BibBase kelly, c

2025 (1)

Advancing genetic engineering in the plant growth-promoting agricultural bacterium Azospirillum brasilense. Riley, E.; Poma, M.; and Kelly, C. L bioRxiv,2025–04. 2025.
link bibtex

@article{riley2025advancing,
  title={Advancing genetic engineering in the plant growth-promoting agricultural bacterium Azospirillum brasilense},
  author={Riley, Emma and Poma, Melissa and Kelly, Ciar{\'a}n L},
  journal={bioRxiv},
  pages={2025--04},
  year={2025},
  publisher={Cold Spring Harbor Laboratory}
}

2020 (2)

In situ characterisation and manipulation of biological systems with Chi. Bio. Steel, H.; Habgood, R.; Kelly, C. L; and Papachristodoulou, A. PLoS Biology, 18(7): e3000794. 2020.
link bibtex

@article{steel2020situ,
  title={In situ characterisation and manipulation of biological systems with Chi. Bio},
  author={Steel, Harrison and Habgood, Robert and Kelly, Ciar{\'a}n L and Papachristodoulou, Antonis},
  journal={PLoS Biology},
  volume={18},
  number={7},
  pages={e3000794},
  year={2020},
  publisher={Public Library of Science}
}

Hanessian-Hullar reaction in the synthesis of highly substituted trans-3, 4-dihydroxypyrrolidines: Rhamnulose iminosugar mimics inhibit $α$-glucosidase. Liu, Z.; Yoshihara, A.; Jenkinson, S. F; Wormald, M. R; Kelly, C.; Heap, J. T; Marqvorsen, M. H.; Estévez, R. J; Fleet, G. W.; Nakagawa, S.; and others Tetrahedron, 76(1): 130758. 2020.
link bibtex

@article{liu2020hanessian,
  title={Hanessian-Hullar reaction in the synthesis of highly substituted trans-3, 4-dihydroxypyrrolidines: Rhamnulose iminosugar mimics inhibit $\alpha$-glucosidase},
  author={Liu, Zilei and Yoshihara, Akihide and Jenkinson, Sarah F and Wormald, Mark R and Kelly, Ciar{\'a}n and Heap, John T and Marqvorsen, Mikkel HS and Est{\'e}vez, Ram{\'o}n J and Fleet, George WJ and Nakagawa, Shinpei and others},
  journal={Tetrahedron},
  volume={76},
  number={1},
  pages={130758},
  year={2020},
  publisher={Elsevier}
}

2019 (2)

Transcriptional terminators allow leak-free chromosomal integration of genetic constructs in cyanobacteria. Kelly, C. L; Taylor, G. M; Šatkutė, A.; Dekker, L.; and Heap, J. T Microorganisms, 7(8): 263. 2019.
link bibtex

@article{kelly2019transcriptional,
  title={Transcriptional terminators allow leak-free chromosomal integration of genetic constructs in cyanobacteria},
  author={Kelly, Ciar{\'a}n L and Taylor, George M and {\v{S}}atkut{\.e}, Aist{\.e} and Dekker, Linda and Heap, John T},
  journal={Microorganisms},
  volume={7},
  number={8},
  pages={263},
  year={2019},
  publisher={Multidisciplinary Digital Publishing Institute}
}

Chi. Bio: An open-source automated experimental platform for biological science research. Steel, H.; Habgood, R.; Kelly, C.; and Papachristodoulou, A. BioRxiv,796516. 2019.
link bibtex

@article{steel2019chi,
  title={Chi. Bio: An open-source automated experimental platform for biological science research},
  author={Steel, Harrison and Habgood, Robert and Kelly, Ciar{\'a}n and Papachristodoulou, Antonis},
  journal={BioRxiv},
  pages={796516},
  year={2019},
  publisher={Cold Spring Harbor Laboratory}
}

2018 (3)

Review of NAD (P) H-dependent oxidoreductases: Properties, engineering and application. Vidal, L. S.; Kelly, C. L; Mordaka, P. M; and Heap, J. T Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1866(2): 327–347. 2018.
link bibtex

@article{vidal2018review,
  title={Review of NAD (P) H-dependent oxidoreductases: Properties, engineering and application},
  author={Vidal, Lara Sell{\'e}s and Kelly, Ciar{\'a}n L and Mordaka, Pawe{\l} M and Heap, John T},
  journal={Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics},
  volume={1866},
  number={2},
  pages={327--347},
  year={2018},
  publisher={Elsevier}
}

Synthetic negative feedback circuits using engineered small RNAs. Kelly, C. L; Harris, A. W K; Steel, H.; Hancock, E. J; Heap, J. T; and Papachristodoulou, A. Nucleic acids research, 46(18): 9875–9889. 2018.
link bibtex

@article{kelly2018synthetic,
  title={Synthetic negative feedback circuits using engineered small RNAs},
  author={Kelly, Ciar{\'a}n L and Harris, Andreas W K and Steel, Harrison and Hancock, Edward J and Heap, John T and Papachristodoulou, Antonis},
  journal={Nucleic acids research},
  volume={46},
  number={18},
  pages={9875--9889},
  year={2018},
  publisher={Oxford University Press}
}

A rhamnose-inducible system for precise and temporal control of gene expression in cyanobacteria. Kelly, C. L; Taylor, G. M; Hitchcock, A.; Torres-Méndez, A.; and Heap, J. T ACS synthetic biology, 7(4): 1056–1066. 2018.
link bibtex

@article{kelly2018rhamnose,
  title={A rhamnose-inducible system for precise and temporal control of gene expression in cyanobacteria},
  author={Kelly, Ciar{\'a}n L and Taylor, George M and Hitchcock, Andrew and Torres-M{\'e}ndez, Antonio and Heap, John T},
  journal={ACS synthetic biology},
  volume={7},
  number={4},
  pages={1056--1066},
  year={2018},
  publisher={American Chemical Society}
}

2017 (4)

Expanding the substrates for a bacterial hydrogenlyase reaction. Lamont, C. M; Kelly, C. L; Pinske, C.; Buchanan, G.; Palmer, T.; and Sargent, F. Microbiology, 163(5): 649. 2017.
link bibtex

@article{lamont2017expanding,
  title={Expanding the substrates for a bacterial hydrogenlyase reaction},
  author={Lamont, Ciaran M and Kelly, Ciar{\'a}n L and Pinske, Constanze and Buchanan, Grant and Palmer, Tracy and Sargent, Frank},
  journal={Microbiology},
  volume={163},
  number={5},
  pages={649},
  year={2017},
  publisher={Microbiology Society}
}

The autorepressor: A case study of the importance of model selection. Harris, A. W.; Kelly, C. L; Steel, H.; and Papachristodoulou, A. In 2017 IEEE 56th Annual Conference on Decision and Control (CDC), pages 1622–1627, 2017. IEEE
link bibtex

@inproceedings{harris2017autorepressor,
  title={The autorepressor: A case study of the importance of model selection},
  author={Harris, Andreas WK and Kelly, Ciar{\'a}n L and Steel, Harrison and Papachristodoulou, Antonis},
  booktitle={2017 IEEE 56th Annual Conference on Decision and Control (CDC)},
  pages={1622--1627},
  year={2017},
  organization={IEEE}
}

Frequency domain analysis of small non-coding RNAs shows summing junction-like behaviour. Steel, H.; Harris, A. W.; Hancock, E. J; Kelly, C. L; and Papachristodoulou, A. In 2017 IEEE 56th Annual Conference on Decision and Control (CDC), pages 5328–5333, 2017. IEEE
link bibtex

@inproceedings{steel2017frequency,
  title={Frequency domain analysis of small non-coding RNAs shows summing junction-like behaviour},
  author={Steel, Harrison and Harris, Andreas WK and Hancock, Edward J and Kelly, Ciar{\'a}n L and Papachristodoulou, Antonis},
  booktitle={2017 IEEE 56th Annual Conference on Decision and Control (CDC)},
  pages={5328--5333},
  year={2017},
  organization={IEEE}
}

Frequency domain analysis of small non-coding RNAs shows summing junction-like behaviour. Hancock, E.; Harris, A. W.; Kelly, C. L; Papachristodoulou, A.; and Steel, H. . 2017.
link bibtex

@article{hancock2017frequency,
  title={Frequency domain analysis of small non-coding RNAs shows summing junction-like behaviour},
  author={Hancock, Edward and Harris, Andreas WK and Kelly, Ciaran L and Papachristodoulou, Antonis and Steel, Harrison},
  year={2017},
  publisher={Institute of Electrical and Electronics Engineers (IEEE)}
}

2016 (2)

Synthetic chemical inducers and genetic decoupling enable orthogonal control of the rhaBAD promoter. Kelly, C. L; Liu, Z.; Yoshihara, A.; Jenkinson, S. F; Wormald, M. R; Otero, J. M; Estévez, A. M; Kato, A.; Marqvorsen, M. H.; Fleet, G. W.; and others ACS synthetic biology. 2016.
link bibtex

@article{kelly2016synthetic,
  title={Synthetic chemical inducers and genetic decoupling enable orthogonal control of the rhaBAD promoter},
  author={Kelly, Ciar{\'a}n L and Liu, Zilei and Yoshihara, Akihide and Jenkinson, Sarah F and Wormald, Mark R and Otero, Jose M and Est{\'e}vez, Amalia M and Kato, Atsushi and Marqvorsen, Mikkel HS and Fleet, George WJ and others},
  journal={ACS synthetic biology},
  year={2016},
  publisher={ACS Publications}
}

6-Deoxyhexoses from l-Rhamnose in the Search for Inducers of the Rhamnose Operon: Synergy of Chemistry and Biotechnology. Liu, Z.; Yoshihara, A.; Kelly, C.; Heap, J. T; Marqvorsen, M. H.; Jenkinson, S. F; Wormald, M. R; Otero, J. M; Estévez, A.; Kato, A.; and others Chemistry-A European Journal, 22(35): 12557–12565. 2016.
link bibtex

@article{liu20166,
  title={6-Deoxyhexoses from l-Rhamnose in the Search for Inducers of the Rhamnose Operon: Synergy of Chemistry and Biotechnology},
  author={Liu, Zilei and Yoshihara, Akihide and Kelly, Ciar{\'a}n and Heap, John T and Marqvorsen, Mikkel HS and Jenkinson, Sarah F and Wormald, Mark R and Otero, Jos{\'e} M and Est{\'e}vez, Amalia and Kato, Atsushi and others},
  journal={Chemistry-A European Journal},
  volume={22},
  number={35},
  pages={12557--12565},
  year={2016},
  publisher={Wiley Online Library}
}

2015 (4)

Physiology and bioenergetics of [NiFe]-hydrogenase 2-catalyzed H2-consuming and H2-producing reactions in Escherichia coli. Pinske, C.; Jaroschinsky, M.; Linek, S.; Kelly, C. L; Sargent, F.; and Sawers, R G. Journal of bacteriology, 197(2): 296–306. 2015.
link bibtex

@article{pinske2015physiology,
  title={Physiology and bioenergetics of [NiFe]-hydrogenase 2-catalyzed H2-consuming and H2-producing reactions in Escherichia coli},
  author={Pinske, Constanze and Jaroschinsky, Monique and Linek, Sabine and Kelly, Ciar{\'a}n L and Sargent, Frank and Sawers, R Gary},
  journal={Journal of bacteriology},
  volume={197},
  number={2},
  pages={296--306},
  year={2015},
  publisher={Am Soc Microbiol}
}

Designing genetic feedback controllers. Harris, A. W.; Dolan, J. A; Kelly, C. L; Anderson, J.; and Papachristodoulou, A. IEEE transactions on biomedical circuits and systems, 9(4): 475–484. 2015.
link bibtex

@article{harris2015designing,
  title={Designing genetic feedback controllers},
  author={Harris, Andreas WK and Dolan, James A and Kelly, Ciar{\'a}n L and Anderson, James and Papachristodoulou, Antonis},
  journal={IEEE transactions on biomedical circuits and systems},
  volume={9},
  number={4},
  pages={475--484},
  year={2015},
  publisher={IEEE}
}

Integration of an [FeFe]-hydrogenase into the anaerobic metabolism of Escherichia coli. Kelly, C. L; Pinske, C.; Murphy, B. J; Parkin, A.; Armstrong, F.; Palmer, T.; and Sargent, F. Biotechnology Reports, 8: 94–104. 2015.
link bibtex

@article{kelly2015integration,
  title={Integration of an [FeFe]-hydrogenase into the anaerobic metabolism of Escherichia coli},
  author={Kelly, Ciar{\'a}n L and Pinske, Constanze and Murphy, Bonnie J and Parkin, Alison and Armstrong, Fraser and Palmer, Tracy and Sargent, Frank},
  journal={Biotechnology Reports},
  volume={8},
  pages={94--104},
  year={2015},
  publisher={Elsevier}
}

Supplementary Information for Designing Genetic Feedback Controllers. Harris, A. W.; Dolan, J. A; Kelly, C. L; Anderson, J.; and Papachristodoulou, A. . 2015.
link bibtex

@article{harris2015supplementary,
  title={Supplementary Information for Designing Genetic Feedback Controllers},
  author={Harris, Andreas WK and Dolan, James A and Kelly, Ciar{\'a}n L and Anderson, James and Papachristodoulou, Antonis},
  year={2015}
}

2013 (2)

A synthetic system for expression of components of a bacterial microcompartment. Sargent, F.; Davidson, F. A; Kelly, C. L; Binny, R.; Christodoulides, N.; Gibson, D.; Johansson, E.; Kozyrska, K.; Lado, L. L.; MacCallum, J.; and others Microbiology, 159(Pt 11): 2427. 2013.
link bibtex

@article{sargent2013synthetic,
  title={A synthetic system for expression of components of a bacterial microcompartment},
  author={Sargent, Frank and Davidson, Fordyce A and Kelly, Ciaran L and Binny, Rachelle and Christodoulides, Natasha and Gibson, David and Johansson, Emelie and Kozyrska, Katarzyna and Lado, Lucia Licandro and MacCallum, Jane and others},
  journal={Microbiology},
  volume={159},
  number={Pt 11},
  pages={2427},
  year={2013},
  publisher={Microbiology Society}
}

Biohydrogen Production in Escherichia Coli: A Synthetic Biology Approach. Kelly, C. L Ph.D. Thesis, University of Dundee, 2013.
link bibtex

@phdthesis{kelly2013biohydrogen,
  title={Biohydrogen Production in Escherichia Coli: A Synthetic Biology Approach},
  author={Kelly, Ciaran L},
  year={2013},
  school={University of Dundee}
}

2008 (2)

The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. James, A. B; Monreal, J. A; Nimmo, G. A; Kelly, C. L; Herzyk, P.; Jenkins, G. I; and Nimmo, H. G Science, 322(5909): 1832–1835. 2008.
link bibtex

@article{james2008circadian,
  title={The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots},
  author={James, Allan B and Monreal, Jos{\'e} A and Nimmo, Gillian A and Kelly, Ciar{\'a}n L and Herzyk, Pawel and Jenkins, Gareth I and Nimmo, Hugh G},
  journal={Science},
  volume={322},
  number={5909},
  pages={1832--1835},
  year={2008},
  publisher={American Association for the Advancement of Science}
}

Organ specificity and communication in the Arabidopsis circadian clock. Nimmo, H. G; James, A.; Monreal, J.; Nimmo, G. A; Kelly, C. L; Herzyk, P.; and Jenkins, G. I Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 150(3): S152. 2008.
link bibtex

@article{nimmo2008organ,
  title={Organ specificity and communication in the Arabidopsis circadian clock},
  author={Nimmo, Hugh G and James, Allan and Monreal, Jos{\'e} and Nimmo, Gillian A and Kelly, Ciar{\'a}n L and Herzyk, Pawel and Jenkins, Gareth I},
  journal={Comparative Biochemistry and Physiology Part A: Molecular \& Integrative Physiology},
  volume={150},
  number={3},
  pages={S152},
  year={2008},
  publisher={Pergamon}
}

undefined (1)

Biohydrogen-a clean fuel but a dirty business. SARGENT, F.; and KELLY, C. L . .
link bibtex

@article{sargentbiohydrogen,
  title={Biohydrogen-a clean fuel but a dirty business},
  author={SARGENT, FRANK and KELLY, CIAR{\'A}N L}
}