio as it is both predictable and
              reliable, and can be put in place across the globe. However,
              installation may impact the local and regional ecology via
              changes in tidal dynamics, sediment transport pathways or
              bathymetric changes. In order to mitigate these effects, tidal
              energy devices need to be modelled in order to predict
              hydrodynamic changes. Robust mesh generation is a fundamental
              component required for developing simulations with high accuracy.
              However, mesh generation for coastal domains can be an elaborate
              procedure. Here, we describe an approach combining mesh
              generators with Geographical Information Systems. We demonstrate
              robustness and efficiency by constructing a mesh with which to
              examine the potential environmental impact of a tidal turbine
              farm installation in the Orkney Islands. The mesh is then used
              with two well-validated ocean models, to compare their flow
              predictions with and without a turbine array. The results
              demonstrate that it is possible to create an easy-to-use tool to
              generate high-quality meshes for combined coastal engineering,
              here tidal turbines, and coastal ocean simulations.",
  journal  = "Renewable Energy",
  month    =  sep,
  year     =  2017,
  keywords = "Mesh generation; Geographical Information Systems; Research Data
              Management; Tidal turbine arrays; Renewable energy generation;
              Pentland Firth",
  issn     = "0960-1481",
  doi      = "10.1016/j.renene.2017.09.058"
}



@ARTICLE{Du_Feu2017-ra,
  title    = "{The trade-off between tidal-turbine array yield and impact on
              flow: A multi-objective optimisation problem}",
  author   = "du Feu, R J and Funke, S W and Kramer, S C and Culley, D M and
              Hill, J and Halpern, B S and {Piggott}",
  abstract = "This paper introduces a new approach for investigating trade-offs
              between different societal objectives in the design of
              tidal-turbine arrays. This method is demonstrated through the
              trade-off between the yield of an array, and the extent to which
              that array alters the flow. This is posed as a multi-objective
              optimisation problem, and the problem is investigated using the
              array layout optimisation tool OpenTidalFarm. Motivated by
              environmental concerns, OpenTidalFarm is adapted to not only
              maximise array yield but also to minimise the effect of the array
              upon the hydrodynamics of the region, specifically the flow
              velocity. A linear scalarisation of the multi-objective
              optimisation problem is solved for a series of different
              weightings of the two conflicting objectives. Two idealised test
              scenarios are evaluated and in each case a set of Pareto
              solutions is found. These arrays are assessed for the power they
              generate and the severity of change they cause in the flow
              velocity. These analyses allow for the identification of
              trade-offs between these two objectives, while the methods
              proposed can similarly be applied to the two key societal
              objectives of energy production and conservation, thus providing
              information that could be valuable to stakeholders and
              policymakers when making decisions on array design.",
  journal  = "Renewable Energy",
  volume   =  114,
  pages    = "1247--1257",
  month    =  dec,
  year     =  2017,
  keywords = "Marine renewable energy; Tidal turbines; Gradient-based
              optimisation; Multi-objective optimization; Pareto front;
              Environmental impact",
  issn     = "0960-1481",
  doi      = "10.1016/j.renene.2017.07.081"
}

% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Collins2017-vs,
  title     = "{Tidal dynamics and mangrove carbon sequestration during the
               Oligo--Miocene in the South China Sea}",
  author    = "Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and
               Johnson, Howard D and Hill, Jon and Piggott, Matthew D and Amir
               Hassan, Meor H and Damit, Abdul Razak",
  abstract  = "Mangroves are important carbon-rich biomes, but their long-term
               impact on the global carbon cycle is relatively unknown. Here,
               the authors show that the Oligo--Miocene mangroves in the South
               China Sea stored in excess of 4,000 Gt, demonstrating the
               long-term impact of mang…",
  journal   = "Nature communications",
  publisher = "Nature Publishing Group",
  volume    =  8,
  pages     = "ncomms15698",
  month     =  jun,
  year      =  2017,
  language  = "en",
  issn      = "2041-1723, 2041-1723",
  doi       = "10.1038/ncomms15698"
}



@ARTICLE{Davis2016-ah,
  title       = "{Global cooling as a driver of diversification in a major
                 marine clade}",
  author      = "Davis, Katie E and Hill, Jon and Astrop, Tim I and Wills,
                 Matthew A",
  affiliation = "Milner Centre for Evolution, Department of Biology and
                 Biochemistry, The University of Bath, Bath BA2 7AY, UK.
                 Environment Department, University of York, York YO10 5NG, UK.
                 Milner Centre for Evolution, Department of Biology and
                 Biochemistry, The University of Bath, Bath BA2 7AY, UK. Milner
                 Centre for Evolution, Department of Biology and Biochemistry,
                 The University of Bath, Bath BA2 7AY, UK.",
  abstract    = "Climate is a strong driver of global diversity and will become
                 increasingly important as human influences drive temperature
                 changes at unprecedented rates. Here we investigate
                 diversification and speciation trends within a diverse group
                 of aquatic crustaceans, the Anomura. We use a phylogenetic
                 framework to demonstrate that speciation rate is correlated
                 with global cooling across the entire tree, in contrast to
                 previous studies. Additionally, we find that marine clades
                 continue to show evidence of increased speciation rates with
                 cooler global temperatures, while the single freshwater clade
                 shows the opposite trend with speciation rates positively
                 correlated to global warming. Our findings suggest that both
                 global cooling and warming lead to diversification and that
                 habitat plays a role in the responses of species to climate
                 change. These results have important implications for our
                 understanding of how extant biota respond to ongoing climate
                 change and are of particular importance for conservation
                 planning of marine ecosystems.",
  journal     = "Nature communications",
  volume      =  7,
  pages       = "13003",
  month       =  oct,
  year        =  2016,
  language    = "en",
  issn        = "2041-1723",
  pmid        = "27701377",
  doi         = "10.1038/ncomms13003",
  pmc         = "PMC5059450"
}

% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Long2016-nj,
  title    = "{Lateglacial and Holocene relative sea-level changes and first
              evidence for the Storegga tsunami in Sutherland, Scotland}",
  author   = "Long, Antony J and Barlow, Natasha L M and Dawson, Sue and Hill,
              Jon and Innes, James B and Kelham, Catherine and Milne, Fraser D
              and Dawson, Alastair",
  abstract = "We reconstruct one of the longest relative sea-level (RSL)
              records in north-west Europe from the north coast of mainland
              Scotland, using data collected from three sites in Loch Eriboll
              (Sutherland) that we combine with other studies from the region.
              Following deglaciation, RSL fell from a Lateglacial highstand of
              +6−8 m OD (Ordnance Datum = ca. mean sea level) at ca. 15 k cal a
              BP to below present, then rose to an early Holocene highstand and
              remained at ca. +1 m OD between ca. 7 and 3 k cal a BP, before
              falling to present. We find no evidence for significant
              differential Holocene glacio-isostatic adjustment between sites
              on the north-west (Lochinver, Loch Laxford), north (Loch Eriboll)
              and north-east (Wick) coast of mainland Scotland. This suggests
              that the region was rapidly deglaciated and there was little
              difference in ice loads across the region. From one site at the
              head of Loch Eriboll we report the most westerly sedimentary
              evidence for the early Holocene Storegga tsunami on the Scottish
              mainland. The presence of the Storegga tsunami in Loch Eriboll is
              predicted by a tsunami wave model, which suggests that the
              tsunami impacted the entire north coast of Scotland and probably
              also the Atlantic coastline of north-west Scotland.",
  journal  = "Journal of Quaternary Science",
  volume   =  31,
  number   =  3,
  pages    = "239--255",
  month    =  apr,
  year     =  2016,
  keywords = "glacio-isostatic adjustment; relative sea level; Storegga
              landslide; Storegga tsunami; tsunami",
  issn     = "1099-1417",
  doi      = "10.1002/jqs.2862"
}



@ARTICLE{Smith2016-dl,
  title    = "{Comparing approaches for numerical modelling of tsunami
              generation by deformable submarine slides}",
  author   = "Smith, Rebecca C and Hill, Jon and Collins, Gareth S and Piggott,
              Matthew D and Kramer, Stephan C and Parkinson, Samuel D and
              Wilson, Cian",
  abstract = "Abstract Tsunami generated by submarine slides are arguably an
              under-considered risk in comparison to earthquake-generated
              tsunami. Numerical simulations of submarine slide-generated waves
              can be used to identify the important factors in determining wave
              characteristics. Here we use Fluidity, an open source finite
              element code, to simulate waves generated by deformable submarine
              slides. Fluidity uses flexible unstructured meshes combined with
              adaptivity which alters the mesh topology and resolution based on
              the simulation state, focussing or reducing resolution, when and
              where it is required. Fluidity also allows a number of different
              numerical approaches to be taken to simulate submarine slide
              deformation, free-surface representation, and wave generation
              within the same numerical framework. In this work we use a
              multi-material approach, considering either two materials (slide
              and water with a free surface) or three materials (slide, water
              and air), as well as a sediment model (sediment, water and free
              surface) approach. In all cases the slide is treated as a viscous
              fluid. Our results are shown to be consistent with laboratory
              experiments using a deformable submarine slide, and demonstrate
              good agreement when compared with other numerical models. The
              three different approaches for simulating submarine slide
              dynamics and tsunami wave generation produce similar waveforms
              and slide deformation geometries. However, each has its own
              merits depending on the application. Mesh adaptivity is shown to
              be able to reduce the computational cost without compromising the
              accuracy of results.",
  journal  = "Ocean Modelling",
  volume   =  100,
  pages    = "125--140",
  month    =  apr,
  year     =  2016,
  keywords = "Submarine Slide; Tsunami; Numerical Modelling; Validation;
              Adaptive Mesh",
  issn     = "1463-5003",
  doi      = "10.1016/j.ocemod.2016.02.007"
}

% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Webster2016-hp,
  title    = "{Submarine landslides on the Great Barrier Reef shelf edge and
              upper slope: A mechanism for generating tsunamis on the
              north-east Australian coast?}",
  author   = "Webster, Jody M and George, Nicholas P J and Beaman, Robin J and
              Hill, Jon and Puga-Bernab{\'e}u, {\'A}ngel and Hinestrosa,
              Gustavo and Abbey, Elizabeth A and Daniell, James J",
  abstract = "Abstract Shallow (< 200 m) submarine landslides influence margin
              evolution and can produce devastating tsunamis, yet little is
              known about these processes on mixed siliciclastic--carbonate
              margins. We have discovered seven landslides along the shelf edge
              and upper slope of the central Great Barrier Reef (GBR),
              Australia. The largest shelf edge landslide is investigated in
              detail and represents a collapse of a 7 km long section of the
              shelf edge at 90 m water depth with coarse debris deposited up to
              5.5 km away on the upper slope down to 250 m. The precise timing
              and triggering mechanisms are uncertain but available chronologic
              and seismic stratigraphic evidence suggests that this event
              occurred during the last deglacial sea-level rise between 20 and
              14 ka. Regional bathymetric data confirms that these shelf edge
              and upper slope slides are restricted to the central GBR between
              latitude 18° and 19°S, suggesting a spatial relationship between
              the extensive Burdekin paleo-fluvial/delta system and shallow
              landslide activity. This study highlights an important local
              mechanism for the generation of tsunamis on this margin type, and
              numerical simulations under present conditions confirm that a 2
              to 3 m tsunami wave could be produced locally. However, we
              consider that the risk of such slides, and their resulting
              tsunamis, to the modern coastline is negligible due to their
              relatively small size and the capacity of the GBR to dissipate
              the wave energy.",
  journal  = "Marine geology",
  volume   =  371,
  pages    = "120--129",
  month    =  jan,
  year     =  2016,
  keywords = "Great barrier reef; Continental shelf; Submarine landslides;
              Tsunami; Numerical model; Sea-level change",
  issn     = "0025-3227",
  doi      = "10.1016/j.margeo.2015.11.008"
}



@ARTICLE{Jordan2015-tr,
  title    = "{Not all aragonitic molluscs are missing: taphonomy and
              significance of a unique shelly lagerst{\"a}tte from the Jurassic
              of SW Britain}",
  author   = "Jordan, Naomi and Allison, Peter A and Hill, Jon and Sutton, Mark
              D",
  abstract = "The Blue Lias Formation at Lyme Regis (Dorset, UK) includes an
              exceptional pavement of abundant large ammonites that accumulated
              during a period of profound sedimentary condensation. Ammonites
              were originally composed of aragonite, an unstable polymorph of
              calcium carbonate, and such fossils are typically prone to
              dissolution; the occurrence of a rich association of aragonitic
              shells in a condensed bed is highly unusual. Aragonite
              dissolution occurs when pore-water pH is reduced by the
              oxidization of hydrogen sulphide close to the sediment-water
              interface. Evidence suggests that, in this case, the oxygen
              concentrations in the overlying water column were low during
              deposition. This inhibited the oxidation of sulphides and the
              associated lowering of pH, allowing aragonite to survive long
              enough for the shell to be neomorphosed to calcite. The loss of
              aragonite impacts upon estimates of past biodiversity and
              carbonate accumulation rates. The preservational model presented
              here implies that diagenetic loss of aragonite will be greatest
              in those areas where dysoxic-anoxic sediment lies beneath an oxic
              waterbody but least where the sediment and overlying water are
              oxygen depleted. Unfortunately, this implies that preservational
              bias through aragonite loss will be greatest in those biotopes
              which are typically most diverse and least where biodiversity is
              lowest due to oxygen restriction.",
  journal  = "Lethaia",
  month    =  mar,
  year     =  2015,
  keywords = "Ammonite; aragonite dissolution; carbonate; dysoxia; Lias;
              taphonomy",
  issn     = "0024-1164, 1502-3931",
  doi      = "10.1111/let.12126"
}



@ARTICLE{Martin-Short2015-hq,
  title    = "{Tidal resource extraction in the Pentland Firth, UK: Potential
              impacts on flow regime and sediment transport in the Inner Sound
              of Stroma}",
  author   = "Martin-Short, R and Hill, J and Kramer, S C and Avdis, A and
              Allison, P A and Piggott, M D",
  abstract = "Abstract Large-scale extraction of power from tidal streams
              within the Pentland Firth is expected to be underway in the near
              future. The Inner Sound of Stroma in particular has attracted
              significant commercial interest. To understand potential
              environmental impacts of the installation of a tidal turbine
              array a case study based upon the Inner Sound is considered. A
              numerical computational fluid dynamics model, Fluidity, is used
              to conduct a series of depth-averaged simulations to investigate
              velocity and bed shear stress changes due to the presence of
              idealised tidal turbine arrays. The number of turbines is
              increased from zero to 400. It is found that arrays in excess of
              85 turbines have the potential to affect bed shear stress
              distributions in such a way that the most favourable sites for
              sediment accumulation migrate from the edges of the Inner Sound
              towards its centre. Deposits of fine gravel and coarse sand are
              indicated to occur within arrays of greater than 240 turbines
              with removal of existing deposits in the shallower channel
              margins also possible. The effects of the turbine array may be
              seen several kilometres from the site which has implications not
              only on sediment accumulation, but also on the benthic fauna.",
  journal  = "Renewable Energy",
  volume   =  76,
  number   =  0,
  pages    = "596--607",
  month    =  apr,
  year     =  2015,
  keywords = "Tidal energy; Modelling; Pentland Firth; Finite element",
  issn     = "0960-1481",
  doi      = "10.1016/j.renene.2014.11.079"
}



@ARTICLE{Candy2014-vi,
  title     = "{Integration of Geographic Information System frameworks into
               domain discretisation and meshing processes for geophysical
               models}",
  author    = "Candy, A S and Avdis, A and Hill, J and Gorman, G J and Piggott,
               M D",
  abstract  = "Abstract. Computational simulations of physical phenomena rely
               on an accurate discretisation of the model domain. Numerical
               models have increased in sophistication to a level where it is
               possible to support terrain-following boundaries that conform
               accurately to real physical interfaces, and resolve a multiscale
               of spatial resolutions. Whilst simulation codes are maturing in
               this area, pre-processing tools have not developed significantly
               enough to competently initialise these problems in a rigorous,
               efficient and recomputable ...",
  journal   = "Geoscientific Model Development Discussions",
  publisher = "Copernicus GmbH",
  volume    =  7,
  number    =  5,
  pages     = "5993--6060",
  year      =  2014
}



@INPROCEEDINGS{Piotrowski2011-mo,
  title     = "{Optimisation and parallelisation of the partitioning around
               medoids function in R}",
  booktitle = "{High Performance Computing and Simulation (HPCS), 2011
               International Conference on}",
  author    = "Piotrowski, M and Sloan, T M and Mewsissen, M and Forster, T and
               Mitchell, L and Petrou, S and Dobrezelecki, B and Ghazal, P and
               Trew, A and Hill, J",
  abstract  = "R is a free statistical programming language commonly used for
               the analysis of high-throughput microarray and other data. It is
               currently unable to easily utilise multi processor architectures
               without substantial changes to existing R scripts. Further,
               working with large volumes of data often leads to slow
               processing and even memory allocation faults. A recent survey
               highlighted clustering algorithms as both computation and data
               intensive bottlenecks in post-genomic data analyses. These
               algorithms aim to sort numeric vectors (such as gene expression
               profiles) into groups by minimising vector distances within
               groups and maximising them between groups. This paper describes
               the optimisation and parallelisation of a popular clustering
               algorithm, partitioning around medoids (PAM), for the Simple
               Parallel R INTerface (SPRINT). SPRINT allows R users to exploit
               high performance computing systems without expert knowledge of
               such systems. This paper reports on a serial optimisation of the
               original code and a subsequent parallel implementation. The
               parallel implementation enables the processing of data sets that
               exceed the available physical memory and can yield, depending on
               the data set, over 100-fold increase in performance.",
  pages     = "707--713",
  month     =  jul,
  year      =  2011,
  keywords  = "biology computing;genomics;microprocessor chips;multiprocessing
               systems;optimisation;parallel architectures;parallel
               processing;pattern clustering;statistical analysis;R
               scripts;clustering algorithms;data intensive bottlenecks;high
               throughput microarray;medoids function;memory allocation
               faults;multiprocessor architectures;optimisation;partitioning
               around medoids;partitioning parallelisation;post genomic data
               analyses;simple parallel R interface;statistical programming
               language;Algorithm design and analysis;Benchmark
               testing;Clustering algorithms;High performance computing;Memory
               management;Optimization;Partitioning algorithms;Clustering;High
               Performance Computing;Message Passing Interface;Microarray;R",
  doi       = "10.1109/HPCSim.2011.5999896"
}



@ARTICLE{Petrou2011-sv,
  title       = "{Optimization of a parallel permutation testing function for
                 the SPRINT R package}",
  author      = "Petrou, Savvas and Sloan, Terence M and Mewissen, Muriel and
                 Forster, Thorsten and Piotrowski, Michal and Dobrzelecki,
                 Bartosz and Ghazal, Peter and Trew, Arthur and Hill, Jon",
  affiliation = "Edinburgh Parallel Computing Centre, University of Edinburgh
                 Edinburgh, EH9 3JZ, UK.",
  abstract    = "The statistical language R and its Bioconductor package are
                 favoured by many biostatisticians for processing microarray
                 data. The amount of data produced by some analyses has reached
                 the limits of many common bioinformatics computing
                 infrastructures. High Performance Computing systems offer a
                 solution to this issue. The Simple Parallel R Interface
                 (SPRINT) is a package that provides biostatisticians with easy
                 access to High Performance Computing systems and allows the
                 addition of parallelized functions to R. Previous work has
                 established that the SPRINT implementation of an R permutation
                 testing function has close to optimal scaling on up to 512
                 processors on a supercomputer. Access to supercomputers,
                 however, is not always possible, and so the work presented
                 here compares the performance of the SPRINT implementation on
                 a supercomputer with benchmarks on a range of platforms
                 including cloud resources and a common desktop machine with
                 multiprocessing capabilities. Copyright \copyright{} 2011 John
                 Wiley \& Sons, Ltd.",
  journal     = "Concurrency and computation: practice \& experience",
  volume      =  23,
  number      =  17,
  pages       = "2258--2268",
  month       =  dec,
  year        =  2011,
  issn        = "1532-0626",
  pmid        = "23335858",
  doi         = "10.1002/cpe.1787",
  pmc         = "PMC3546371"
}



@ARTICLE{Piotrowski2012-lc,
  title   = "{Exploiting Parallel R in the Cloud with SPRINT}",
  author  = "Piotrowski, M and McGilvary, G A and Sloan, T M and Mewissen, M
             and Lloyd, A D and Forster, T and Mitchell, L and Ghazal, P and
             Hill, J",
  journal = "Methods of information in medicine",
  volume  =  52,
  number  =  1,
  pages   = "80--90",
  month   =  dec,
  year    =  2012,
  issn    = "0026-1270",
  doi     = "10.3414/ME11-02-0039"
}



@ARTICLE{Hill2014-sx,
  title   = "{Adapting to life: ocean biogeochemical modelling and adaptive
             remeshing}",
  author  = "Hill, J and Popova, E E and Ham, D A and Piggott, M D and Srokosz,
             M",
  journal = "Ocean Science",
  volume  =  10,
  number  =  3,
  pages   = "323--343",
  month   =  may,
  year    =  2014,
  issn    = "1812-0784, 1812-0792",
  doi     = "10.5194/os-10-323-2014"
}



@ARTICLE{Parkinson2014-zx,
  title   = "{Direct numerical simulations of particle-laden density currents
             with adaptive, discontinuous finite elements}",
  author  = "Parkinson, S D and Hill, J and Piggott, M D and Allison, P A",
  journal = "Geoscientific Model Development",
  volume  =  7,
  number  =  5,
  pages   = "1945--1960",
  year    =  2014,
  doi     = "10.5194/gmd-7-1945-2014"
}

% The entry below contains non-ASCII chars that could not be converted
% to a LaTeX equivalent.


@ARTICLE{Hill2014-jo,
  title    = "{How does multiscale modelling and inclusion of realistic
              palaeobathymetry affect numerical simulation of the Storegga
              Slide tsunami?}",
  author   = "Hill, Jon and Collins, Gareth S and Avdis, Alexandros and Kramer,
              Stephan C and Piggott, Matthew D",
  abstract = "Abstract The ∼8.15 ka Storegga submarine slide was a large (∼3000
              km3), tsunamigenic slide off the coast of Norway. The resulting
              tsunami had run-up heights of around 10--20 m on the Norwegian
              coast, over 12 m in Shetland, 3--6 m on the Scottish mainland
              coast and reached as far as Greenland. Accurate numerical
              simulations of Storegga require high spatial resolution near the
              coasts, particularly near tsunami run-up observations, and also
              in the slide region. However, as the computational domain must
              span the whole of the Norwegian-Greenland sea, employing
              uniformly high spatial resolution is computationally prohibitive.
              To overcome this problem, we present a multiscale numerical model
              of the Storegga slide-generated tsunami where spatial resolution
              varies from 500 m to 50 km across the entire Norwegian-Greenland
              sea domain to optimally resolve the slide region, important
              coastlines and bathymetric changes. We compare results from our
              multiscale model to previous results using constant-resolution
              models and show that accounting for changes in bathymetry since
              8.15 ka, neglected in previous numerical studies of the Storegga
              slide-tsunami, improves the agreement between the model and
              inferred run-up heights in specific locations, especially in the
              Shetlands, where maximum run-up height increased from 8 m (modern
              bathymetry) to 13 m (palaeobathymetry). By tracking the Storegga
              tsunami as far south as the southern North sea, we also found
              that wave heights were high enough to inundate Doggerland, an
              island in the southern North Sea prior to sea level rise over the
              last 8 ka.",
  journal  = "Ocean Modelling",
  volume   =  83,
  number   =  0,
  pages    = "11--25",
  month    =  nov,
  year     =  2014,
  keywords = "Submarine slide; Storegga; Tsunami; Numerical modelling;
              Multiscale",
  issn     = "1463-5003",
  doi      = "10.1016/j.ocemod.2014.08.007"
}



@ARTICLE{Hill2014-bg,
  title     = "{The Supertree Toolkit 2: a new and improved software package
               with a Graphical User Interface for supertree construction}",
  author    = "Hill, Jon and Davis, Katie",
  abstract  = "Building large supertrees involves the collection, storage, and
               processing of thousands of individual phylogenies to create
               large phylogenies with thousands to tens of thousands of taxa.
               Such large phylogenies are useful for macroevolutionary studies,
               comparative biology and in conservation and biodiversity. No
               easy to use and fully integrated software package currently
               exists to carry out this task. Here, we present a new
               Python-based software package that uses well defined XML schema
               to manage both data and metadata. It builds on previous versions
               by 1) including new processing steps, such as Safe Taxonomic
               Reduction, 2) using a user-friendly GUI that guides the user to
               complete at least the minimum information required and includes
               context-sensitive documentation, and 3) a revised storage format
               that integrates both tree- and meta-data into a single file.
               These data can then be manipulated according to a well-defined,
               but flexible, processing pipeline using either the GUI or a
               command-line based tool. Processing steps include standardising
               names, deleting or replacing taxa, ensuring adequate taxonomic
               overlap, ensuring data independence, and safe taxonomic
               reduction. This software has been successfully used to store and
               process data consisting of over 1000 trees ready for analyses
               using standard supertree methods. This software makes large
               supertree creation a much easier task and provides far greater
               flexibility for further work.",
  journal   = "Biodiversity Data Journal",
  publisher = "Pensoft Publishers",
  volume    =  2,
  pages     = "e1053",
  month     =  mar,
  year      =  2014,
  issn      = "1314-2828, 1314-2828",
  doi       = "10.3897/BDJ.2.e1053"
}



@ARTICLE{Hill2008-hg,
  title       = "{SPRINT: a new parallel framework for R}",
  author      = "Hill, Jon and Hambley, Matthew and Forster, Thorsten and
                 Mewissen, Muriel and Sloan, Terence M and Scharinger, Florian
                 and Trew, Arthur and Ghazal, Peter",
  affiliation = "EPCC, The University of Edinburgh, James Clerk Maxwell
                 Building, Mayfield Road, Edinburgh EH93JZ, UK.
                 j.hill@epcc.ed.ac.uk",
  abstract    = "BACKGROUND: Microarray analysis allows the simultaneous
                 measurement of thousands to millions of genes or sequences
                 across tens to thousands of different samples. The analysis of
                 the resulting data tests the limits of existing bioinformatics
                 computing infrastructure. A solution to this issue is to use
                 High Performance Computing (HPC) systems, which contain many
                 processors and more memory than desktop computer systems. Many
                 biostatisticians use R to process the data gleaned from
                 microarray analysis and there is even a dedicated group of
                 packages, Bioconductor, for this purpose. However, to exploit
                 HPC systems, R must be able to utilise the multiple processors
                 available on these systems. There are existing modules that
                 enable R to use multiple processors, but these are either
                 difficult to use for the HPC novice or cannot be used to solve
                 certain classes of problems. A method of exploiting HPC
                 systems, using R, but without recourse to mastering parallel
                 programming paradigms is therefore necessary to analyse
                 genomic data to its fullest. RESULTS: We have designed and
                 built a prototype framework that allows the addition of
                 parallelised functions to R to enable the easy exploitation of
                 HPC systems. The Simple Parallel R INTerface (SPRINT) is a
                 wrapper around such parallelised functions. Their use requires
                 very little modification to existing sequential R scripts and
                 no expertise in parallel computing. As an example we created a
                 function that carries out the computation of a pairwise
                 calculated correlation matrix. This performs well with SPRINT.
                 When executed using SPRINT on an HPC resource of eight
                 processors this computation reduces by more than three times
                 the time R takes to complete it on one processor. CONCLUSION:
                 SPRINT allows the biostatistician to concentrate on the
                 research problems rather than the computation, while still
                 allowing exploitation of HPC systems. It is easy to use and
                 with further development will become more useful as more
                 functions are added to the framework.",
  journal     = "BMC bioinformatics",
  volume      =  9,
  pages       = "558",
  month       =  dec,
  year        =  2008,
  issn        = "1471-2105",
  pmid        = "19114001",
  doi         = "10.1186/1471-2105-9-558",
  pmc         = "PMC2628907"
}



@ARTICLE{Davis2010-hn,
  title       = "{The supertree tool kit}",
  author      = "Davis, Katie E and Hill, Jon",
  affiliation = "Faculty of Biomedical \& Life Sciences, Division of Ecology \&
                 Evolutionary Biology, Graham Kerr Building, University of
                 Glasgow, Glasgow, G12 8QQ, UK. k.davis@udcf.gla.ac.uk.",
  abstract    = "BACKGROUND: Large phylogenies are crucial for many areas of
                 biological research. One method of creating such large
                 phylogenies is the supertree method, but creating supertrees
                 containing thousands of taxa, and hence providing a
                 comprehensive phylogeny, requires hundred or even thousands of
                 source input trees. Managing and processing these data in a
                 systematic and error-free manner is challenging and will
                 become even more so as supertrees contain ever increasing
                 numbers of taxa. Protocols for processing input source
                 phylogenies have been proposed to ensure data quality, but no
                 robust software implementations of these protocols as yet
                 exist. FINDINGS: The aim of the Supertree Tool Kit (STK) is to
                 aid in the collection, storage and processing of input source
                 trees for use in supertree analysis. It is therefore
                 invaluable when creating supertrees containing thousands of
                 taxa and hundreds of source trees. The STK is a Perl module
                 with executable scripts to carry out various steps in the
                 processing protocols. In order to aid processing we have added
                 meta-data, via XML, to each tree which contains information
                 such as the bibliographic source information for the tree and
                 how the data were derived, for instance the character data
                 used to carry out the original analysis. These data are
                 essential parts of previously proposed protocols. CONCLUSIONS:
                 The STK is a bioinformatics tool designed to make it easier to
                 process source phylogenies for inclusion in supertree analysis
                 from hundreds or thousands of input source trees, whilst
                 reducing potential errors and enabling easy sharing of such
                 datasets. It has been successfully used to create the largest
                 known supertree to date containing over 5000 taxa from over
                 700 source phylogenies.",
  journal     = "BMC research notes",
  volume      =  3,
  pages       = "95",
  month       =  apr,
  year        =  2010,
  issn        = "1756-0500",
  pmid        = "20377857",
  doi         = "10.1186/1756-0500-3-95",
  pmc         = "PMC2872655"
}



@ARTICLE{Hill2012-kf,
  title    = "{On the performance of a generic length scale turbulence model
              within an adaptive finite element ocean model}",
  author   = "Hill, J. and Piggott, M.D. and Ham, D.A. and Popova, E.E. and
              Srokosz, M.A.",
  abstract = "Research into the use of unstructured mesh methods for ocean
              modelling has been growing steadily in the last few years. One
              advanta ge of using unstructured meshes is that one can
              concentrate resolution where it is needed. In addition, dynamic
              adaptive mesh optimisation (DAM O) strategies allow resolution to
              be concentrated when this is required. Despite the advantage that
              DAMO gives in terms of improving the spatia l resolution where
              and when required, small-scale turbulence in the oceans still
              requires parameterisation. A two-equation, generic length scal e
              (GLS) turbulence model (one equation for turbulent kinetic energy
              and another for a generic turbulence length-scale quantity) adds
              this param eterisation and can be used in conjunction with
              adaptive mesh techniques. In this paper, an implementation of the
              GLS turbulence parameterisati on is detailed in a
              non-hydrostatic, finite-element, unstructured mesh ocean model,
              Fluidity-ICOM. The implementation is validated by comparing to
              both a laboratory-scale experiment and real-world observations,
              on both fixed and adaptive meshes. The model performs well,
              matching labora tory and observed data, with resolution being
              adjusted as necessary by DAMO. Flexibility in the prognostic
              fields used to construct the error m etric used in DAMO is
              required to ensure best performance. Moreover, the adaptive mesh
              models perform as well as fixed mesh models in terms of root mean
              square error to observation or theoretical mixed layer depths,
              but uses fewer elements and hence has a reduced computational
              cost.",
  journal  = "Ocean Modelling",
  volume   =  56,
  pages    = "1--15",
  month    =  jul,
  year     =  2012,
  keywords = "adaptive mesh,finite element,turbulence
              parameterisation,unstructured mesh",
  issn     = "14635003",
  doi      = "10.1016/j.ocemod.2012.07.003"
}



@ARTICLE{Hill2012-gg,
  title    = "{Preservation of forcing signals in shallow water carbonate
              sediments}",
  author   = "Hill, Jon and Wood, Rachel and Curtis, Andrew and Tetzlaff,
              Daniel M.",
  abstract = "No consensus has been reached on whether the metre-scale cycles
              that commonly occur in peritidal carbonates are predominately a
              product of external relative sea-level variations (allocycles) or
              an intrinsic property of carbonate production generated via the
              interaction of non-linear processes (autocycles). For any forcing
              signal such as eustatic sea-level change, to be detectable in
              stratigraphy its effects must be preserved. Here, a
              deterministic, three-dimensional geological process model is used
              to explore how such cycles are preserved in the geological record
              in the presence of autocyclic processes. Each simulation produced
              cycle thickness distributions that are statistically
              indistinguishable from a theoretical Poisson process, regardless
              of whether auto- or allo-cycles dominated. Spectral analysis of
              depositional time series constructed from idealised geological
              sections showed that all detectable signals occurred within the
              Milankovitch forcing frequency bands, even when no Milankovitch
              forcing was present. Thus, it is deduced that from any geological
              section alone, external forcing signals are detectable but are
              not distinguishable from autocyclically produced signals.
              Interestingly, there is no correlation between the percentage of
              sediment preserved and the accuracy with which signals are
              detectable in the preserved sediment: in some model realisations,
              even with preservation as low as 40\%, the correct forcing signal
              can be detected accurately while, conversely, sections with
              preservation as high as 90\% can have poor signal preservation.
              The reverse can also be true in other models. It is therefore
              concluded that distinguishing allocyclic and autocyclic forcing
              in shallow marine or peritidal carbonate successions is likely to
              be extremely difficult except in cases of extraordinary
              sedimentary preservation and dating accuracy.",
  journal  = "Sedimentary geology",
  volume   = "275-276",
  number   =  1,
  pages    = "79--92",
  month    =  jul,
  year     =  2012,
  keywords = "carbonate sedimentation,cyclicity,forward
              modelling,preservation,spectral analysis",
  issn     = "0037-0738",
  doi      = "10.1016/j.sedgeo.2012.07.017"
}



@ARTICLE{Hill2009-he,
  title    = "{Modeling shallow marine carbonate depositional systems}",
  author   = "Hill, Jon and Tetzlaff, Daniel and Curtis, Andrew and Wood,
              Rachel",
  abstract = "Geological Process Models (GPMs) have been used in the past to
              simulate the distinctive stratigraphies formed in carbonate
              sediments, and to explore the interaction of controls that
              produce heterogeneity. Previous GPMs have only indirectly
              included the supersaturation of calcium carbonate in seawater, a
              key physicochemical control on carbonate production in reef and
              lagoon environments, by modifying production rates based on the
              distance from open marine sources. We here use the residence time
              of water in the lagoon and reef areas as a proxy for the
              supersaturation state of carbonate in a new process model,
              Carbonate GPM. Residence times in the model are calculated using
              a particle-tracking algorithm. Carbonate production is also
              controlled by water depth and wave power dissipation. Once
              deposited, sediment can be eroded, transported and re-deposited
              via both advective and diffusive processes. We show that using
              residence time as a control on production might explain the
              formation of non-ordered, three-dimensional carbonate
              stratigraphies by lateral shifts in the locus of carbonate
              deposition on timescales comparable to so-called 5th-order
              sea-level oscillations. We also show that representing
              supersaturation as a function of distance from open marine
              sources, as in previous models, cannot correctly predict the
              supersaturation distribution over a lagoon due to the intricacies
              of the flow regime.",
  journal  = "Computers \& geosciences",
  volume   =  35,
  number   =  9,
  pages    = "1862--1874",
  month    =  sep,
  year     =  2009,
  keywords = "Carbonate",
  issn     = "0098-3004",
  doi      = "10.1016/j.cageo.2008.12.006"
}



@INPROCEEDINGS{Hill2005-fe,
  title     = "{Complexity in Carbonate Systems}",
  booktitle = "{GIS and Spatial Analysis, Vol 1 and 2}",
  author    = "Hill, Jon and Curtis, Andrew and Wood, R A and Tetzlaff, Daniel
               M",
  editor    = "Cheng, Q and BonhamCarter, G",
  abstract  = "Carbonate sediments are often highly heterogeneous due to the
               numerous factors that control deposition. Several of these
               processes are non-linear, so that depositional stratigraphies
               may consequently form complicated, perhaps even chaotic,
               geometries. Forward modelling can help us to understand the
               interactions between the various processes involved. Here we
               present a new 3D forward model of carbonate production and
               deposition, which is specifically designed to test the
               interactions between the three main depositional controls: light
               intensity, wave power and carbonate supersaturation, the latter
               of which is unique to this model. The results of this analysis
               suggest that it may be impossible to predict in detail the
               stratigraphy of carbonate deposits due to its super-sensitivity
               to initial conditions or controlling parameters. This reinforces
               the conclusions reached using previous process models. However,
               unlike previous models, our model does not explicitly include
               nonlinear biological interactions as a control. Instead it shows
               that similar supersensitive behaviour may originate from
               physicochemical processes alone.",
  pages     = "1141--1146",
  year      =  2005
}

\">\n            <i class=\"fa fa-download fa-fw\"></i> Download BibTeX\n          </a>\n        </li>\n        <li>\n          <a href=\"//bibbase.org/rss?bib=https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib\">\n            <i class=\"fa fa-rss fa-fw\"></i> RSS Feed\n          </a>\n          </li>\n      </ul>\n      </li>\n\n      \n\n\n      \n    </ul>\n\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_embed\"\n         style=\"display: none;\">\n\n      Excellent! Next you can\n      <a href=\"/network/register?next=/network/newSiteFromTemplate%3Fbiburl=https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib\"\n      >create a new website with this list</a>, or\n      embed it in an existing web page by copying &amp; pasting\n      any of the following snippets.\n\n      <div style=\"text-align: left; margin-top: 1em;\">\n        <strong>JavaScript</strong>\n        <span class=\"comment recommended\">(easiest)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;script src=\"https://bibbase.org/show?bib=https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib&amp;jsonp=1&amp;jsonp=1\"&gt;&lt;/script&gt;\n          </code>\n        </div>\n\n        <strong>PHP</strong>\n        <div class=\"well well-small\">\n          <code>\n            &lt;?php\n            $contents = file_get_contents(\"https://bibbase.org/show?bib=https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib&amp;jsonp=1\");\n            print_r($contents);\n            ?&gt;\n          </code>\n        </div>\n\n        <strong>iFrame</strong>\n        <span class=\"comment\">(not recommended)</span>\n        <div class=\"well well-small\">\n          <code>\n            &lt;iframe src=\"https://bibbase.org/show?bib=https://raw.githubusercontent.com/EnvModellingGroup/EnvModellingGroup.github.io/master/publications.bib&amp;jsonp=1\"&gt;&lt;/iframe&gt;\n          </code>\n        </div>\n\n        <p>\n          For more details see the <a href=\"//bibbase.org/help\">documention</a>.\n        </p>\n      </div>\n    </div>\n\n    <div class=\"alert alert-success bibbase_msg\" id=\"bibbase_msg_preview\"\n         style=\"display: none;\">\n\n      This is a preview! To use this list on your own web site\n      or create a new web site from it,\n      <a href=\"/network/register?next=/network/newAccountWithFile%3FfileId=\"\n      >create a free account</a>. The file will be added\n      and you will be able to edit it in the File Manager.\n      We will show you instructions once you've created your account.\n    </div>\n\n    <div class=\"alert alert-warning bibbase_msg\" id=\"bibbase_msg_mendeley1\"\n         style=\"display: none;\">\n\n      <p>To the site owner:</p>\n\n      <p><strong>Action required!</strong> Mendeley is changing its\n        API. In order to keep using Mendeley with BibBase past April\n        14th, you need to:\n        <ol>\n          <li>renew the authorization for BibBase on Mendeley, and</li>\n          <li>update the BibBase URL\n            in your page the same way you did when you initially set up\n            this page.\n          </li>\n        </ol>\n      </p>\n\n      <p>\n        <a href=\"http://bibbase.org/cgi-bin/mendeley2/get.py\">\n          <i class=\"fa fa-angle-double-right\"></i>\n          Fix it now</a>\n      </p>\n    </div>\n\n  </div>\n\n\n  <div id=\"bibbase_body\">\n    \n  \n  <div class=\"bibbase_group_whole\" id=\"group_2023\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2023')\"\n      onkeypress=\"toggleGroup('group_2023')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2023</span>\n      <span class=\"bibbase_group_count\">\n        \n        (2)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"woodroffe-hill-bustamantefernandez-lloyd-luff-richards-shennan-onthevariedimpactofthestoreggatsunamiinnorthwestscotland-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  On the varied impact of the Storegga tsunami in northwest Scotland.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Woodroffe, S. A; Hill, J.; Bustamante-Fernandez, E.; Lloyd, J. M; Luff, J.; Richards, S.;  and Shennan, I.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Quaternary Science</i>. May 2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1002/jqs.3539\"\n     onclick=\"log_download('woodroffe-hill-bustamantefernandez-lloyd-luff-richards-shennan-onthevariedimpactofthestoreggatsunamiinnorthwestscotland-2023', 'http://doi.org/10.1002/jqs.3539', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/woodroffe-hill-bustamantefernandez-lloyd-luff-richards-shennan-onthevariedimpactofthestoreggatsunamiinnorthwestscotland-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('woodroffe-hill-bustamantefernandez-lloyd-luff-richards-shennan-onthevariedimpactofthestoreggatsunamiinnorthwestscotland-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Woodroffe2023-cp,\n  title     = &quot;{On the varied impact of the Storegga tsunami in northwest\n               Scotland}&quot;,\n  author    = &quot;Woodroffe, Sarah A and Hill, Jon and Bustamante-Fernandez,\n               Emmanuel and Lloyd, Jerry M and Luff, Jake and Richards, Sarah\n               and Shennan, Ian&quot;,\n  journal   = &quot;Journal of Quaternary Science&quot;,\n  publisher = &quot;Wiley&quot;,\n  month     =  may,\n  year      =  2023,\n  copyright = &quot;http://creativecommons.org/licenses/by/4.0/&quot;,\n  language  = &quot;en&quot;,\n  issn      = &quot;0267-8179, 1099-1417&quot;,\n  doi       = &quot;10.1002/jqs.3539&quot;\n}\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-rush-peakall-johnson-hodson-barlow-bowman-gehrels-etal-resolvingtsunamiwavedynamicsintegratingsedimentologyandnumericalmodelling-2023\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Resolving tsunami wave dynamics: integrating sedimentology and numerical modelling.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Rush, G.; Peakall, J.; Johnson, M.; Hodson, L.; Barlow, N. L M; Bowman, E. T; Gehrels, W R.; Hodgson, D. M;  and Kesserwani, G.\n</span>\n\n  \n\n</span>\n\n  <i>The depositional record</i>. August 2023.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1002/dep2.247\"\n     onclick=\"log_download('hill-rush-peakall-johnson-hodson-barlow-bowman-gehrels-etal-resolvingtsunamiwavedynamicsintegratingsedimentologyandnumericalmodelling-2023', 'http://doi.org/10.1002/dep2.247', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-rush-peakall-johnson-hodson-barlow-bowman-gehrels-etal-resolvingtsunamiwavedynamicsintegratingsedimentologyandnumericalmodelling-2023\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-rush-peakall-johnson-hodson-barlow-bowman-gehrels-etal-resolvingtsunamiwavedynamicsintegratingsedimentologyandnumericalmodelling-2023')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2023-se,\n  title     = &quot;{Resolving tsunami wave dynamics: integrating sedimentology and\n               numerical modelling}&quot;,\n  author    = &quot;Hill, Jon and Rush, Graham and Peakall, Jeff and Johnson,\n               Michael and Hodson, Luke and Barlow, Natasha L M and Bowman,\n               Elisabeth T and Gehrels, W Roland and Hodgson, David M and\n               Kesserwani, Georges&quot;,\n  journal   = &quot;The depositional record&quot;,\n  publisher = &quot;Wiley&quot;,\n  month     =  aug,\n  year      =  2023,\n  copyright = &quot;http://creativecommons.org/licenses/by/4.0/&quot;,\n  language  = &quot;en&quot;,\n  issn      = &quot;2055-4877&quot;,\n  doi       = &quot;10.1002/dep2.247&quot;\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2022\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2022')\"\n      onkeypress=\"toggleGroup('group_2022')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2022</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"lee-webster-salles-mawson-hill-tidaldynamicsdriveooidformationinthecapricornchannelsincethelastglacialmaximum-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Tidal dynamics drive ooid formation in the Capricorn Channel since the Last Glacial Maximum.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Lee, K. C; Webster, J. M; Salles, T.; Mawson, E. E;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Marine geology</i>,106944. November 2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.margeo.2022.106944\"\n     onclick=\"log_download('lee-webster-salles-mawson-hill-tidaldynamicsdriveooidformationinthecapricornchannelsincethelastglacialmaximum-2022', 'http://doi.org/10.1016/j.margeo.2022.106944', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/lee-webster-salles-mawson-hill-tidaldynamicsdriveooidformationinthecapricornchannelsincethelastglacialmaximum-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('lee-webster-salles-mawson-hill-tidaldynamicsdriveooidformationinthecapricornchannelsincethelastglacialmaximum-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Lee2022-sx,\n  title    = &quot;{Tidal dynamics drive ooid formation in the Capricorn Channel\n              since the Last Glacial Maximum}&quot;,\n  author   = &quot;Lee, Katherine C and Webster, Jody M and Salles, Tristan and\n              Mawson, Eleanor E and Hill, Jon&quot;,\n  journal  = &quot;Marine geology&quot;,\n  pages    = &quot;106944&quot;,\n  month    =  nov,\n  year     =  2022,\n  keywords = &quot;Numerical model; Palaeotides; Sediment; Great Barrier Reef; Ooids&quot;,\n  issn     = &quot;0025-3227&quot;,\n  doi      = &quot;10.1016/j.margeo.2022.106944&quot;\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  <a href=\"https://www.sciencedirect.com/science/article/pii/S027737912200350X\"\n     onclick=\"return trackOutboundLink('publications', 'click', 'hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022', 'https://www.sciencedirect.com/science/article/pii/S027737912200350X', event);\">\n    Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea.\n  </a>\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Avdis, A.; Bailey, G.;  and Lambeck, K.\n</span>\n\n  \n\n</span>\n\n  <i>Quaternary Science Reviews</i>, 293: 107719.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n  <a href=\"https://www.sciencedirect.com/science/article/pii/S027737912200350X\"\n     onclick=\"log_download('hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022', 'https://www.sciencedirect.com/science/article/pii/S027737912200350X', event.ctrlKey, event)\">\n    <img src=\"//bibbase.org/img/filetypes/link.svg\"\n\t     alt=\"Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea [link]\"\n       title=\"Paper\"\n\t     class=\"bibbase_icon\"\n         ><span class=\"bibbase_icon_text\">Paper</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"http://doi.org/https://doi.org/10.1016/j.quascirev.2022.107719\"\n     onclick=\"log_download('hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022', 'http://doi.org/https://doi.org/10.1016/j.quascirev.2022.107719', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-avdis-bailey-lambeck-sealevelchangepalaeotidalmodellingandhominindispersalsthecaseofthesouthernredsea-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{HILL2022107719,\ntitle = {Sea-level change, palaeotidal modelling and hominin dispersals: The case of the southern Red Sea},\njournal = {Quaternary Science Reviews},\nvolume = {293},\npages = {107719},\nyear = {2022},\nissn = {0277-3791},\ndoi = {https://doi.org/10.1016/j.quascirev.2022.107719},\nurl = {https://www.sciencedirect.com/science/article/pii/S027737912200350X},\nauthor = {Jon Hill and Alexandros Avdis and Geoff Bailey and Kurt Lambeck},\nkeywords = {Sea-level change, Shoreline reconstruction, Tidal modelling, Simulation, Hominin dispersal},\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"mawson-lee-hill-sealevelriseandthegreatbarrierreefthefutureimplicationsonreeftidaldynamics-2022\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Sea level rise and the Great Barrier Reef the future implications on reef tidal dynamics.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Mawson, E. E; Lee, K. C;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Geophysical Research, C: Oceans</i>.  2022.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1029/2021jc017823\"\n     onclick=\"log_download('mawson-lee-hill-sealevelriseandthegreatbarrierreefthefutureimplicationsonreeftidaldynamics-2022', 'http://doi.org/10.1029/2021jc017823', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/mawson-lee-hill-sealevelriseandthegreatbarrierreefthefutureimplicationsonreeftidaldynamics-2022\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>1 download</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('mawson-lee-hill-sealevelriseandthegreatbarrierreefthefutureimplicationsonreeftidaldynamics-2022')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Mawson2022-ni,\n  title     = &quot;{Sea level rise and the Great Barrier Reef the future\n               implications on reef tidal dynamics}&quot;,\n  author    = &quot;Mawson, Eleanor E and Lee, Katherine C and Hill, Jon&quot;,\n  journal   = &quot;Journal of Geophysical Research, C: Oceans&quot;,\n  publisher = &quot;American Geophysical Union (AGU)&quot;,\n  year      =  2022,\n  language  = &quot;en&quot;,\n  issn      = &quot;2169-9275, 2169-9291&quot;,\n  doi       = &quot;10.1029/2021jc017823&quot;\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2021\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2021')\"\n      onkeypress=\"toggleGroup('group_2021')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2021</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  <a href=\"https://www.sciencedirect.com/science/article/pii/S0012825221003287\"\n     onclick=\"return trackOutboundLink('publications', 'click', 'collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021', 'https://www.sciencedirect.com/science/article/pii/S0012825221003287', event);\">\n    Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling.\n  </a>\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Collins, D. S.; Avdis, A.; Wells, M. R.; Dean, C. D.; Mitchell, A. J.; Allison, P. A.; Johnson, H. D.; Hampson, G. J.; Hill, J.;  and Piggott, M. D.\n</span>\n\n  \n\n</span>\n\n  <i>Earth-Science Reviews</i>, 223: 103827.  2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n  <a href=\"https://www.sciencedirect.com/science/article/pii/S0012825221003287\"\n     onclick=\"log_download('collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021', 'https://www.sciencedirect.com/science/article/pii/S0012825221003287', event.ctrlKey, event)\">\n    <img src=\"//bibbase.org/img/filetypes/link.svg\"\n\t     alt=\"Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling [link]\"\n       title=\"Paper\"\n\t     class=\"bibbase_icon\"\n         ><span class=\"bibbase_icon_text\">Paper</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"http://doi.org/https://doi.org/10.1016/j.earscirev.2021.103827\"\n     onclick=\"log_download('collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021', 'http://doi.org/https://doi.org/10.1016/j.earscirev.2021.103827', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>1 download</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('collins-avdis-wells-dean-mitchell-allison-johnson-hampson-etal-predictionofshorelineshelfdepositionalprocessregimeguidedbypalaeotidalmodelling-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{COLLINS2021103827,\ntitle = {Prediction of shoreline–shelf depositional process regime guided by palaeotidal modelling},\njournal = {Earth-Science Reviews},\nvolume = {223},\npages = {103827},\nyear = {2021},\nissn = {0012-8252},\ndoi = {https://doi.org/10.1016/j.earscirev.2021.103827},\nurl = {https://www.sciencedirect.com/science/article/pii/S0012825221003287},\nauthor = {Daniel S. Collins and Alexandros Avdis and Martin R. Wells and Christopher D. Dean and Andrew J. Mitchell and Peter A. Allison and Howard D. Johnson and Gary J. Hampson and Jon Hill and Matthew D. Piggott},\nkeywords = {Shoreline, Shelf, Delta, Wave, Tide, Fluvial, Process regime, Numerical modelling, Palaeotidal},\n\n}\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"bateman-kinnaird-hill-ashurst-mohan-bateman-robinson-detailingtheimpactofthestoreggatsunamiatmontrosescotland-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Detailing the impact of the Storegga Tsunami at Montrose, Scotland.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Bateman, M. D; Kinnaird, T. C; Hill, J.; Ashurst, R. A; Mohan, J.; Bateman, R. B I;  and Robinson, R.\n</span>\n\n  \n\n</span>\n\n  <i>Boreas</i>, (bor.12532). June 2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1111/bor.12532\"\n     onclick=\"log_download('bateman-kinnaird-hill-ashurst-mohan-bateman-robinson-detailingtheimpactofthestoreggatsunamiatmontrosescotland-2021', 'http://doi.org/10.1111/bor.12532', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/bateman-kinnaird-hill-ashurst-mohan-bateman-robinson-detailingtheimpactofthestoreggatsunamiatmontrosescotland-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>1 download</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('bateman-kinnaird-hill-ashurst-mohan-bateman-robinson-detailingtheimpactofthestoreggatsunamiatmontrosescotland-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Bateman2021-mj,\n  title     = &quot;{Detailing the impact of the Storegga Tsunami at Montrose,\n               Scotland}&quot;,\n  author    = &quot;Bateman, Mark D and Kinnaird, Tim C and Hill, Jon and Ashurst,\n               Robert A and Mohan, Jenna and Bateman, Rebecca B I and Robinson,\n               Ruth&quot;,\n  journal   = &quot;Boreas&quot;,\n  publisher = &quot;Wiley&quot;,\n  number    = &quot;bor.12532&quot;,\n  month     =  jun,\n  year      =  2021,\n  language  = &quot;en&quot;,\n  issn      = &quot;0300-9483, 1502-3885&quot;,\n  doi       = &quot;10.1111/bor.12532&quot;\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"talavera-vilaconcejo-webster-smith-duce-fellowes-salles-harris-etal-morphodynamiccontrolsforgrowthandevolutionofarubblecoralisland-2021\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Morphodynamic Controls for Growth and Evolution of a Rubble Coral Island.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Talavera, L.; Vila-Concejo, A.; Webster, J. M; Smith, C.; Duce, S.; Fellowes, T. E; Salles, T.; Harris, D.; Hill, J.; Figueira, W.;  and Hacker, J.\n</span>\n\n  \n\n</span>\n\n  <i>Remote Sensing</i>, 13(8): 1582. April 2021.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.3390/rs13081582\"\n     onclick=\"log_download('talavera-vilaconcejo-webster-smith-duce-fellowes-salles-harris-etal-morphodynamiccontrolsforgrowthandevolutionofarubblecoralisland-2021', 'http://doi.org/10.3390/rs13081582', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/talavera-vilaconcejo-webster-smith-duce-fellowes-salles-harris-etal-morphodynamiccontrolsforgrowthandevolutionofarubblecoralisland-2021\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('talavera-vilaconcejo-webster-smith-duce-fellowes-salles-harris-etal-morphodynamiccontrolsforgrowthandevolutionofarubblecoralisland-2021')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Talavera2021-lw,\n  title     = &quot;{Morphodynamic Controls for Growth and Evolution of a Rubble\n               Coral Island}&quot;,\n  author    = &quot;Talavera, Lara and Vila-Concejo, Ana and Webster, Jody M and\n               Smith, Courtney and Duce, Stephanie and Fellowes, Thomas E and\n               Salles, Tristan and Harris, Daniel and Hill, Jon and Figueira,\n               Will and Hacker, J{\\&quot;o}rg&quot;,\n  journal   = &quot;Remote Sensing&quot;,\n  publisher = &quot;Multidisciplinary Digital Publishing Institute&quot;,\n  volume    =  13,\n  number    =  8,\n  pages     = &quot;1582&quot;,\n  month     =  apr,\n  year      =  2021,\n  language  = &quot;en&quot;,\n  doi       = &quot;10.3390/rs13081582&quot;\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2020\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2020')\"\n      onkeypress=\"toggleGroup('group_2020')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2020</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"smith-hill-mouradian-piggott-collins-anewmethodologyforperforminglargescalesimulationsoftsunamigeneratedbydeformablesubmarineslides-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  A new methodology for performing large scale simulations of tsunami generated by deformable submarine slides.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Smith, R. C; Hill, J.; Mouradian, S. L; Piggott, M. D;  and Collins, G. S\n</span>\n\n  \n\n</span>\n\n  <i>Ocean Modelling</i>,101674. July 2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.ocemod.2020.101674\"\n     onclick=\"log_download('smith-hill-mouradian-piggott-collins-anewmethodologyforperforminglargescalesimulationsoftsunamigeneratedbydeformablesubmarineslides-2020', 'http://doi.org/10.1016/j.ocemod.2020.101674', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/smith-hill-mouradian-piggott-collins-anewmethodologyforperforminglargescalesimulationsoftsunamigeneratedbydeformablesubmarineslides-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>1 download</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('smith-hill-mouradian-piggott-collins-anewmethodologyforperforminglargescalesimulationsoftsunamigeneratedbydeformablesubmarineslides-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Smith2020-om,\n  title    = &quot;{A new methodology for performing large scale simulations of\n              tsunami generated by deformable submarine slides}&quot;,\n  author   = &quot;Smith, Rebecca C and Hill, Jon and Mouradian, Simon L and\n              Piggott, Matthew D and Collins, Gareth S&quot;,\n  journal  = &quot;Ocean Modelling&quot;,\n  pages    = &quot;101674&quot;,\n  month    =  jul,\n  year     =  2020,\n  keywords = &quot;Submarine slide; Tsunami; Numerical modelling; Landslides&quot;,\n  issn     = &quot;1463-5003&quot;,\n  doi      = &quot;10.1016/j.ocemod.2020.101674&quot;\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"baker-craighead-jarvis-stenton-angeloudis-mackie-avdis-piggott-etal-modellingtheimpactoftidalrangeenergyonspeciescommunities-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Modelling the impact of tidal range energy on species communities.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Baker, A. L; Craighead, R. M; Jarvis, E. J; Stenton, H. C; <a class=\"bibbase author link\" href=\"https://thangel.github.io/publications.html\">Angeloudis, A.</a>; Mackie, L.; Avdis, A.; Piggott, M. D;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Ocean & coastal management</i>, 193: 105221. August 2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.ocecoaman.2020.105221\"\n     onclick=\"log_download('baker-craighead-jarvis-stenton-angeloudis-mackie-avdis-piggott-etal-modellingtheimpactoftidalrangeenergyonspeciescommunities-2020', 'http://doi.org/10.1016/j.ocecoaman.2020.105221', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/baker-craighead-jarvis-stenton-angeloudis-mackie-avdis-piggott-etal-modellingtheimpactoftidalrangeenergyonspeciescommunities-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('baker-craighead-jarvis-stenton-angeloudis-mackie-avdis-piggott-etal-modellingtheimpactoftidalrangeenergyonspeciescommunities-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Baker2020-ci,\n  title    = &quot;{Modelling the impact of tidal range energy on species communities}&quot;,\n  author   = &quot;Baker, Amy L and Craighead, Robert M and Jarvis, Emma J and\n              Stenton, Harriett C and Angeloudis, Athanasios and Mackie, Lucas\n              and Avdis, Alexandros and Piggott, Matthew D and Hill, Jon&quot;,\n  journal  = &quot;Ocean \\&amp; coastal management&quot;,\n  volume   =  193,\n  pages    = &quot;105221&quot;,\n  month    =  aug,\n  year     =  2020,\n  keywords = &quot;Tidal energy; Environmental impacts; Modelling&quot;,\n  issn     = &quot;0964-5691&quot;,\n  doi      = &quot;10.1016/j.ocecoaman.2020.105221&quot;\n}\n\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"dawson-dawson-bondevik-costa-hill-stewart-reconcilingstoreggatsunamisedimentationpatternswithmodelledwaveheightsadiscussionfromtheshetlandislesfieldlaboratory-2020\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Reconciling Storegga tsunami sedimentation patterns with modelled wave heights: A discussion from the Shetland Isles field laboratory.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Dawson, A. G; Dawson, S.; Bondevik, S.; Costa, P. J M; Hill, J.;  and Stewart, I.\n</span>\n\n  \n\n</span>\n\n  <i>Sedimentology</i>. June 2020.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1111/sed.12643\"\n     onclick=\"log_download('dawson-dawson-bondevik-costa-hill-stewart-reconcilingstoreggatsunamisedimentationpatternswithmodelledwaveheightsadiscussionfromtheshetlandislesfieldlaboratory-2020', 'http://doi.org/10.1111/sed.12643', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/dawson-dawson-bondevik-costa-hill-stewart-reconcilingstoreggatsunamisedimentationpatternswithmodelledwaveheightsadiscussionfromtheshetlandislesfieldlaboratory-2020\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>1 download</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('dawson-dawson-bondevik-costa-hill-stewart-reconcilingstoreggatsunamisedimentationpatternswithmodelledwaveheightsadiscussionfromtheshetlandislesfieldlaboratory-2020')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Dawson2019-db,\n  title    = &quot;{Reconciling Storegga tsunami sedimentation patterns with modelled\n              wave heights: A discussion from the Shetland Isles field\n              laboratory}&quot;,\n  author   = &quot;Dawson, Alastair G and Dawson, Sue and Bondevik, Stein and Costa,\n              Pedro J M and Hill, Jon and Stewart, Iain&quot;,\n  journal  = &quot;Sedimentology&quot;,\n  month    =  jun,\n  year     =  2020,\n  issn     = &quot;0037-0746&quot;,\n  doi      = &quot;10.1111/sed.12643&quot;\n}\n\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2019\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2019')\"\n      onkeypress=\"toggleGroup('group_2019')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2019</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"dean-allison-hampson-hill-aragonitebiasexhibitssystematicspatialvariationinthelatecretaceouswesterninteriorseawaynorthamerica-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Aragonite bias exhibits systematic spatial variation in the Late Cretaceous Western Interior Seaway, North America.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Dean, C. D; Allison, P. A; Hampson, G. J;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Paleobiology</i>, 45(4): 571–597. September 2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1017/pab.2019.33\"\n     onclick=\"log_download('dean-allison-hampson-hill-aragonitebiasexhibitssystematicspatialvariationinthelatecretaceouswesterninteriorseawaynorthamerica-2019', 'http://doi.org/10.1017/pab.2019.33', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/dean-allison-hampson-hill-aragonitebiasexhibitssystematicspatialvariationinthelatecretaceouswesterninteriorseawaynorthamerica-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('dean-allison-hampson-hill-aragonitebiasexhibitssystematicspatialvariationinthelatecretaceouswesterninteriorseawaynorthamerica-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Dean2019-bp,\n  title     = &quot;{Aragonite bias exhibits systematic spatial variation in the Late\n               Cretaceous Western Interior Seaway, North America}&quot;,\n  author    = &quot;Dean, Christopher D and Allison, Peter A and Hampson, Gary J and\n               Hill, Jon&quot;,\n  journal   = &quot;Paleobiology&quot;,\n  publisher = &quot;Cambridge University Press&quot;,\n  volume    =  45,\n  number    =  4,\n  pages     = &quot;571--597&quot;,\n  month     =  sep,\n  year      =  2019,\n  issn      = &quot;0094-8373, 1938-5331&quot;,\n  doi       = &quot;10.1017/pab.2019.33&quot;\n}\n\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-hrdsapythonpackageforhierarchicalrasterdatasets-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  HRDS: A Python package for hierarchical raster datasets.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Open Source Software</i>, 4(37): 1112. May 2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.21105/joss.01112\"\n     onclick=\"log_download('hill-hrdsapythonpackageforhierarchicalrasterdatasets-2019', 'http://doi.org/10.21105/joss.01112', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-hrdsapythonpackageforhierarchicalrasterdatasets-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-hrdsapythonpackageforhierarchicalrasterdatasets-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2019-nq,\n  title    = &quot;{HRDS: A Python package for hierarchical raster datasets}&quot;,\n  author   = &quot;Hill, Jon&quot;,\n  abstract = &quot;Software archive&quot;,\n  journal  = &quot;Journal of Open Source Software&quot;,\n  volume   =  4,\n  number   =  37,\n  pages    = &quot;1112&quot;,\n  month    =  may,\n  year     =  2019,\n  issn     = &quot;2475-9066&quot;,\n  doi      = &quot;10.21105/joss.01112&quot;\n}\n\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Software archive\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"dufeu-funke-kramer-hill-piggott-thetradeoffbetweentidalturbinearrayyieldandenvironmentalimpactamaximumentropymodellingapproach-2019\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  The trade-off between tidal-turbine array yield and environmental impact: a maximum entropy modelling approach.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  du Feu, R. J.; Funke, S.; Kramer, S. C.; Hill, J.;  and Piggott, M. D.\n</span>\n\n  \n\n</span>\n\n  <i>Renewable Energy</i>.  2019.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/dufeu-funke-kramer-hill-piggott-thetradeoffbetweentidalturbinearrayyieldandenvironmentalimpactamaximumentropymodellingapproach-2019\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('dufeu-funke-kramer-hill-piggott-thetradeoffbetweentidalturbinearrayyieldandenvironmentalimpactamaximumentropymodellingapproach-2019')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{dufeu_2019,\nauthor = {du Feu, R. J. and Funke, S. and Kramer, S. C. and Hill, J. and Piggott, M. D.},\ntitle = {The trade-off between tidal-turbine array yield and environmental impact: a maximum entropy modelling approach},\njournal = {Renewable Energy},\nyear = {2019}\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2018\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2018')\"\n      onkeypress=\"toggleGroup('group_2018')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2018</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  <a href=\"https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474\"\n     onclick=\"return trackOutboundLink('publications', 'click', 'collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018', 'https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474', event);\">\n    Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia.\n  </a>\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Collins, D. S; Avdis, A.; Allison, P. A; Johnson, H. D; Hill, J.;  and Piggott, M. D\n</span>\n\n  \n\n</span>\n\n  <i>Sedimentology</i>, 0.  2018.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n  <a href=\"https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474\"\n     onclick=\"log_download('collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018', 'https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474', event.ctrlKey, event)\">\n    <img src=\"//bibbase.org/img/filetypes/link.svg\"\n\t     alt=\"Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia [link]\"\n       title=\"Paper\"\n\t     class=\"bibbase_icon\"\n         ><span class=\"bibbase_icon_text\">Paper</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"http://doi.org/10.1111/sed.12474\"\n     onclick=\"log_download('collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018', 'http://doi.org/10.1111/sed.12474', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('collins-avdis-allison-johnson-hill-piggott-controlsontidalsedimentationandpreservationinsightsfromnumericaltidalmodellinginthelateoligocenemiocenesouthchinaseasoutheastasia-2018')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@article{collins_2018,\nauthor = {Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and Johnson, Howard D and Hill, Jon and Piggott, Matthew D},\ntitle = {Controls on tidal sedimentation and preservation: Insights from numerical tidal modelling in the Late Oligocene–Miocene South China Sea, Southeast Asia},\njournal = {Sedimentology},\nvolume = {0},\nyear = {2018},\nkeywords = {Embayments, numerical modelling, Oligocene–Miocene, preservation, shoreline–shelf, South China Sea, tidal amplification, tides},\ndoi = {10.1111/sed.12474},\nurl = {https://onlinelibrary.wiley.com/doi/abs/10.1111/sed.12474},\neprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/sed.12474},\nabstract = {Abstract Numerical tidal modelling, when integrated with other geological datasets, can significantly inform the analysis of physical sedimentation processes and the depositional and preservational record of ancient tide-influenced shoreline–shelf systems. This is illustrated in the Oligo–Miocene of the South China Sea, which experienced significant changes in basin physiography and where tide-influenced, shoreline–shelf deposition is preserved in ca 10 sub-basins. Palaeogeographic reconstructions, palaeotidal modelling and regional sedimentary facies analysis have been integrated in order to evaluate the spatial–temporal evolution and physiographic controls on tidal sedimentation and preservation during the ca 25 Myr Oligo–Miocene record in the South China Sea. Palaeotidal modelling, using an astronomically-forced and global tidal model (Fluidity) at a maximum 10 km resolution, indicates that spring tides along Late Oligocene to Middle Miocene coastlines were predominantly mesotidal–macrotidal and capable of transporting sand, which reflects two main conditions: (i) increased tidal inflow through wider ocean connections to the Pacific Ocean; and (ii) tidal amplification resulting from constriction of the tidal wave in a ‘blind gulf’ type of basin morphology. Since the Middle to Late Miocene, a reduction in the amplitude and strength of tides in the South China Sea was mainly due to diminishing tidal inflow from the Pacific Ocean caused by the northward movement of the Philippines and Izu–Bonin–Mariana arc. Sensitivity tests to palaeogeographic and palaeobathymetric uncertainty indicate that regional-scale (hundreds to thousands of kilometres) palaeogeographic changes influencing tidal inflow versus outflow can override local-scale (one to hundreds of kilometres) changes to tidal resonance and convergence effects (funnelling and shoaling), such as shelf width and shoreline geometry. Palaeotidal model results compare favourably to the distribution and sedimentary fabric of Oligo–Miocene, tide-influenced, shoreline–shelf successions in peripheral South China Sea basins. However, the preservation potential of tidal deposits is lower in open coastline environments, probably due to enhanced reworking during storms and river floods. This article is protected by copyright. All rights reserved.}\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract Numerical tidal modelling, when integrated with other geological datasets, can significantly inform the analysis of physical sedimentation processes and the depositional and preservational record of ancient tide-influenced shoreline–shelf systems. This is illustrated in the Oligo–Miocene of the South China Sea, which experienced significant changes in basin physiography and where tide-influenced, shoreline–shelf deposition is preserved in ca 10 sub-basins. Palaeogeographic reconstructions, palaeotidal modelling and regional sedimentary facies analysis have been integrated in order to evaluate the spatial–temporal evolution and physiographic controls on tidal sedimentation and preservation during the ca 25 Myr Oligo–Miocene record in the South China Sea. Palaeotidal modelling, using an astronomically-forced and global tidal model (Fluidity) at a maximum 10 km resolution, indicates that spring tides along Late Oligocene to Middle Miocene coastlines were predominantly mesotidal–macrotidal and capable of transporting sand, which reflects two main conditions: (i) increased tidal inflow through wider ocean connections to the Pacific Ocean; and (ii) tidal amplification resulting from constriction of the tidal wave in a ‘blind gulf’ type of basin morphology. Since the Middle to Late Miocene, a reduction in the amplitude and strength of tides in the South China Sea was mainly due to diminishing tidal inflow from the Pacific Ocean caused by the northward movement of the Philippines and Izu–Bonin–Mariana arc. Sensitivity tests to palaeogeographic and palaeobathymetric uncertainty indicate that regional-scale (hundreds to thousands of kilometres) palaeogeographic changes influencing tidal inflow versus outflow can override local-scale (one to hundreds of kilometres) changes to tidal resonance and convergence effects (funnelling and shoaling), such as shelf width and shoreline geometry. Palaeotidal model results compare favourably to the distribution and sedimentary fabric of Oligo–Miocene, tide-influenced, shoreline–shelf successions in peripheral South China Sea basins. However, the preservation potential of tidal deposits is lower in open coastline environments, probably due to enhanced reworking during storms and river floods. This article is protected by copyright. All rights reserved.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2017\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2017')\"\n      onkeypress=\"toggleGroup('group_2017')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2017</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"avdis-candy-hill-kramer-piggott-efficientunstructuredmeshgenerationformarinerenewableenergyapplications-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Efficient unstructured mesh generation for marine renewable energy applications.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Avdis, A.; Candy, A. S; Hill, J.; Kramer, S. C;  and Piggott, M. D\n</span>\n\n  \n\n</span>\n\n  <i>Renewable Energy</i>. September 2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.renene.2017.09.058\"\n     onclick=\"log_download('avdis-candy-hill-kramer-piggott-efficientunstructuredmeshgenerationformarinerenewableenergyapplications-2017', 'http://doi.org/10.1016/j.renene.2017.09.058', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/avdis-candy-hill-kramer-piggott-efficientunstructuredmeshgenerationformarinerenewableenergyapplications-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('avdis-candy-hill-kramer-piggott-efficientunstructuredmeshgenerationformarinerenewableenergyapplications-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Avdis2017-dv,\n  title    = &quot;{Efficient unstructured mesh generation for marine renewable\n              energy applications}&quot;,\n  author   = &quot;Avdis, Alexandros and Candy, Adam S and Hill, Jon and Kramer,\n              Stephan C and Piggott, Matthew D&quot;,\n  abstract = &quot;Abstract Renewable energy is the cornerstone of preventing\n              dangerous climate change whilst maintaining a robust energy\n              supply. Tidal energy will arguably play a critical role in the\n              renewable energy portfolio as it is both predictable and\n              reliable, and can be put in place across the globe. However,\n              installation may impact the local and regional ecology via\n              changes in tidal dynamics, sediment transport pathways or\n              bathymetric changes. In order to mitigate these effects, tidal\n              energy devices need to be modelled in order to predict\n              hydrodynamic changes. Robust mesh generation is a fundamental\n              component required for developing simulations with high accuracy.\n              However, mesh generation for coastal domains can be an elaborate\n              procedure. Here, we describe an approach combining mesh\n              generators with Geographical Information Systems. We demonstrate\n              robustness and efficiency by constructing a mesh with which to\n              examine the potential environmental impact of a tidal turbine\n              farm installation in the Orkney Islands. The mesh is then used\n              with two well-validated ocean models, to compare their flow\n              predictions with and without a turbine array. The results\n              demonstrate that it is possible to create an easy-to-use tool to\n              generate high-quality meshes for combined coastal engineering,\n              here tidal turbines, and coastal ocean simulations.&quot;,\n  journal  = &quot;Renewable Energy&quot;,\n  month    =  sep,\n  year     =  2017,\n  keywords = &quot;Mesh generation; Geographical Information Systems; Research Data\n              Management; Tidal turbine arrays; Renewable energy generation;\n              Pentland Firth&quot;,\n  issn     = &quot;0960-1481&quot;,\n  doi      = &quot;10.1016/j.renene.2017.09.058&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract Renewable energy is the cornerstone of preventing dangerous climate change whilst maintaining a robust energy supply. Tidal energy will arguably play a critical role in the renewable energy portfolio as it is both predictable and reliable, and can be put in place across the globe. However, installation may impact the local and regional ecology via changes in tidal dynamics, sediment transport pathways or bathymetric changes. In order to mitigate these effects, tidal energy devices need to be modelled in order to predict hydrodynamic changes. Robust mesh generation is a fundamental component required for developing simulations with high accuracy. However, mesh generation for coastal domains can be an elaborate procedure. Here, we describe an approach combining mesh generators with Geographical Information Systems. We demonstrate robustness and efficiency by constructing a mesh with which to examine the potential environmental impact of a tidal turbine farm installation in the Orkney Islands. The mesh is then used with two well-validated ocean models, to compare their flow predictions with and without a turbine array. The results demonstrate that it is possible to create an easy-to-use tool to generate high-quality meshes for combined coastal engineering, here tidal turbines, and coastal ocean simulations.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"dufeu-funke-kramer-culley-hill-halpern-piggott-thetradeoffbetweentidalturbinearrayyieldandimpactonflowamultiobjectiveoptimisationproblem-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  The trade-off between tidal-turbine array yield and impact on flow: A multi-objective optimisation problem.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  du Feu, R J; Funke, S W; Kramer, S C; Culley, D M; Hill, J; Halpern, B S;  and Piggott\n</span>\n\n  \n\n</span>\n\n  <i>Renewable Energy</i>, 114: 1247–1257. December 2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.renene.2017.07.081\"\n     onclick=\"log_download('dufeu-funke-kramer-culley-hill-halpern-piggott-thetradeoffbetweentidalturbinearrayyieldandimpactonflowamultiobjectiveoptimisationproblem-2017', 'http://doi.org/10.1016/j.renene.2017.07.081', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/dufeu-funke-kramer-culley-hill-halpern-piggott-thetradeoffbetweentidalturbinearrayyieldandimpactonflowamultiobjectiveoptimisationproblem-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('dufeu-funke-kramer-culley-hill-halpern-piggott-thetradeoffbetweentidalturbinearrayyieldandimpactonflowamultiobjectiveoptimisationproblem-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Du_Feu2017-ra,\n  title    = &quot;{The trade-off between tidal-turbine array yield and impact on\n              flow: A multi-objective optimisation problem}&quot;,\n  author   = &quot;du Feu, R J and Funke, S W and Kramer, S C and Culley, D M and\n              Hill, J and Halpern, B S and {Piggott}&quot;,\n  abstract = &quot;This paper introduces a new approach for investigating trade-offs\n              between different societal objectives in the design of\n              tidal-turbine arrays. This method is demonstrated through the\n              trade-off between the yield of an array, and the extent to which\n              that array alters the flow. This is posed as a multi-objective\n              optimisation problem, and the problem is investigated using the\n              array layout optimisation tool OpenTidalFarm. Motivated by\n              environmental concerns, OpenTidalFarm is adapted to not only\n              maximise array yield but also to minimise the effect of the array\n              upon the hydrodynamics of the region, specifically the flow\n              velocity. A linear scalarisation of the multi-objective\n              optimisation problem is solved for a series of different\n              weightings of the two conflicting objectives. Two idealised test\n              scenarios are evaluated and in each case a set of Pareto\n              solutions is found. These arrays are assessed for the power they\n              generate and the severity of change they cause in the flow\n              velocity. These analyses allow for the identification of\n              trade-offs between these two objectives, while the methods\n              proposed can similarly be applied to the two key societal\n              objectives of energy production and conservation, thus providing\n              information that could be valuable to stakeholders and\n              policymakers when making decisions on array design.&quot;,\n  journal  = &quot;Renewable Energy&quot;,\n  volume   =  114,\n  pages    = &quot;1247--1257&quot;,\n  month    =  dec,\n  year     =  2017,\n  keywords = &quot;Marine renewable energy; Tidal turbines; Gradient-based\n              optimisation; Multi-objective optimization; Pareto front;\n              Environmental impact&quot;,\n  issn     = &quot;0960-1481&quot;,\n  doi      = &quot;10.1016/j.renene.2017.07.081&quot;\n}\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  This paper introduces a new approach for investigating trade-offs between different societal objectives in the design of tidal-turbine arrays. This method is demonstrated through the trade-off between the yield of an array, and the extent to which that array alters the flow. This is posed as a multi-objective optimisation problem, and the problem is investigated using the array layout optimisation tool OpenTidalFarm. Motivated by environmental concerns, OpenTidalFarm is adapted to not only maximise array yield but also to minimise the effect of the array upon the hydrodynamics of the region, specifically the flow velocity. A linear scalarisation of the multi-objective optimisation problem is solved for a series of different weightings of the two conflicting objectives. Two idealised test scenarios are evaluated and in each case a set of Pareto solutions is found. These arrays are assessed for the power they generate and the severity of change they cause in the flow velocity. These analyses allow for the identification of trade-offs between these two objectives, while the methods proposed can similarly be applied to the two key societal objectives of energy production and conservation, thus providing information that could be valuable to stakeholders and policymakers when making decisions on array design.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"collins-avdis-allison-johnson-hill-piggott-amirhassan-damit-tidaldynamicsandmangrovecarbonsequestrationduringtheoligomioceneinthesouthchinasea-2017\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Tidal dynamics and mangrove carbon sequestration during the Oligo–Miocene in the South China Sea.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Collins, D. S; Avdis, A.; Allison, P. A; Johnson, H. D; Hill, J.; Piggott, M. D; Amir Hassan, M. H;  and Damit, A. R.\n</span>\n\n  \n\n</span>\n\n  <i>Nature communications</i>, 8: ncomms15698. June 2017.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1038/ncomms15698\"\n     onclick=\"log_download('collins-avdis-allison-johnson-hill-piggott-amirhassan-damit-tidaldynamicsandmangrovecarbonsequestrationduringtheoligomioceneinthesouthchinasea-2017', 'http://doi.org/10.1038/ncomms15698', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/collins-avdis-allison-johnson-hill-piggott-amirhassan-damit-tidaldynamicsandmangrovecarbonsequestrationduringtheoligomioceneinthesouthchinasea-2017\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('collins-avdis-allison-johnson-hill-piggott-amirhassan-damit-tidaldynamicsandmangrovecarbonsequestrationduringtheoligomioceneinthesouthchinasea-2017')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Collins2017-vs,\n  title     = &quot;{Tidal dynamics and mangrove carbon sequestration during the\n               Oligo--Miocene in the South China Sea}&quot;,\n  author    = &quot;Collins, Daniel S and Avdis, Alexandros and Allison, Peter A and\n               Johnson, Howard D and Hill, Jon and Piggott, Matthew D and Amir\n               Hassan, Meor H and Damit, Abdul Razak&quot;,\n  abstract  = &quot;Mangroves are important carbon-rich biomes, but their long-term\n               impact on the global carbon cycle is relatively unknown. Here,\n               the authors show that the Oligo--Miocene mangroves in the South\n               China Sea stored in excess of 4,000 Gt, demonstrating the\n               long-term impact of mang…&quot;,\n  journal   = &quot;Nature communications&quot;,\n  publisher = &quot;Nature Publishing Group&quot;,\n  volume    =  8,\n  pages     = &quot;ncomms15698&quot;,\n  month     =  jun,\n  year      =  2017,\n  language  = &quot;en&quot;,\n  issn      = &quot;2041-1723, 2041-1723&quot;,\n  doi       = &quot;10.1038/ncomms15698&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Mangroves are important carbon-rich biomes, but their long-term impact on the global carbon cycle is relatively unknown. Here, the authors show that the Oligo–Miocene mangroves in the South China Sea stored in excess of 4,000 Gt, demonstrating the long-term impact of mang…\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2016\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2016')\"\n      onkeypress=\"toggleGroup('group_2016')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2016</span>\n      <span class=\"bibbase_group_count\">\n        \n        (4)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"davis-hill-astrop-wills-globalcoolingasadriverofdiversificationinamajormarineclade-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Global cooling as a driver of diversification in a major marine clade.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Davis, K. E; Hill, J.; Astrop, T. I;  and Wills, M. A\n</span>\n\n  \n\n</span>\n\n  <i>Nature communications</i>, 7: 13003. October 2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1038/ncomms13003\"\n     onclick=\"log_download('davis-hill-astrop-wills-globalcoolingasadriverofdiversificationinamajormarineclade-2016', 'http://doi.org/10.1038/ncomms13003', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/davis-hill-astrop-wills-globalcoolingasadriverofdiversificationinamajormarineclade-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('davis-hill-astrop-wills-globalcoolingasadriverofdiversificationinamajormarineclade-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Davis2016-ah,\n  title       = &quot;{Global cooling as a driver of diversification in a major\n                 marine clade}&quot;,\n  author      = &quot;Davis, Katie E and Hill, Jon and Astrop, Tim I and Wills,\n                 Matthew A&quot;,\n  affiliation = &quot;Milner Centre for Evolution, Department of Biology and\n                 Biochemistry, The University of Bath, Bath BA2 7AY, UK.\n                 Environment Department, University of York, York YO10 5NG, UK.\n                 Milner Centre for Evolution, Department of Biology and\n                 Biochemistry, The University of Bath, Bath BA2 7AY, UK. Milner\n                 Centre for Evolution, Department of Biology and Biochemistry,\n                 The University of Bath, Bath BA2 7AY, UK.&quot;,\n  abstract    = &quot;Climate is a strong driver of global diversity and will become\n                 increasingly important as human influences drive temperature\n                 changes at unprecedented rates. Here we investigate\n                 diversification and speciation trends within a diverse group\n                 of aquatic crustaceans, the Anomura. We use a phylogenetic\n                 framework to demonstrate that speciation rate is correlated\n                 with global cooling across the entire tree, in contrast to\n                 previous studies. Additionally, we find that marine clades\n                 continue to show evidence of increased speciation rates with\n                 cooler global temperatures, while the single freshwater clade\n                 shows the opposite trend with speciation rates positively\n                 correlated to global warming. Our findings suggest that both\n                 global cooling and warming lead to diversification and that\n                 habitat plays a role in the responses of species to climate\n                 change. These results have important implications for our\n                 understanding of how extant biota respond to ongoing climate\n                 change and are of particular importance for conservation\n                 planning of marine ecosystems.&quot;,\n  journal     = &quot;Nature communications&quot;,\n  volume      =  7,\n  pages       = &quot;13003&quot;,\n  month       =  oct,\n  year        =  2016,\n  language    = &quot;en&quot;,\n  issn        = &quot;2041-1723&quot;,\n  pmid        = &quot;27701377&quot;,\n  doi         = &quot;10.1038/ncomms13003&quot;,\n  pmc         = &quot;PMC5059450&quot;\n}\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Climate is a strong driver of global diversity and will become increasingly important as human influences drive temperature changes at unprecedented rates. Here we investigate diversification and speciation trends within a diverse group of aquatic crustaceans, the Anomura. We use a phylogenetic framework to demonstrate that speciation rate is correlated with global cooling across the entire tree, in contrast to previous studies. Additionally, we find that marine clades continue to show evidence of increased speciation rates with cooler global temperatures, while the single freshwater clade shows the opposite trend with speciation rates positively correlated to global warming. Our findings suggest that both global cooling and warming lead to diversification and that habitat plays a role in the responses of species to climate change. These results have important implications for our understanding of how extant biota respond to ongoing climate change and are of particular importance for conservation planning of marine ecosystems.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"long-barlow-dawson-hill-innes-kelham-milne-dawson-lateglacialandholocenerelativesealevelchangesandfirstevidenceforthestoreggatsunamiinsutherlandscotland-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Lateglacial and Holocene relative sea-level changes and first evidence for the Storegga tsunami in Sutherland, Scotland.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Long, A. J; Barlow, N. L M; Dawson, S.; Hill, J.; Innes, J. B; Kelham, C.; Milne, F. D;  and Dawson, A.\n</span>\n\n  \n\n</span>\n\n  <i>Journal of Quaternary Science</i>, 31(3): 239–255. April 2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1002/jqs.2862\"\n     onclick=\"log_download('long-barlow-dawson-hill-innes-kelham-milne-dawson-lateglacialandholocenerelativesealevelchangesandfirstevidenceforthestoreggatsunamiinsutherlandscotland-2016', 'http://doi.org/10.1002/jqs.2862', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/long-barlow-dawson-hill-innes-kelham-milne-dawson-lateglacialandholocenerelativesealevelchangesandfirstevidenceforthestoreggatsunamiinsutherlandscotland-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('long-barlow-dawson-hill-innes-kelham-milne-dawson-lateglacialandholocenerelativesealevelchangesandfirstevidenceforthestoreggatsunamiinsutherlandscotland-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Long2016-nj,\n  title    = &quot;{Lateglacial and Holocene relative sea-level changes and first\n              evidence for the Storegga tsunami in Sutherland, Scotland}&quot;,\n  author   = &quot;Long, Antony J and Barlow, Natasha L M and Dawson, Sue and Hill,\n              Jon and Innes, James B and Kelham, Catherine and Milne, Fraser D\n              and Dawson, Alastair&quot;,\n  abstract = &quot;We reconstruct one of the longest relative sea-level (RSL)\n              records in north-west Europe from the north coast of mainland\n              Scotland, using data collected from three sites in Loch Eriboll\n              (Sutherland) that we combine with other studies from the region.\n              Following deglaciation, RSL fell from a Lateglacial highstand of\n              +6−8 m OD (Ordnance Datum = ca. mean sea level) at ca. 15 k cal a\n              BP to below present, then rose to an early Holocene highstand and\n              remained at ca. +1 m OD between ca. 7 and 3 k cal a BP, before\n              falling to present. We find no evidence for significant\n              differential Holocene glacio-isostatic adjustment between sites\n              on the north-west (Lochinver, Loch Laxford), north (Loch Eriboll)\n              and north-east (Wick) coast of mainland Scotland. This suggests\n              that the region was rapidly deglaciated and there was little\n              difference in ice loads across the region. From one site at the\n              head of Loch Eriboll we report the most westerly sedimentary\n              evidence for the early Holocene Storegga tsunami on the Scottish\n              mainland. The presence of the Storegga tsunami in Loch Eriboll is\n              predicted by a tsunami wave model, which suggests that the\n              tsunami impacted the entire north coast of Scotland and probably\n              also the Atlantic coastline of north-west Scotland.&quot;,\n  journal  = &quot;Journal of Quaternary Science&quot;,\n  volume   =  31,\n  number   =  3,\n  pages    = &quot;239--255&quot;,\n  month    =  apr,\n  year     =  2016,\n  keywords = &quot;glacio-isostatic adjustment; relative sea level; Storegga\n              landslide; Storegga tsunami; tsunami&quot;,\n  issn     = &quot;1099-1417&quot;,\n  doi      = &quot;10.1002/jqs.2862&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  We reconstruct one of the longest relative sea-level (RSL) records in north-west Europe from the north coast of mainland Scotland, using data collected from three sites in Loch Eriboll (Sutherland) that we combine with other studies from the region. Following deglaciation, RSL fell from a Lateglacial highstand of +6−8 m OD (Ordnance Datum = ca. mean sea level) at ca. 15 k cal a BP to below present, then rose to an early Holocene highstand and remained at ca. +1 m OD between ca. 7 and 3 k cal a BP, before falling to present. We find no evidence for significant differential Holocene glacio-isostatic adjustment between sites on the north-west (Lochinver, Loch Laxford), north (Loch Eriboll) and north-east (Wick) coast of mainland Scotland. This suggests that the region was rapidly deglaciated and there was little difference in ice loads across the region. From one site at the head of Loch Eriboll we report the most westerly sedimentary evidence for the early Holocene Storegga tsunami on the Scottish mainland. The presence of the Storegga tsunami in Loch Eriboll is predicted by a tsunami wave model, which suggests that the tsunami impacted the entire north coast of Scotland and probably also the Atlantic coastline of north-west Scotland.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"smith-hill-collins-piggott-kramer-parkinson-wilson-comparingapproachesfornumericalmodellingoftsunamigenerationbydeformablesubmarineslides-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Comparing approaches for numerical modelling of tsunami generation by deformable submarine slides.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Smith, R. C; Hill, J.; Collins, G. S; Piggott, M. D; Kramer, S. C; Parkinson, S. D;  and Wilson, C.\n</span>\n\n  \n\n</span>\n\n  <i>Ocean Modelling</i>, 100: 125–140. April 2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.ocemod.2016.02.007\"\n     onclick=\"log_download('smith-hill-collins-piggott-kramer-parkinson-wilson-comparingapproachesfornumericalmodellingoftsunamigenerationbydeformablesubmarineslides-2016', 'http://doi.org/10.1016/j.ocemod.2016.02.007', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/smith-hill-collins-piggott-kramer-parkinson-wilson-comparingapproachesfornumericalmodellingoftsunamigenerationbydeformablesubmarineslides-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('smith-hill-collins-piggott-kramer-parkinson-wilson-comparingapproachesfornumericalmodellingoftsunamigenerationbydeformablesubmarineslides-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Smith2016-dl,\n  title    = &quot;{Comparing approaches for numerical modelling of tsunami\n              generation by deformable submarine slides}&quot;,\n  author   = &quot;Smith, Rebecca C and Hill, Jon and Collins, Gareth S and Piggott,\n              Matthew D and Kramer, Stephan C and Parkinson, Samuel D and\n              Wilson, Cian&quot;,\n  abstract = &quot;Abstract Tsunami generated by submarine slides are arguably an\n              under-considered risk in comparison to earthquake-generated\n              tsunami. Numerical simulations of submarine slide-generated waves\n              can be used to identify the important factors in determining wave\n              characteristics. Here we use Fluidity, an open source finite\n              element code, to simulate waves generated by deformable submarine\n              slides. Fluidity uses flexible unstructured meshes combined with\n              adaptivity which alters the mesh topology and resolution based on\n              the simulation state, focussing or reducing resolution, when and\n              where it is required. Fluidity also allows a number of different\n              numerical approaches to be taken to simulate submarine slide\n              deformation, free-surface representation, and wave generation\n              within the same numerical framework. In this work we use a\n              multi-material approach, considering either two materials (slide\n              and water with a free surface) or three materials (slide, water\n              and air), as well as a sediment model (sediment, water and free\n              surface) approach. In all cases the slide is treated as a viscous\n              fluid. Our results are shown to be consistent with laboratory\n              experiments using a deformable submarine slide, and demonstrate\n              good agreement when compared with other numerical models. The\n              three different approaches for simulating submarine slide\n              dynamics and tsunami wave generation produce similar waveforms\n              and slide deformation geometries. However, each has its own\n              merits depending on the application. Mesh adaptivity is shown to\n              be able to reduce the computational cost without compromising the\n              accuracy of results.&quot;,\n  journal  = &quot;Ocean Modelling&quot;,\n  volume   =  100,\n  pages    = &quot;125--140&quot;,\n  month    =  apr,\n  year     =  2016,\n  keywords = &quot;Submarine Slide; Tsunami; Numerical Modelling; Validation;\n              Adaptive Mesh&quot;,\n  issn     = &quot;1463-5003&quot;,\n  doi      = &quot;10.1016/j.ocemod.2016.02.007&quot;\n}\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract Tsunami generated by submarine slides are arguably an under-considered risk in comparison to earthquake-generated tsunami. Numerical simulations of submarine slide-generated waves can be used to identify the important factors in determining wave characteristics. Here we use Fluidity, an open source finite element code, to simulate waves generated by deformable submarine slides. Fluidity uses flexible unstructured meshes combined with adaptivity which alters the mesh topology and resolution based on the simulation state, focussing or reducing resolution, when and where it is required. Fluidity also allows a number of different numerical approaches to be taken to simulate submarine slide deformation, free-surface representation, and wave generation within the same numerical framework. In this work we use a multi-material approach, considering either two materials (slide and water with a free surface) or three materials (slide, water and air), as well as a sediment model (sediment, water and free surface) approach. In all cases the slide is treated as a viscous fluid. Our results are shown to be consistent with laboratory experiments using a deformable submarine slide, and demonstrate good agreement when compared with other numerical models. The three different approaches for simulating submarine slide dynamics and tsunami wave generation produce similar waveforms and slide deformation geometries. However, each has its own merits depending on the application. Mesh adaptivity is shown to be able to reduce the computational cost without compromising the accuracy of results.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"webster-george-beaman-hill-pugabernabu-hinestrosa-abbey-daniell-submarinelandslidesonthegreatbarrierreefshelfedgeandupperslopeamechanismforgeneratingtsunamisonthenortheastaustraliancoast-2016\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Submarine landslides on the Great Barrier Reef shelf edge and upper slope: A mechanism for generating tsunamis on the north-east Australian coast?.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Webster, J. M; George, N. P J; Beaman, R. J; Hill, J.; Puga-Bernabéu, Á.; Hinestrosa, G.; Abbey, E. A;  and Daniell, J. J\n</span>\n\n  \n\n</span>\n\n  <i>Marine geology</i>, 371: 120–129. January 2016.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.margeo.2015.11.008\"\n     onclick=\"log_download('webster-george-beaman-hill-pugabernabu-hinestrosa-abbey-daniell-submarinelandslidesonthegreatbarrierreefshelfedgeandupperslopeamechanismforgeneratingtsunamisonthenortheastaustraliancoast-2016', 'http://doi.org/10.1016/j.margeo.2015.11.008', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/webster-george-beaman-hill-pugabernabu-hinestrosa-abbey-daniell-submarinelandslidesonthegreatbarrierreefshelfedgeandupperslopeamechanismforgeneratingtsunamisonthenortheastaustraliancoast-2016\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('webster-george-beaman-hill-pugabernabu-hinestrosa-abbey-daniell-submarinelandslidesonthegreatbarrierreefshelfedgeandupperslopeamechanismforgeneratingtsunamisonthenortheastaustraliancoast-2016')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Webster2016-hp,\n  title    = &quot;{Submarine landslides on the Great Barrier Reef shelf edge and\n              upper slope: A mechanism for generating tsunamis on the\n              north-east Australian coast?}&quot;,\n  author   = &quot;Webster, Jody M and George, Nicholas P J and Beaman, Robin J and\n              Hill, Jon and Puga-Bernab{\\&#x27;e}u, {\\&#x27;A}ngel and Hinestrosa,\n              Gustavo and Abbey, Elizabeth A and Daniell, James J&quot;,\n  abstract = &quot;Abstract Shallow (&lt; 200 m) submarine landslides influence margin\n              evolution and can produce devastating tsunamis, yet little is\n              known about these processes on mixed siliciclastic--carbonate\n              margins. We have discovered seven landslides along the shelf edge\n              and upper slope of the central Great Barrier Reef (GBR),\n              Australia. The largest shelf edge landslide is investigated in\n              detail and represents a collapse of a 7 km long section of the\n              shelf edge at 90 m water depth with coarse debris deposited up to\n              5.5 km away on the upper slope down to 250 m. The precise timing\n              and triggering mechanisms are uncertain but available chronologic\n              and seismic stratigraphic evidence suggests that this event\n              occurred during the last deglacial sea-level rise between 20 and\n              14 ka. Regional bathymetric data confirms that these shelf edge\n              and upper slope slides are restricted to the central GBR between\n              latitude 18° and 19°S, suggesting a spatial relationship between\n              the extensive Burdekin paleo-fluvial/delta system and shallow\n              landslide activity. This study highlights an important local\n              mechanism for the generation of tsunamis on this margin type, and\n              numerical simulations under present conditions confirm that a 2\n              to 3 m tsunami wave could be produced locally. However, we\n              consider that the risk of such slides, and their resulting\n              tsunamis, to the modern coastline is negligible due to their\n              relatively small size and the capacity of the GBR to dissipate\n              the wave energy.&quot;,\n  journal  = &quot;Marine geology&quot;,\n  volume   =  371,\n  pages    = &quot;120--129&quot;,\n  month    =  jan,\n  year     =  2016,\n  keywords = &quot;Great barrier reef; Continental shelf; Submarine landslides;\n              Tsunami; Numerical model; Sea-level change&quot;,\n  issn     = &quot;0025-3227&quot;,\n  doi      = &quot;10.1016/j.margeo.2015.11.008&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract Shallow (< 200 m) submarine landslides influence margin evolution and can produce devastating tsunamis, yet little is known about these processes on mixed siliciclastic–carbonate margins. We have discovered seven landslides along the shelf edge and upper slope of the central Great Barrier Reef (GBR), Australia. The largest shelf edge landslide is investigated in detail and represents a collapse of a 7 km long section of the shelf edge at 90 m water depth with coarse debris deposited up to 5.5 km away on the upper slope down to 250 m. The precise timing and triggering mechanisms are uncertain but available chronologic and seismic stratigraphic evidence suggests that this event occurred during the last deglacial sea-level rise between 20 and 14 ka. Regional bathymetric data confirms that these shelf edge and upper slope slides are restricted to the central GBR between latitude 18° and 19°S, suggesting a spatial relationship between the extensive Burdekin paleo-fluvial/delta system and shallow landslide activity. This study highlights an important local mechanism for the generation of tsunamis on this margin type, and numerical simulations under present conditions confirm that a 2 to 3 m tsunami wave could be produced locally. However, we consider that the risk of such slides, and their resulting tsunamis, to the modern coastline is negligible due to their relatively small size and the capacity of the GBR to dissipate the wave energy.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2015\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2015')\"\n      onkeypress=\"toggleGroup('group_2015')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2015</span>\n      <span class=\"bibbase_group_count\">\n        \n        (2)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"jordan-allison-hill-sutton-notallaragoniticmolluscsaremissingtaphonomyandsignificanceofauniqueshellylagerstttefromthejurassicofswbritain-2015\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Not all aragonitic molluscs are missing: taphonomy and significance of a unique shelly lagerstätte from the Jurassic of SW Britain.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Jordan, N.; Allison, P. A; Hill, J.;  and Sutton, M. D\n</span>\n\n  \n\n</span>\n\n  <i>Lethaia</i>. March 2015.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1111/let.12126\"\n     onclick=\"log_download('jordan-allison-hill-sutton-notallaragoniticmolluscsaremissingtaphonomyandsignificanceofauniqueshellylagerstttefromthejurassicofswbritain-2015', 'http://doi.org/10.1111/let.12126', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/jordan-allison-hill-sutton-notallaragoniticmolluscsaremissingtaphonomyandsignificanceofauniqueshellylagerstttefromthejurassicofswbritain-2015\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('jordan-allison-hill-sutton-notallaragoniticmolluscsaremissingtaphonomyandsignificanceofauniqueshellylagerstttefromthejurassicofswbritain-2015')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Jordan2015-tr,\n  title    = &quot;{Not all aragonitic molluscs are missing: taphonomy and\n              significance of a unique shelly lagerst{\\&quot;a}tte from the Jurassic\n              of SW Britain}&quot;,\n  author   = &quot;Jordan, Naomi and Allison, Peter A and Hill, Jon and Sutton, Mark\n              D&quot;,\n  abstract = &quot;The Blue Lias Formation at Lyme Regis (Dorset, UK) includes an\n              exceptional pavement of abundant large ammonites that accumulated\n              during a period of profound sedimentary condensation. Ammonites\n              were originally composed of aragonite, an unstable polymorph of\n              calcium carbonate, and such fossils are typically prone to\n              dissolution; the occurrence of a rich association of aragonitic\n              shells in a condensed bed is highly unusual. Aragonite\n              dissolution occurs when pore-water pH is reduced by the\n              oxidization of hydrogen sulphide close to the sediment-water\n              interface. Evidence suggests that, in this case, the oxygen\n              concentrations in the overlying water column were low during\n              deposition. This inhibited the oxidation of sulphides and the\n              associated lowering of pH, allowing aragonite to survive long\n              enough for the shell to be neomorphosed to calcite. The loss of\n              aragonite impacts upon estimates of past biodiversity and\n              carbonate accumulation rates. The preservational model presented\n              here implies that diagenetic loss of aragonite will be greatest\n              in those areas where dysoxic-anoxic sediment lies beneath an oxic\n              waterbody but least where the sediment and overlying water are\n              oxygen depleted. Unfortunately, this implies that preservational\n              bias through aragonite loss will be greatest in those biotopes\n              which are typically most diverse and least where biodiversity is\n              lowest due to oxygen restriction.&quot;,\n  journal  = &quot;Lethaia&quot;,\n  month    =  mar,\n  year     =  2015,\n  keywords = &quot;Ammonite; aragonite dissolution; carbonate; dysoxia; Lias;\n              taphonomy&quot;,\n  issn     = &quot;0024-1164, 1502-3931&quot;,\n  doi      = &quot;10.1111/let.12126&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  The Blue Lias Formation at Lyme Regis (Dorset, UK) includes an exceptional pavement of abundant large ammonites that accumulated during a period of profound sedimentary condensation. Ammonites were originally composed of aragonite, an unstable polymorph of calcium carbonate, and such fossils are typically prone to dissolution; the occurrence of a rich association of aragonitic shells in a condensed bed is highly unusual. Aragonite dissolution occurs when pore-water pH is reduced by the oxidization of hydrogen sulphide close to the sediment-water interface. Evidence suggests that, in this case, the oxygen concentrations in the overlying water column were low during deposition. This inhibited the oxidation of sulphides and the associated lowering of pH, allowing aragonite to survive long enough for the shell to be neomorphosed to calcite. The loss of aragonite impacts upon estimates of past biodiversity and carbonate accumulation rates. The preservational model presented here implies that diagenetic loss of aragonite will be greatest in those areas where dysoxic-anoxic sediment lies beneath an oxic waterbody but least where the sediment and overlying water are oxygen depleted. Unfortunately, this implies that preservational bias through aragonite loss will be greatest in those biotopes which are typically most diverse and least where biodiversity is lowest due to oxygen restriction.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"martinshort-hill-kramer-avdis-allison-piggott-tidalresourceextractioninthepentlandfirthukpotentialimpactsonflowregimeandsedimenttransportintheinnersoundofstroma-2015\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Tidal resource extraction in the Pentland Firth, UK: Potential impacts on flow regime and sediment transport in the Inner Sound of Stroma.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Martin-Short, R; Hill, J; Kramer, S C; Avdis, A; Allison, P A;  and Piggott, M D\n</span>\n\n  \n\n</span>\n\n  <i>Renewable Energy</i>, 76(0): 596–607. April 2015.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.renene.2014.11.079\"\n     onclick=\"log_download('martinshort-hill-kramer-avdis-allison-piggott-tidalresourceextractioninthepentlandfirthukpotentialimpactsonflowregimeandsedimenttransportintheinnersoundofstroma-2015', 'http://doi.org/10.1016/j.renene.2014.11.079', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/martinshort-hill-kramer-avdis-allison-piggott-tidalresourceextractioninthepentlandfirthukpotentialimpactsonflowregimeandsedimenttransportintheinnersoundofstroma-2015\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n  &nbsp;\n  <span class=\"bibbase_stats_paper\" style=\"color: #777;\">\n    <span>2 downloads</span>\n  </span>\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('martinshort-hill-kramer-avdis-allison-piggott-tidalresourceextractioninthepentlandfirthukpotentialimpactsonflowregimeandsedimenttransportintheinnersoundofstroma-2015')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Martin-Short2015-hq,\n  title    = &quot;{Tidal resource extraction in the Pentland Firth, UK: Potential\n              impacts on flow regime and sediment transport in the Inner Sound\n              of Stroma}&quot;,\n  author   = &quot;Martin-Short, R and Hill, J and Kramer, S C and Avdis, A and\n              Allison, P A and Piggott, M D&quot;,\n  abstract = &quot;Abstract Large-scale extraction of power from tidal streams\n              within the Pentland Firth is expected to be underway in the near\n              future. The Inner Sound of Stroma in particular has attracted\n              significant commercial interest. To understand potential\n              environmental impacts of the installation of a tidal turbine\n              array a case study based upon the Inner Sound is considered. A\n              numerical computational fluid dynamics model, Fluidity, is used\n              to conduct a series of depth-averaged simulations to investigate\n              velocity and bed shear stress changes due to the presence of\n              idealised tidal turbine arrays. The number of turbines is\n              increased from zero to 400. It is found that arrays in excess of\n              85 turbines have the potential to affect bed shear stress\n              distributions in such a way that the most favourable sites for\n              sediment accumulation migrate from the edges of the Inner Sound\n              towards its centre. Deposits of fine gravel and coarse sand are\n              indicated to occur within arrays of greater than 240 turbines\n              with removal of existing deposits in the shallower channel\n              margins also possible. The effects of the turbine array may be\n              seen several kilometres from the site which has implications not\n              only on sediment accumulation, but also on the benthic fauna.&quot;,\n  journal  = &quot;Renewable Energy&quot;,\n  volume   =  76,\n  number   =  0,\n  pages    = &quot;596--607&quot;,\n  month    =  apr,\n  year     =  2015,\n  keywords = &quot;Tidal energy; Modelling; Pentland Firth; Finite element&quot;,\n  issn     = &quot;0960-1481&quot;,\n  doi      = &quot;10.1016/j.renene.2014.11.079&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract Large-scale extraction of power from tidal streams within the Pentland Firth is expected to be underway in the near future. The Inner Sound of Stroma in particular has attracted significant commercial interest. To understand potential environmental impacts of the installation of a tidal turbine array a case study based upon the Inner Sound is considered. A numerical computational fluid dynamics model, Fluidity, is used to conduct a series of depth-averaged simulations to investigate velocity and bed shear stress changes due to the presence of idealised tidal turbine arrays. The number of turbines is increased from zero to 400. It is found that arrays in excess of 85 turbines have the potential to affect bed shear stress distributions in such a way that the most favourable sites for sediment accumulation migrate from the edges of the Inner Sound towards its centre. Deposits of fine gravel and coarse sand are indicated to occur within arrays of greater than 240 turbines with removal of existing deposits in the shallower channel margins also possible. The effects of the turbine array may be seen several kilometres from the site which has implications not only on sediment accumulation, but also on the benthic fauna.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2014\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2014')\"\n      onkeypress=\"toggleGroup('group_2014')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2014</span>\n      <span class=\"bibbase_group_count\">\n        \n        (5)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"candy-avdis-hill-gorman-piggott-integrationofgeographicinformationsystemframeworksintodomaindiscretisationandmeshingprocessesforgeophysicalmodels-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Integration of Geographic Information System frameworks into domain discretisation and meshing processes for geophysical models.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Candy, A S; Avdis, A; Hill, J; Gorman, G J;  and Piggott, M D\n</span>\n\n  \n\n</span>\n\n  <i>Geoscientific Model Development Discussions</i>, 7(5): 5993–6060.  2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/candy-avdis-hill-gorman-piggott-integrationofgeographicinformationsystemframeworksintodomaindiscretisationandmeshingprocessesforgeophysicalmodels-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('candy-avdis-hill-gorman-piggott-integrationofgeographicinformationsystemframeworksintodomaindiscretisationandmeshingprocessesforgeophysicalmodels-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Candy2014-vi,\n  title     = &quot;{Integration of Geographic Information System frameworks into\n               domain discretisation and meshing processes for geophysical\n               models}&quot;,\n  author    = &quot;Candy, A S and Avdis, A and Hill, J and Gorman, G J and Piggott,\n               M D&quot;,\n  abstract  = &quot;Abstract. Computational simulations of physical phenomena rely\n               on an accurate discretisation of the model domain. Numerical\n               models have increased in sophistication to a level where it is\n               possible to support terrain-following boundaries that conform\n               accurately to real physical interfaces, and resolve a multiscale\n               of spatial resolutions. Whilst simulation codes are maturing in\n               this area, pre-processing tools have not developed significantly\n               enough to competently initialise these problems in a rigorous,\n               efficient and recomputable ...&quot;,\n  journal   = &quot;Geoscientific Model Development Discussions&quot;,\n  publisher = &quot;Copernicus GmbH&quot;,\n  volume    =  7,\n  number    =  5,\n  pages     = &quot;5993--6060&quot;,\n  year      =  2014\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract. Computational simulations of physical phenomena rely on an accurate discretisation of the model domain. Numerical models have increased in sophistication to a level where it is possible to support terrain-following boundaries that conform accurately to real physical interfaces, and resolve a multiscale of spatial resolutions. Whilst simulation codes are maturing in this area, pre-processing tools have not developed significantly enough to competently initialise these problems in a rigorous, efficient and recomputable ...\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-popova-ham-piggott-srokosz-adaptingtolifeoceanbiogeochemicalmodellingandadaptiveremeshing-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Adapting to life: ocean biogeochemical modelling and adaptive remeshing.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J; Popova, E E; Ham, D A; Piggott, M D;  and Srokosz, M\n</span>\n\n  \n\n</span>\n\n  <i>Ocean Science</i>, 10(3): 323–343. May 2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.5194/os-10-323-2014\"\n     onclick=\"log_download('hill-popova-ham-piggott-srokosz-adaptingtolifeoceanbiogeochemicalmodellingandadaptiveremeshing-2014', 'http://doi.org/10.5194/os-10-323-2014', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-popova-ham-piggott-srokosz-adaptingtolifeoceanbiogeochemicalmodellingandadaptiveremeshing-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-popova-ham-piggott-srokosz-adaptingtolifeoceanbiogeochemicalmodellingandadaptiveremeshing-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2014-sx,\n  title   = &quot;{Adapting to life: ocean biogeochemical modelling and adaptive\n             remeshing}&quot;,\n  author  = &quot;Hill, J and Popova, E E and Ham, D A and Piggott, M D and Srokosz,\n             M&quot;,\n  journal = &quot;Ocean Science&quot;,\n  volume  =  10,\n  number  =  3,\n  pages   = &quot;323--343&quot;,\n  month   =  may,\n  year    =  2014,\n  issn    = &quot;1812-0784, 1812-0792&quot;,\n  doi     = &quot;10.5194/os-10-323-2014&quot;\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"parkinson-hill-piggott-allison-directnumericalsimulationsofparticleladendensitycurrentswithadaptivediscontinuousfiniteelements-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Direct numerical simulations of particle-laden density currents with adaptive, discontinuous finite elements.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Parkinson, S D; Hill, J; Piggott, M D;  and Allison, P A\n</span>\n\n  \n\n</span>\n\n  <i>Geoscientific Model Development</i>, 7(5): 1945–1960.  2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.5194/gmd-7-1945-2014\"\n     onclick=\"log_download('parkinson-hill-piggott-allison-directnumericalsimulationsofparticleladendensitycurrentswithadaptivediscontinuousfiniteelements-2014', 'http://doi.org/10.5194/gmd-7-1945-2014', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/parkinson-hill-piggott-allison-directnumericalsimulationsofparticleladendensitycurrentswithadaptivediscontinuousfiniteelements-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('parkinson-hill-piggott-allison-directnumericalsimulationsofparticleladendensitycurrentswithadaptivediscontinuousfiniteelements-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Parkinson2014-zx,\n  title   = &quot;{Direct numerical simulations of particle-laden density currents\n             with adaptive, discontinuous finite elements}&quot;,\n  author  = &quot;Parkinson, S D and Hill, J and Piggott, M D and Allison, P A&quot;,\n  journal = &quot;Geoscientific Model Development&quot;,\n  volume  =  7,\n  number  =  5,\n  pages   = &quot;1945--1960&quot;,\n  year    =  2014,\n  doi     = &quot;10.5194/gmd-7-1945-2014&quot;\n}\n\n% The entry below contains non-ASCII chars that could not be converted\n% to a LaTeX equivalent.\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-collins-avdis-kramer-piggott-howdoesmultiscalemodellingandinclusionofrealisticpalaeobathymetryaffectnumericalsimulationofthestoreggaslidetsunami-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  How does multiscale modelling and inclusion of realistic palaeobathymetry affect numerical simulation of the Storegga Slide tsunami?.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Collins, G. S; Avdis, A.; Kramer, S. C;  and Piggott, M. D\n</span>\n\n  \n\n</span>\n\n  <i>Ocean Modelling</i>, 83(0): 11–25. November 2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.ocemod.2014.08.007\"\n     onclick=\"log_download('hill-collins-avdis-kramer-piggott-howdoesmultiscalemodellingandinclusionofrealisticpalaeobathymetryaffectnumericalsimulationofthestoreggaslidetsunami-2014', 'http://doi.org/10.1016/j.ocemod.2014.08.007', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-collins-avdis-kramer-piggott-howdoesmultiscalemodellingandinclusionofrealisticpalaeobathymetryaffectnumericalsimulationofthestoreggaslidetsunami-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-collins-avdis-kramer-piggott-howdoesmultiscalemodellingandinclusionofrealisticpalaeobathymetryaffectnumericalsimulationofthestoreggaslidetsunami-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2014-jo,\n  title    = &quot;{How does multiscale modelling and inclusion of realistic\n              palaeobathymetry affect numerical simulation of the Storegga\n              Slide tsunami?}&quot;,\n  author   = &quot;Hill, Jon and Collins, Gareth S and Avdis, Alexandros and Kramer,\n              Stephan C and Piggott, Matthew D&quot;,\n  abstract = &quot;Abstract The ∼8.15 ka Storegga submarine slide was a large (∼3000\n              km3), tsunamigenic slide off the coast of Norway. The resulting\n              tsunami had run-up heights of around 10--20 m on the Norwegian\n              coast, over 12 m in Shetland, 3--6 m on the Scottish mainland\n              coast and reached as far as Greenland. Accurate numerical\n              simulations of Storegga require high spatial resolution near the\n              coasts, particularly near tsunami run-up observations, and also\n              in the slide region. However, as the computational domain must\n              span the whole of the Norwegian-Greenland sea, employing\n              uniformly high spatial resolution is computationally prohibitive.\n              To overcome this problem, we present a multiscale numerical model\n              of the Storegga slide-generated tsunami where spatial resolution\n              varies from 500 m to 50 km across the entire Norwegian-Greenland\n              sea domain to optimally resolve the slide region, important\n              coastlines and bathymetric changes. We compare results from our\n              multiscale model to previous results using constant-resolution\n              models and show that accounting for changes in bathymetry since\n              8.15 ka, neglected in previous numerical studies of the Storegga\n              slide-tsunami, improves the agreement between the model and\n              inferred run-up heights in specific locations, especially in the\n              Shetlands, where maximum run-up height increased from 8 m (modern\n              bathymetry) to 13 m (palaeobathymetry). By tracking the Storegga\n              tsunami as far south as the southern North sea, we also found\n              that wave heights were high enough to inundate Doggerland, an\n              island in the southern North Sea prior to sea level rise over the\n              last 8 ka.&quot;,\n  journal  = &quot;Ocean Modelling&quot;,\n  volume   =  83,\n  number   =  0,\n  pages    = &quot;11--25&quot;,\n  month    =  nov,\n  year     =  2014,\n  keywords = &quot;Submarine slide; Storegga; Tsunami; Numerical modelling;\n              Multiscale&quot;,\n  issn     = &quot;1463-5003&quot;,\n  doi      = &quot;10.1016/j.ocemod.2014.08.007&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Abstract The ∼8.15 ka Storegga submarine slide was a large (∼3000 km3), tsunamigenic slide off the coast of Norway. The resulting tsunami had run-up heights of around 10–20 m on the Norwegian coast, over 12 m in Shetland, 3–6 m on the Scottish mainland coast and reached as far as Greenland. Accurate numerical simulations of Storegga require high spatial resolution near the coasts, particularly near tsunami run-up observations, and also in the slide region. However, as the computational domain must span the whole of the Norwegian-Greenland sea, employing uniformly high spatial resolution is computationally prohibitive. To overcome this problem, we present a multiscale numerical model of the Storegga slide-generated tsunami where spatial resolution varies from 500 m to 50 km across the entire Norwegian-Greenland sea domain to optimally resolve the slide region, important coastlines and bathymetric changes. We compare results from our multiscale model to previous results using constant-resolution models and show that accounting for changes in bathymetry since 8.15 ka, neglected in previous numerical studies of the Storegga slide-tsunami, improves the agreement between the model and inferred run-up heights in specific locations, especially in the Shetlands, where maximum run-up height increased from 8 m (modern bathymetry) to 13 m (palaeobathymetry). By tracking the Storegga tsunami as far south as the southern North sea, we also found that wave heights were high enough to inundate Doggerland, an island in the southern North Sea prior to sea level rise over the last 8 ka.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-davis-thesupertreetoolkit2anewandimprovedsoftwarepackagewithagraphicaluserinterfaceforsupertreeconstruction-2014\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  The Supertree Toolkit 2: a new and improved software package with a Graphical User Interface for supertree construction.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.;  and Davis, K.\n</span>\n\n  \n\n</span>\n\n  <i>Biodiversity Data Journal</i>, 2: e1053. March 2014.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.3897/BDJ.2.e1053\"\n     onclick=\"log_download('hill-davis-thesupertreetoolkit2anewandimprovedsoftwarepackagewithagraphicaluserinterfaceforsupertreeconstruction-2014', 'http://doi.org/10.3897/BDJ.2.e1053', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-davis-thesupertreetoolkit2anewandimprovedsoftwarepackagewithagraphicaluserinterfaceforsupertreeconstruction-2014\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-davis-thesupertreetoolkit2anewandimprovedsoftwarepackagewithagraphicaluserinterfaceforsupertreeconstruction-2014')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2014-bg,\n  title     = &quot;{The Supertree Toolkit 2: a new and improved software package\n               with a Graphical User Interface for supertree construction}&quot;,\n  author    = &quot;Hill, Jon and Davis, Katie&quot;,\n  abstract  = &quot;Building large supertrees involves the collection, storage, and\n               processing of thousands of individual phylogenies to create\n               large phylogenies with thousands to tens of thousands of taxa.\n               Such large phylogenies are useful for macroevolutionary studies,\n               comparative biology and in conservation and biodiversity. No\n               easy to use and fully integrated software package currently\n               exists to carry out this task. Here, we present a new\n               Python-based software package that uses well defined XML schema\n               to manage both data and metadata. It builds on previous versions\n               by 1) including new processing steps, such as Safe Taxonomic\n               Reduction, 2) using a user-friendly GUI that guides the user to\n               complete at least the minimum information required and includes\n               context-sensitive documentation, and 3) a revised storage format\n               that integrates both tree- and meta-data into a single file.\n               These data can then be manipulated according to a well-defined,\n               but flexible, processing pipeline using either the GUI or a\n               command-line based tool. Processing steps include standardising\n               names, deleting or replacing taxa, ensuring adequate taxonomic\n               overlap, ensuring data independence, and safe taxonomic\n               reduction. This software has been successfully used to store and\n               process data consisting of over 1000 trees ready for analyses\n               using standard supertree methods. This software makes large\n               supertree creation a much easier task and provides far greater\n               flexibility for further work.&quot;,\n  journal   = &quot;Biodiversity Data Journal&quot;,\n  publisher = &quot;Pensoft Publishers&quot;,\n  volume    =  2,\n  pages     = &quot;e1053&quot;,\n  month     =  mar,\n  year      =  2014,\n  issn      = &quot;1314-2828, 1314-2828&quot;,\n  doi       = &quot;10.3897/BDJ.2.e1053&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Building large supertrees involves the collection, storage, and processing of thousands of individual phylogenies to create large phylogenies with thousands to tens of thousands of taxa. Such large phylogenies are useful for macroevolutionary studies, comparative biology and in conservation and biodiversity. No easy to use and fully integrated software package currently exists to carry out this task. Here, we present a new Python-based software package that uses well defined XML schema to manage both data and metadata. It builds on previous versions by 1) including new processing steps, such as Safe Taxonomic Reduction, 2) using a user-friendly GUI that guides the user to complete at least the minimum information required and includes context-sensitive documentation, and 3) a revised storage format that integrates both tree- and meta-data into a single file. These data can then be manipulated according to a well-defined, but flexible, processing pipeline using either the GUI or a command-line based tool. Processing steps include standardising names, deleting or replacing taxa, ensuring adequate taxonomic overlap, ensuring data independence, and safe taxonomic reduction. This software has been successfully used to store and process data consisting of over 1000 trees ready for analyses using standard supertree methods. This software makes large supertree creation a much easier task and provides far greater flexibility for further work.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2012\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2012')\"\n      onkeypress=\"toggleGroup('group_2012')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2012</span>\n      <span class=\"bibbase_group_count\">\n        \n        (3)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"piotrowski-mcgilvary-sloan-mewissen-lloyd-forster-mitchell-ghazal-etal-exploitingparallelrinthecloudwithsprint-2012\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Exploiting Parallel R in the Cloud with SPRINT.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Piotrowski, M; McGilvary, G A; Sloan, T M; Mewissen, M; Lloyd, A D; Forster, T; Mitchell, L; Ghazal, P;  and Hill, J\n</span>\n\n  \n\n</span>\n\n  <i>Methods of information in medicine</i>, 52(1): 80–90. December 2012.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.3414/ME11-02-0039\"\n     onclick=\"log_download('piotrowski-mcgilvary-sloan-mewissen-lloyd-forster-mitchell-ghazal-etal-exploitingparallelrinthecloudwithsprint-2012', 'http://doi.org/10.3414/ME11-02-0039', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/piotrowski-mcgilvary-sloan-mewissen-lloyd-forster-mitchell-ghazal-etal-exploitingparallelrinthecloudwithsprint-2012\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('piotrowski-mcgilvary-sloan-mewissen-lloyd-forster-mitchell-ghazal-etal-exploitingparallelrinthecloudwithsprint-2012')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Piotrowski2012-lc,\n  title   = &quot;{Exploiting Parallel R in the Cloud with SPRINT}&quot;,\n  author  = &quot;Piotrowski, M and McGilvary, G A and Sloan, T M and Mewissen, M\n             and Lloyd, A D and Forster, T and Mitchell, L and Ghazal, P and\n             Hill, J&quot;,\n  journal = &quot;Methods of information in medicine&quot;,\n  volume  =  52,\n  number  =  1,\n  pages   = &quot;80--90&quot;,\n  month   =  dec,\n  year    =  2012,\n  issn    = &quot;0026-1270&quot;,\n  doi     = &quot;10.3414/ME11-02-0039&quot;\n}\n\n</pre>\n</div>\n\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-piggott-ham-popova-srokosz-ontheperformanceofagenericlengthscaleturbulencemodelwithinanadaptivefiniteelementoceanmodel-2012\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  On the performance of a generic length scale turbulence model within an adaptive finite element ocean model.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Piggott, M.; Ham, D.; Popova, E.;  and Srokosz, M.\n</span>\n\n  \n\n</span>\n\n  <i>Ocean Modelling</i>, 56: 1–15. July 2012.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.ocemod.2012.07.003\"\n     onclick=\"log_download('hill-piggott-ham-popova-srokosz-ontheperformanceofagenericlengthscaleturbulencemodelwithinanadaptivefiniteelementoceanmodel-2012', 'http://doi.org/10.1016/j.ocemod.2012.07.003', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-piggott-ham-popova-srokosz-ontheperformanceofagenericlengthscaleturbulencemodelwithinanadaptivefiniteelementoceanmodel-2012\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-piggott-ham-popova-srokosz-ontheperformanceofagenericlengthscaleturbulencemodelwithinanadaptivefiniteelementoceanmodel-2012')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2012-kf,\n  title    = &quot;{On the performance of a generic length scale turbulence model\n              within an adaptive finite element ocean model}&quot;,\n  author   = &quot;Hill, J. and Piggott, M.D. and Ham, D.A. and Popova, E.E. and\n              Srokosz, M.A.&quot;,\n  abstract = &quot;Research into the use of unstructured mesh methods for ocean\n              modelling has been growing steadily in the last few years. One\n              advanta ge of using unstructured meshes is that one can\n              concentrate resolution where it is needed. In addition, dynamic\n              adaptive mesh optimisation (DAM O) strategies allow resolution to\n              be concentrated when this is required. Despite the advantage that\n              DAMO gives in terms of improving the spatia l resolution where\n              and when required, small-scale turbulence in the oceans still\n              requires parameterisation. A two-equation, generic length scal e\n              (GLS) turbulence model (one equation for turbulent kinetic energy\n              and another for a generic turbulence length-scale quantity) adds\n              this param eterisation and can be used in conjunction with\n              adaptive mesh techniques. In this paper, an implementation of the\n              GLS turbulence parameterisati on is detailed in a\n              non-hydrostatic, finite-element, unstructured mesh ocean model,\n              Fluidity-ICOM. The implementation is validated by comparing to\n              both a laboratory-scale experiment and real-world observations,\n              on both fixed and adaptive meshes. The model performs well,\n              matching labora tory and observed data, with resolution being\n              adjusted as necessary by DAMO. Flexibility in the prognostic\n              fields used to construct the error m etric used in DAMO is\n              required to ensure best performance. Moreover, the adaptive mesh\n              models perform as well as fixed mesh models in terms of root mean\n              square error to observation or theoretical mixed layer depths,\n              but uses fewer elements and hence has a reduced computational\n              cost.&quot;,\n  journal  = &quot;Ocean Modelling&quot;,\n  volume   =  56,\n  pages    = &quot;1--15&quot;,\n  month    =  jul,\n  year     =  2012,\n  keywords = &quot;adaptive mesh,finite element,turbulence\n              parameterisation,unstructured mesh&quot;,\n  issn     = &quot;14635003&quot;,\n  doi      = &quot;10.1016/j.ocemod.2012.07.003&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Research into the use of unstructured mesh methods for ocean modelling has been growing steadily in the last few years. One advanta ge of using unstructured meshes is that one can concentrate resolution where it is needed. In addition, dynamic adaptive mesh optimisation (DAM O) strategies allow resolution to be concentrated when this is required. Despite the advantage that DAMO gives in terms of improving the spatia l resolution where and when required, small-scale turbulence in the oceans still requires parameterisation. A two-equation, generic length scal e (GLS) turbulence model (one equation for turbulent kinetic energy and another for a generic turbulence length-scale quantity) adds this param eterisation and can be used in conjunction with adaptive mesh techniques. In this paper, an implementation of the GLS turbulence parameterisati on is detailed in a non-hydrostatic, finite-element, unstructured mesh ocean model, Fluidity-ICOM. The implementation is validated by comparing to both a laboratory-scale experiment and real-world observations, on both fixed and adaptive meshes. The model performs well, matching labora tory and observed data, with resolution being adjusted as necessary by DAMO. Flexibility in the prognostic fields used to construct the error m etric used in DAMO is required to ensure best performance. Moreover, the adaptive mesh models perform as well as fixed mesh models in terms of root mean square error to observation or theoretical mixed layer depths, but uses fewer elements and hence has a reduced computational cost.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"hill-wood-curtis-tetzlaff-preservationofforcingsignalsinshallowwatercarbonatesediments-2012\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Preservation of forcing signals in shallow water carbonate sediments.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Wood, R.; Curtis, A.;  and Tetzlaff, D. M.\n</span>\n\n  \n\n</span>\n\n  <i>Sedimentary geology</i>, 275-276(1): 79–92. July 2012.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.sedgeo.2012.07.017\"\n     onclick=\"log_download('hill-wood-curtis-tetzlaff-preservationofforcingsignalsinshallowwatercarbonatesediments-2012', 'http://doi.org/10.1016/j.sedgeo.2012.07.017', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-wood-curtis-tetzlaff-preservationofforcingsignalsinshallowwatercarbonatesediments-2012\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-wood-curtis-tetzlaff-preservationofforcingsignalsinshallowwatercarbonatesediments-2012')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2012-gg,\n  title    = &quot;{Preservation of forcing signals in shallow water carbonate\n              sediments}&quot;,\n  author   = &quot;Hill, Jon and Wood, Rachel and Curtis, Andrew and Tetzlaff,\n              Daniel M.&quot;,\n  abstract = &quot;No consensus has been reached on whether the metre-scale cycles\n              that commonly occur in peritidal carbonates are predominately a\n              product of external relative sea-level variations (allocycles) or\n              an intrinsic property of carbonate production generated via the\n              interaction of non-linear processes (autocycles). For any forcing\n              signal such as eustatic sea-level change, to be detectable in\n              stratigraphy its effects must be preserved. Here, a\n              deterministic, three-dimensional geological process model is used\n              to explore how such cycles are preserved in the geological record\n              in the presence of autocyclic processes. Each simulation produced\n              cycle thickness distributions that are statistically\n              indistinguishable from a theoretical Poisson process, regardless\n              of whether auto- or allo-cycles dominated. Spectral analysis of\n              depositional time series constructed from idealised geological\n              sections showed that all detectable signals occurred within the\n              Milankovitch forcing frequency bands, even when no Milankovitch\n              forcing was present. Thus, it is deduced that from any geological\n              section alone, external forcing signals are detectable but are\n              not distinguishable from autocyclically produced signals.\n              Interestingly, there is no correlation between the percentage of\n              sediment preserved and the accuracy with which signals are\n              detectable in the preserved sediment: in some model realisations,\n              even with preservation as low as 40\\%, the correct forcing signal\n              can be detected accurately while, conversely, sections with\n              preservation as high as 90\\% can have poor signal preservation.\n              The reverse can also be true in other models. It is therefore\n              concluded that distinguishing allocyclic and autocyclic forcing\n              in shallow marine or peritidal carbonate successions is likely to\n              be extremely difficult except in cases of extraordinary\n              sedimentary preservation and dating accuracy.&quot;,\n  journal  = &quot;Sedimentary geology&quot;,\n  volume   = &quot;275-276&quot;,\n  number   =  1,\n  pages    = &quot;79--92&quot;,\n  month    =  jul,\n  year     =  2012,\n  keywords = &quot;carbonate sedimentation,cyclicity,forward\n              modelling,preservation,spectral analysis&quot;,\n  issn     = &quot;0037-0738&quot;,\n  doi      = &quot;10.1016/j.sedgeo.2012.07.017&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  No consensus has been reached on whether the metre-scale cycles that commonly occur in peritidal carbonates are predominately a product of external relative sea-level variations (allocycles) or an intrinsic property of carbonate production generated via the interaction of non-linear processes (autocycles). For any forcing signal such as eustatic sea-level change, to be detectable in stratigraphy its effects must be preserved. Here, a deterministic, three-dimensional geological process model is used to explore how such cycles are preserved in the geological record in the presence of autocyclic processes. Each simulation produced cycle thickness distributions that are statistically indistinguishable from a theoretical Poisson process, regardless of whether auto- or allo-cycles dominated. Spectral analysis of depositional time series constructed from idealised geological sections showed that all detectable signals occurred within the Milankovitch forcing frequency bands, even when no Milankovitch forcing was present. Thus, it is deduced that from any geological section alone, external forcing signals are detectable but are not distinguishable from autocyclically produced signals. Interestingly, there is no correlation between the percentage of sediment preserved and the accuracy with which signals are detectable in the preserved sediment: in some model realisations, even with preservation as low as 40%, the correct forcing signal can be detected accurately while, conversely, sections with preservation as high as 90% can have poor signal preservation. The reverse can also be true in other models. It is therefore concluded that distinguishing allocyclic and autocyclic forcing in shallow marine or peritidal carbonate successions is likely to be extremely difficult except in cases of extraordinary sedimentary preservation and dating accuracy.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2011\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2011')\"\n      onkeypress=\"toggleGroup('group_2011')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2011</span>\n      <span class=\"bibbase_group_count\">\n        \n        (2)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"piotrowski-sloan-mewsissen-forster-mitchell-petrou-dobrezelecki-ghazal-etal-optimisationandparallelisationofthepartitioningaroundmedoidsfunctioninr-2011\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Optimisation and parallelisation of the partitioning around medoids function in R.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Piotrowski, M; Sloan, T M; Mewsissen, M; Forster, T; Mitchell, L; Petrou, S; Dobrezelecki, B; Ghazal, P; Trew, A;  and Hill, J\n</span>\n\n  \n\n</span>\n\n  In <i>High Performance Computing and Simulation (HPCS), 2011 International Conference on</i>, pages 707–713, July 2011. \n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1109/HPCSim.2011.5999896\"\n     onclick=\"log_download('piotrowski-sloan-mewsissen-forster-mitchell-petrou-dobrezelecki-ghazal-etal-optimisationandparallelisationofthepartitioningaroundmedoidsfunctioninr-2011', 'http://doi.org/10.1109/HPCSim.2011.5999896', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/piotrowski-sloan-mewsissen-forster-mitchell-petrou-dobrezelecki-ghazal-etal-optimisationandparallelisationofthepartitioningaroundmedoidsfunctioninr-2011\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('piotrowski-sloan-mewsissen-forster-mitchell-petrou-dobrezelecki-ghazal-etal-optimisationandparallelisationofthepartitioningaroundmedoidsfunctioninr-2011')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@INPROCEEDINGS{Piotrowski2011-mo,\n  title     = &quot;{Optimisation and parallelisation of the partitioning around\n               medoids function in R}&quot;,\n  booktitle = &quot;{High Performance Computing and Simulation (HPCS), 2011\n               International Conference on}&quot;,\n  author    = &quot;Piotrowski, M and Sloan, T M and Mewsissen, M and Forster, T and\n               Mitchell, L and Petrou, S and Dobrezelecki, B and Ghazal, P and\n               Trew, A and Hill, J&quot;,\n  abstract  = &quot;R is a free statistical programming language commonly used for\n               the analysis of high-throughput microarray and other data. It is\n               currently unable to easily utilise multi processor architectures\n               without substantial changes to existing R scripts. Further,\n               working with large volumes of data often leads to slow\n               processing and even memory allocation faults. A recent survey\n               highlighted clustering algorithms as both computation and data\n               intensive bottlenecks in post-genomic data analyses. These\n               algorithms aim to sort numeric vectors (such as gene expression\n               profiles) into groups by minimising vector distances within\n               groups and maximising them between groups. This paper describes\n               the optimisation and parallelisation of a popular clustering\n               algorithm, partitioning around medoids (PAM), for the Simple\n               Parallel R INTerface (SPRINT). SPRINT allows R users to exploit\n               high performance computing systems without expert knowledge of\n               such systems. This paper reports on a serial optimisation of the\n               original code and a subsequent parallel implementation. The\n               parallel implementation enables the processing of data sets that\n               exceed the available physical memory and can yield, depending on\n               the data set, over 100-fold increase in performance.&quot;,\n  pages     = &quot;707--713&quot;,\n  month     =  jul,\n  year      =  2011,\n  keywords  = &quot;biology computing;genomics;microprocessor chips;multiprocessing\n               systems;optimisation;parallel architectures;parallel\n               processing;pattern clustering;statistical analysis;R\n               scripts;clustering algorithms;data intensive bottlenecks;high\n               throughput microarray;medoids function;memory allocation\n               faults;multiprocessor architectures;optimisation;partitioning\n               around medoids;partitioning parallelisation;post genomic data\n               analyses;simple parallel R interface;statistical programming\n               language;Algorithm design and analysis;Benchmark\n               testing;Clustering algorithms;High performance computing;Memory\n               management;Optimization;Partitioning algorithms;Clustering;High\n               Performance Computing;Message Passing Interface;Microarray;R&quot;,\n  doi       = &quot;10.1109/HPCSim.2011.5999896&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  R is a free statistical programming language commonly used for the analysis of high-throughput microarray and other data. It is currently unable to easily utilise multi processor architectures without substantial changes to existing R scripts. Further, working with large volumes of data often leads to slow processing and even memory allocation faults. A recent survey highlighted clustering algorithms as both computation and data intensive bottlenecks in post-genomic data analyses. These algorithms aim to sort numeric vectors (such as gene expression profiles) into groups by minimising vector distances within groups and maximising them between groups. This paper describes the optimisation and parallelisation of a popular clustering algorithm, partitioning around medoids (PAM), for the Simple Parallel R INTerface (SPRINT). SPRINT allows R users to exploit high performance computing systems without expert knowledge of such systems. This paper reports on a serial optimisation of the original code and a subsequent parallel implementation. The parallel implementation enables the processing of data sets that exceed the available physical memory and can yield, depending on the data set, over 100-fold increase in performance.\n</div>\n\n\n</div>\n\n\n  <div class=\"bibbase_paper\" id=\"petrou-sloan-mewissen-forster-piotrowski-dobrzelecki-ghazal-trew-etal-optimizationofaparallelpermutationtestingfunctionforthesprintrpackage-2011\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Optimization of a parallel permutation testing function for the SPRINT R package.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Petrou, S.; Sloan, T. M; Mewissen, M.; Forster, T.; Piotrowski, M.; Dobrzelecki, B.; Ghazal, P.; Trew, A.;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>Concurrency and computation: practice & experience</i>, 23(17): 2258–2268. December 2011.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1002/cpe.1787\"\n     onclick=\"log_download('petrou-sloan-mewissen-forster-piotrowski-dobrzelecki-ghazal-trew-etal-optimizationofaparallelpermutationtestingfunctionforthesprintrpackage-2011', 'http://doi.org/10.1002/cpe.1787', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/petrou-sloan-mewissen-forster-piotrowski-dobrzelecki-ghazal-trew-etal-optimizationofaparallelpermutationtestingfunctionforthesprintrpackage-2011\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('petrou-sloan-mewissen-forster-piotrowski-dobrzelecki-ghazal-trew-etal-optimizationofaparallelpermutationtestingfunctionforthesprintrpackage-2011')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Petrou2011-sv,\n  title       = &quot;{Optimization of a parallel permutation testing function for\n                 the SPRINT R package}&quot;,\n  author      = &quot;Petrou, Savvas and Sloan, Terence M and Mewissen, Muriel and\n                 Forster, Thorsten and Piotrowski, Michal and Dobrzelecki,\n                 Bartosz and Ghazal, Peter and Trew, Arthur and Hill, Jon&quot;,\n  affiliation = &quot;Edinburgh Parallel Computing Centre, University of Edinburgh\n                 Edinburgh, EH9 3JZ, UK.&quot;,\n  abstract    = &quot;The statistical language R and its Bioconductor package are\n                 favoured by many biostatisticians for processing microarray\n                 data. The amount of data produced by some analyses has reached\n                 the limits of many common bioinformatics computing\n                 infrastructures. High Performance Computing systems offer a\n                 solution to this issue. The Simple Parallel R Interface\n                 (SPRINT) is a package that provides biostatisticians with easy\n                 access to High Performance Computing systems and allows the\n                 addition of parallelized functions to R. Previous work has\n                 established that the SPRINT implementation of an R permutation\n                 testing function has close to optimal scaling on up to 512\n                 processors on a supercomputer. Access to supercomputers,\n                 however, is not always possible, and so the work presented\n                 here compares the performance of the SPRINT implementation on\n                 a supercomputer with benchmarks on a range of platforms\n                 including cloud resources and a common desktop machine with\n                 multiprocessing capabilities. Copyright \\copyright{} 2011 John\n                 Wiley \\&amp; Sons, Ltd.&quot;,\n  journal     = &quot;Concurrency and computation: practice \\&amp; experience&quot;,\n  volume      =  23,\n  number      =  17,\n  pages       = &quot;2258--2268&quot;,\n  month       =  dec,\n  year        =  2011,\n  issn        = &quot;1532-0626&quot;,\n  pmid        = &quot;23335858&quot;,\n  doi         = &quot;10.1002/cpe.1787&quot;,\n  pmc         = &quot;PMC3546371&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  The statistical language R and its Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by some analyses has reached the limits of many common bioinformatics computing infrastructures. High Performance Computing systems offer a solution to this issue. The Simple Parallel R Interface (SPRINT) is a package that provides biostatisticians with easy access to High Performance Computing systems and allows the addition of parallelized functions to R. Previous work has established that the SPRINT implementation of an R permutation testing function has close to optimal scaling on up to 512 processors on a supercomputer. Access to supercomputers, however, is not always possible, and so the work presented here compares the performance of the SPRINT implementation on a supercomputer with benchmarks on a range of platforms including cloud resources and a common desktop machine with multiprocessing capabilities. Copyright © 2011 John Wiley & Sons, Ltd.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2010\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2010')\"\n      onkeypress=\"toggleGroup('group_2010')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2010</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"davis-hill-thesupertreetoolkit-2010\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  The supertree tool kit.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Davis, K. E;  and Hill, J.\n</span>\n\n  \n\n</span>\n\n  <i>BMC research notes</i>, 3: 95. April 2010.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1186/1756-0500-3-95\"\n     onclick=\"log_download('davis-hill-thesupertreetoolkit-2010', 'http://doi.org/10.1186/1756-0500-3-95', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/davis-hill-thesupertreetoolkit-2010\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('davis-hill-thesupertreetoolkit-2010')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Davis2010-hn,\n  title       = &quot;{The supertree tool kit}&quot;,\n  author      = &quot;Davis, Katie E and Hill, Jon&quot;,\n  affiliation = &quot;Faculty of Biomedical \\&amp; Life Sciences, Division of Ecology \\&amp;\n                 Evolutionary Biology, Graham Kerr Building, University of\n                 Glasgow, Glasgow, G12 8QQ, UK. k.davis@udcf.gla.ac.uk.&quot;,\n  abstract    = &quot;BACKGROUND: Large phylogenies are crucial for many areas of\n                 biological research. One method of creating such large\n                 phylogenies is the supertree method, but creating supertrees\n                 containing thousands of taxa, and hence providing a\n                 comprehensive phylogeny, requires hundred or even thousands of\n                 source input trees. Managing and processing these data in a\n                 systematic and error-free manner is challenging and will\n                 become even more so as supertrees contain ever increasing\n                 numbers of taxa. Protocols for processing input source\n                 phylogenies have been proposed to ensure data quality, but no\n                 robust software implementations of these protocols as yet\n                 exist. FINDINGS: The aim of the Supertree Tool Kit (STK) is to\n                 aid in the collection, storage and processing of input source\n                 trees for use in supertree analysis. It is therefore\n                 invaluable when creating supertrees containing thousands of\n                 taxa and hundreds of source trees. The STK is a Perl module\n                 with executable scripts to carry out various steps in the\n                 processing protocols. In order to aid processing we have added\n                 meta-data, via XML, to each tree which contains information\n                 such as the bibliographic source information for the tree and\n                 how the data were derived, for instance the character data\n                 used to carry out the original analysis. These data are\n                 essential parts of previously proposed protocols. CONCLUSIONS:\n                 The STK is a bioinformatics tool designed to make it easier to\n                 process source phylogenies for inclusion in supertree analysis\n                 from hundreds or thousands of input source trees, whilst\n                 reducing potential errors and enabling easy sharing of such\n                 datasets. It has been successfully used to create the largest\n                 known supertree to date containing over 5000 taxa from over\n                 700 source phylogenies.&quot;,\n  journal     = &quot;BMC research notes&quot;,\n  volume      =  3,\n  pages       = &quot;95&quot;,\n  month       =  apr,\n  year        =  2010,\n  issn        = &quot;1756-0500&quot;,\n  pmid        = &quot;20377857&quot;,\n  doi         = &quot;10.1186/1756-0500-3-95&quot;,\n  pmc         = &quot;PMC2872655&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  BACKGROUND: Large phylogenies are crucial for many areas of biological research. One method of creating such large phylogenies is the supertree method, but creating supertrees containing thousands of taxa, and hence providing a comprehensive phylogeny, requires hundred or even thousands of source input trees. Managing and processing these data in a systematic and error-free manner is challenging and will become even more so as supertrees contain ever increasing numbers of taxa. Protocols for processing input source phylogenies have been proposed to ensure data quality, but no robust software implementations of these protocols as yet exist. FINDINGS: The aim of the Supertree Tool Kit (STK) is to aid in the collection, storage and processing of input source trees for use in supertree analysis. It is therefore invaluable when creating supertrees containing thousands of taxa and hundreds of source trees. The STK is a Perl module with executable scripts to carry out various steps in the processing protocols. In order to aid processing we have added meta-data, via XML, to each tree which contains information such as the bibliographic source information for the tree and how the data were derived, for instance the character data used to carry out the original analysis. These data are essential parts of previously proposed protocols. CONCLUSIONS: The STK is a bioinformatics tool designed to make it easier to process source phylogenies for inclusion in supertree analysis from hundreds or thousands of input source trees, whilst reducing potential errors and enabling easy sharing of such datasets. It has been successfully used to create the largest known supertree to date containing over 5000 taxa from over 700 source phylogenies.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2009\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2009')\"\n      onkeypress=\"toggleGroup('group_2009')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2009</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"hill-tetzlaff-curtis-wood-modelingshallowmarinecarbonatedepositionalsystems-2009\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Modeling shallow marine carbonate depositional systems.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Tetzlaff, D.; Curtis, A.;  and Wood, R.\n</span>\n\n  \n\n</span>\n\n  <i>Computers & geosciences</i>, 35(9): 1862–1874. September 2009.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1016/j.cageo.2008.12.006\"\n     onclick=\"log_download('hill-tetzlaff-curtis-wood-modelingshallowmarinecarbonatedepositionalsystems-2009', 'http://doi.org/10.1016/j.cageo.2008.12.006', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-tetzlaff-curtis-wood-modelingshallowmarinecarbonatedepositionalsystems-2009\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-tetzlaff-curtis-wood-modelingshallowmarinecarbonatedepositionalsystems-2009')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2009-he,\n  title    = &quot;{Modeling shallow marine carbonate depositional systems}&quot;,\n  author   = &quot;Hill, Jon and Tetzlaff, Daniel and Curtis, Andrew and Wood,\n              Rachel&quot;,\n  abstract = &quot;Geological Process Models (GPMs) have been used in the past to\n              simulate the distinctive stratigraphies formed in carbonate\n              sediments, and to explore the interaction of controls that\n              produce heterogeneity. Previous GPMs have only indirectly\n              included the supersaturation of calcium carbonate in seawater, a\n              key physicochemical control on carbonate production in reef and\n              lagoon environments, by modifying production rates based on the\n              distance from open marine sources. We here use the residence time\n              of water in the lagoon and reef areas as a proxy for the\n              supersaturation state of carbonate in a new process model,\n              Carbonate GPM. Residence times in the model are calculated using\n              a particle-tracking algorithm. Carbonate production is also\n              controlled by water depth and wave power dissipation. Once\n              deposited, sediment can be eroded, transported and re-deposited\n              via both advective and diffusive processes. We show that using\n              residence time as a control on production might explain the\n              formation of non-ordered, three-dimensional carbonate\n              stratigraphies by lateral shifts in the locus of carbonate\n              deposition on timescales comparable to so-called 5th-order\n              sea-level oscillations. We also show that representing\n              supersaturation as a function of distance from open marine\n              sources, as in previous models, cannot correctly predict the\n              supersaturation distribution over a lagoon due to the intricacies\n              of the flow regime.&quot;,\n  journal  = &quot;Computers \\&amp; geosciences&quot;,\n  volume   =  35,\n  number   =  9,\n  pages    = &quot;1862--1874&quot;,\n  month    =  sep,\n  year     =  2009,\n  keywords = &quot;Carbonate&quot;,\n  issn     = &quot;0098-3004&quot;,\n  doi      = &quot;10.1016/j.cageo.2008.12.006&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Geological Process Models (GPMs) have been used in the past to simulate the distinctive stratigraphies formed in carbonate sediments, and to explore the interaction of controls that produce heterogeneity. Previous GPMs have only indirectly included the supersaturation of calcium carbonate in seawater, a key physicochemical control on carbonate production in reef and lagoon environments, by modifying production rates based on the distance from open marine sources. We here use the residence time of water in the lagoon and reef areas as a proxy for the supersaturation state of carbonate in a new process model, Carbonate GPM. Residence times in the model are calculated using a particle-tracking algorithm. Carbonate production is also controlled by water depth and wave power dissipation. Once deposited, sediment can be eroded, transported and re-deposited via both advective and diffusive processes. We show that using residence time as a control on production might explain the formation of non-ordered, three-dimensional carbonate stratigraphies by lateral shifts in the locus of carbonate deposition on timescales comparable to so-called 5th-order sea-level oscillations. We also show that representing supersaturation as a function of distance from open marine sources, as in previous models, cannot correctly predict the supersaturation distribution over a lagoon due to the intricacies of the flow regime.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2008\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2008')\"\n      onkeypress=\"toggleGroup('group_2008')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2008</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"hill-hambley-forster-mewissen-sloan-scharinger-trew-ghazal-sprintanewparallelframeworkforr-2008\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  SPRINT: a new parallel framework for R.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Hambley, M.; Forster, T.; Mewissen, M.; Sloan, T. M; Scharinger, F.; Trew, A.;  and Ghazal, P.\n</span>\n\n  \n\n</span>\n\n  <i>BMC bioinformatics</i>, 9: 558. December 2008.\n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n  <a href=\"http://doi.org/10.1186/1471-2105-9-558\"\n     onclick=\"log_download('hill-hambley-forster-mewissen-sloan-scharinger-trew-ghazal-sprintanewparallelframeworkforr-2008', 'http://doi.org/10.1186/1471-2105-9-558', event.ctrlKey)\"\n     class=\"bibbase doi link\">\n    <span>doi</span></a>\n  &nbsp;\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-hambley-forster-mewissen-sloan-scharinger-trew-ghazal-sprintanewparallelframeworkforr-2008\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-hambley-forster-mewissen-sloan-scharinger-trew-ghazal-sprintanewparallelframeworkforr-2008')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@ARTICLE{Hill2008-hg,\n  title       = &quot;{SPRINT: a new parallel framework for R}&quot;,\n  author      = &quot;Hill, Jon and Hambley, Matthew and Forster, Thorsten and\n                 Mewissen, Muriel and Sloan, Terence M and Scharinger, Florian\n                 and Trew, Arthur and Ghazal, Peter&quot;,\n  affiliation = &quot;EPCC, The University of Edinburgh, James Clerk Maxwell\n                 Building, Mayfield Road, Edinburgh EH93JZ, UK.\n                 j.hill@epcc.ed.ac.uk&quot;,\n  abstract    = &quot;BACKGROUND: Microarray analysis allows the simultaneous\n                 measurement of thousands to millions of genes or sequences\n                 across tens to thousands of different samples. The analysis of\n                 the resulting data tests the limits of existing bioinformatics\n                 computing infrastructure. A solution to this issue is to use\n                 High Performance Computing (HPC) systems, which contain many\n                 processors and more memory than desktop computer systems. Many\n                 biostatisticians use R to process the data gleaned from\n                 microarray analysis and there is even a dedicated group of\n                 packages, Bioconductor, for this purpose. However, to exploit\n                 HPC systems, R must be able to utilise the multiple processors\n                 available on these systems. There are existing modules that\n                 enable R to use multiple processors, but these are either\n                 difficult to use for the HPC novice or cannot be used to solve\n                 certain classes of problems. A method of exploiting HPC\n                 systems, using R, but without recourse to mastering parallel\n                 programming paradigms is therefore necessary to analyse\n                 genomic data to its fullest. RESULTS: We have designed and\n                 built a prototype framework that allows the addition of\n                 parallelised functions to R to enable the easy exploitation of\n                 HPC systems. The Simple Parallel R INTerface (SPRINT) is a\n                 wrapper around such parallelised functions. Their use requires\n                 very little modification to existing sequential R scripts and\n                 no expertise in parallel computing. As an example we created a\n                 function that carries out the computation of a pairwise\n                 calculated correlation matrix. This performs well with SPRINT.\n                 When executed using SPRINT on an HPC resource of eight\n                 processors this computation reduces by more than three times\n                 the time R takes to complete it on one processor. CONCLUSION:\n                 SPRINT allows the biostatistician to concentrate on the\n                 research problems rather than the computation, while still\n                 allowing exploitation of HPC systems. It is easy to use and\n                 with further development will become more useful as more\n                 functions are added to the framework.&quot;,\n  journal     = &quot;BMC bioinformatics&quot;,\n  volume      =  9,\n  pages       = &quot;558&quot;,\n  month       =  dec,\n  year        =  2008,\n  issn        = &quot;1471-2105&quot;,\n  pmid        = &quot;19114001&quot;,\n  doi         = &quot;10.1186/1471-2105-9-558&quot;,\n  pmc         = &quot;PMC2628907&quot;\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  BACKGROUND: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of the resulting data tests the limits of existing bioinformatics computing infrastructure. A solution to this issue is to use High Performance Computing (HPC) systems, which contain many processors and more memory than desktop computer systems. Many biostatisticians use R to process the data gleaned from microarray analysis and there is even a dedicated group of packages, Bioconductor, for this purpose. However, to exploit HPC systems, R must be able to utilise the multiple processors available on these systems. There are existing modules that enable R to use multiple processors, but these are either difficult to use for the HPC novice or cannot be used to solve certain classes of problems. A method of exploiting HPC systems, using R, but without recourse to mastering parallel programming paradigms is therefore necessary to analyse genomic data to its fullest. RESULTS: We have designed and built a prototype framework that allows the addition of parallelised functions to R to enable the easy exploitation of HPC systems. The Simple Parallel R INTerface (SPRINT) is a wrapper around such parallelised functions. Their use requires very little modification to existing sequential R scripts and no expertise in parallel computing. As an example we created a function that carries out the computation of a pairwise calculated correlation matrix. This performs well with SPRINT. When executed using SPRINT on an HPC resource of eight processors this computation reduces by more than three times the time R takes to complete it on one processor. CONCLUSION: SPRINT allows the biostatistician to concentrate on the research problems rather than the computation, while still allowing exploitation of HPC systems. It is easy to use and with further development will become more useful as more functions are added to the framework.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n  <div class=\"bibbase_group_whole\" id=\"group_2005\">\n    <div class=\"bibbase_group\"\n      onclick=\"toggleGroup('group_2005')\"\n      onkeypress=\"toggleGroup('group_2005')\"\n      tabindex=\"0\">\n      <i class=\"fa fa-angle-down bibbase_group_head_icon\"></i>&nbsp;\n      <span>2005</span>\n      <span class=\"bibbase_group_count\">\n        \n        (1)\n        \n      </span>\n    </div>\n    <div class=\"bibbase_group_body\">\n      \n  \n  <div class=\"bibbase_paper\" id=\"hill-curtis-wood-tetzlaff-complexityincarbonatesystems-2005\">\n  <span class=\"bibbase_paper_titleauthoryear\">\n\n  \n  <span class=\"bibbase_paper_title\">\n  \n  \n  \n  Complexity in Carbonate Systems.\n  \n  \n  \n</span>\n\n  <span class=\"bibbase_paper_author\">\n  Hill, J.; Curtis, A.; Wood, R A;  and Tetzlaff, D. M\n</span>\n\n  \n\n</span>\n\n  In Cheng, Q;  and BonhamCarter, G, editor(s), <i>GIS and Spatial Analysis, Vol 1 and 2</i>, pages 1141–1146,  2005. \n  <span class=\"note\"></span>\n\n<span class=\"bibbase_note\"></span>\n\n<br class=\"bibbase_paper_content\"/>\n\n<span class=\"bibbase_paper_content dontprint\">\n\n  \n\n  \n\n  \n  <a href=\"//bibbase.org/network/publication/hill-curtis-wood-tetzlaff-complexityincarbonatesystems-2005\"\n     class=\"bibbase bibbase_page link\">link</a>\n  &nbsp;\n  \n\n  <a href=\"#\"\n     onclick=\"showBib(event); return false;\"\n     class=\"bibbase bibtex link\">bibtex\n    <i class=\"fa fa-caret-down\"></i></a>\n\n  \n  &nbsp;\n  <a class=\"bibbase_abstract_link bibbase link\"\n     href=\"#\"\n     onclick=\"showAbstract(event); return false;\">\n    abstract <i class=\"fa fa-caret-down\"></i></a>\n  \n\n  \n\n  <!-- <a class=\"bibbase read link hidden\" -->\n  <!--    href=\"javascript:toggleRead('hill-curtis-wood-tetzlaff-complexityincarbonatesystems-2005')\" -->\n  <!--    title=\"Marking this paper as read adds it to your library on BibBase.\" -->\n  <!--    > -->\n  <!--   <i class=\"fa fa-check\"></i>&nbsp; -->\n  <!--   <span>mark as read</span> -->\n  <!-- </a> -->\n\n  &nbsp;\n  \n  \n\n</span>\n\n<div class=\"well well-small bibbase\" data-type=\"bibtex\"\n     style=\"display:none\">\n  <pre style=\"white-space: pre-wrap;\">@INPROCEEDINGS{Hill2005-fe,\n  title     = &quot;{Complexity in Carbonate Systems}&quot;,\n  booktitle = &quot;{GIS and Spatial Analysis, Vol 1 and 2}&quot;,\n  author    = &quot;Hill, Jon and Curtis, Andrew and Wood, R A and Tetzlaff, Daniel\n               M&quot;,\n  editor    = &quot;Cheng, Q and BonhamCarter, G&quot;,\n  abstract  = &quot;Carbonate sediments are often highly heterogeneous due to the\n               numerous factors that control deposition. Several of these\n               processes are non-linear, so that depositional stratigraphies\n               may consequently form complicated, perhaps even chaotic,\n               geometries. Forward modelling can help us to understand the\n               interactions between the various processes involved. Here we\n               present a new 3D forward model of carbonate production and\n               deposition, which is specifically designed to test the\n               interactions between the three main depositional controls: light\n               intensity, wave power and carbonate supersaturation, the latter\n               of which is unique to this model. The results of this analysis\n               suggest that it may be impossible to predict in detail the\n               stratigraphy of carbonate deposits due to its super-sensitivity\n               to initial conditions or controlling parameters. This reinforces\n               the conclusions reached using previous process models. However,\n               unlike previous models, our model does not explicitly include\n               nonlinear biological interactions as a control. Instead it shows\n               that similar supersensitive behaviour may originate from\n               physicochemical processes alone.&quot;,\n  pages     = &quot;1141--1146&quot;,\n  year      =  2005\n}\n\n</pre>\n</div>\n\n\n<div class=\"well well-small bibbase\" data-type=\"abstract\"\n     style=\"display:none\">\n  Carbonate sediments are often highly heterogeneous due to the numerous factors that control deposition. Several of these processes are non-linear, so that depositional stratigraphies may consequently form complicated, perhaps even chaotic, geometries. Forward modelling can help us to understand the interactions between the various processes involved. Here we present a new 3D forward model of carbonate production and deposition, which is specifically designed to test the interactions between the three main depositional controls: light intensity, wave power and carbonate supersaturation, the latter of which is unique to this model. The results of this analysis suggest that it may be impossible to predict in detail the stratigraphy of carbonate deposits due to its super-sensitivity to initial conditions or controlling parameters. This reinforces the conclusions reached using previous process models. However, unlike previous models, our model does not explicitly include nonlinear biological interactions as a control. Instead it shows that similar supersensitive behaviour may originate from physicochemical processes alone.\n</div>\n\n\n</div>\n\n\n\n\n\n    </div>\n  </div>\n\n\n\n\n  </div>\n\n\n  <!-- Modal -->\n\n  <!-- <iframe id=\"bibbase_network_frame\" -->\n  <!--         src=\"//bibbase.org/network/control\" -->\n  <!--         style=\"display: none;\"> -->\n  <!-- </iframe> -->\n\n</div>\n"}; document.write(bibbase_data.data);