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  2021 (5)
Distinct patterns of blood cytokines beyond a cytokine storm predict mortality in COVID-19. Herr, C.; Mang, S.; Mozafari, B.; Günther, K.; Speer, T.; Seibert, M.; Srikakulam, S. K.; Beisswenger, C.; Ritzmann, F.; Keller, A.; Müller, R.; Smola, S.; Eisinger, D.; Zemlin, M.; Danziger, G.; Volk, T.; Hörsch, S.; Krawczyk, M.; Lammert, F.; Adams, T.; Wagenpfeil, G.; Kindermann, M.; Marcu, C.; Ataya, Z. W. D.; Mittag, M.; Schwarzkopf, K.; Custodis, F.; Grandt, D.; Schäfer, H.; Eltges, K.; Lepper, P. M.; Bals, R.; and study group , C. medRxiv. 2021.
Distinct patterns of blood cytokines beyond a cytokine storm predict mortality in COVID-19 [link]Paper   doi   link   bibtex   abstract  
A human brain vascular atlas reveals diverse cell mediators of Alzheimer's disease risk. Yang, A. C.; Vest, R. T.; Kern, F.; Lee, D. P.; Maat, C. A.; Losada, P. M.; Chen, M. B.; Agam, M.; Schaum, N.; Khoury, N.; Calcuttawala, K.; Pálovics, R.; Shin, A.; Wang, E. Y.; Luo, J.; Gate, D.; Siegenthaler, J. A.; McNerney, M. W.; Keller, A.; and Wyss-Coray, T. bioRxiv. 2021.
A human brain vascular atlas reveals diverse cell mediators of Alzheimer's disease risk [link]Paper   doi   link   bibtex   abstract  
Vesicle-bound regulatory RNAs are associated with tissue aging. Kern, F.; Kuhn, T.; Ludwig, N.; Simon, M.; Gröger, L.; Fabis, N.; Salhab, A.; Fehlmann, T.; Hahn, O.; Engel, A.; Koch, M.; Koehler, J.; Winek, K.; Soreq, H.; Fuhrmann, G.; Wyss-Coray, T.; Meese, E.; Laschke, M. W.; and Keller, A. bioRxiv. 2021.
Vesicle-bound regulatory RNAs are associated with tissue aging [link]Paper   doi   link   bibtex   abstract  
Xenogeneic Skin Transplantation Promotes Angiogenesis and Tissue Regeneration Through Vitamin D-Activated Trem2+ Macrophages. Henn, D.; Chen, K.; Fehlmann, T.; Sivaraj, D.; Maan, Z.; Bonham, C.; Barrera, J.; Mays, C.; Greco, A.; Illouz, S.; Lin, J.; Foster, D.; Padmanabhan, J.; Momeni, A.; Nguyen, D.; Wan, D.; Kneser, U.; Januszyk, M.; Keller, A.; and Gurtner, G. . 02 2021.
Xenogeneic Skin Transplantation Promotes Angiogenesis and Tissue Regeneration Through Vitamin D-Activated Trem2+ Macrophages [link]Paper   doi   link   bibtex   abstract  
Effects of Resistant Starch on Symptoms, Fecal Markers and Gut Microbiota in Parkinson′s Disease — The RESISTA-PD Trial. Becker, A.; Schmartz, G.; Gröger, L.; Grammes, N.; Galata, V.; Philippeit, H.; Weiland, J.; Ludwig, N.; Meese, E.; Tierling, S.; Walter, J.; Schwiertz, A.; Spiegel, J.; Wagenpfeil, G.; Fassbender, K.; Keller, A.; and Unger, M. . 02 2021.
Effects of Resistant Starch on Symptoms, Fecal Markers and Gut Microbiota in Parkinson′s Disease — The RESISTA-PD Trial [link]Paper   doi   link   bibtex   abstract  
  2020 (7)
Molecular hallmarks of heterochronic parabiosis at single cell resolution. Palovics, R.; Keller, A.; Schaum, N.; Tan, W.; Fehlmann, T.; Borja, M.; Webber, J.; McGeever, A.; Bonanno, L.; , undefined; Pisco, A. O.; Karkanias, J.; Neff, N. F.; Darmanis, S.; Quake, S. R.; and Wyss-Coray, T. bioRxiv. 2020.
Molecular hallmarks of heterochronic parabiosis at single cell resolution [link]Paper   doi   link   bibtex   abstract  
Broad transcriptional dysregulation of brain and choroid plexus cell types with COVID-19. Yang, A. C.; Kern, F.; Losada, P. M; Maat, C. A; Schmartz, G.; Fehlmann, T.; Schaum, N.; Lee, D. P; Calcuttawala, K.; Vest, R. T; Gate, D.; Berdnik, D.; McNerney, M. W.; Channappa, D.; Cobos, I.; Ludwig, N.; Schulz-Schaeffer, W. J.; Keller, A.; and Wyss-Coray, T. bioRxiv. 2020.
Broad transcriptional dysregulation of brain and choroid plexus cell types with COVID-19 [link]Paper   doi   link   bibtex   abstract  
Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis. Keller, A.; Fehlmann, T.; Backes, C.; Kern, F.; Gislefoss, R.; Langseth, H.; Rounge, T. B.; Ludwig, N.; and Meese, E. bioRxiv. 2020.
Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis [link]Paper   doi   link   bibtex   abstract  
miEAA 2.0: Integrating multi-species microRNA enrichment analysis and workflow management systems. Kern, F.; Fehlmann, T.; Solomon, J.; Schwed, L.; Backes, C.; Meese, E.; and Keller, A. bioRxiv. 2020.
miEAA 2.0: Integrating multi-species microRNA enrichment analysis and workflow management systems [link]Paper   doi   link   bibtex   abstract  
A mouse tissue atlas of small non-coding RNA. Isakova, A.; Fehlmann, T.; Keller, A.; and Quake, S. R. bioRxiv. 2020.
A mouse tissue atlas of small non-coding RNA [link]Paper   doi   link   bibtex   abstract  
Deep sncRNA-seq of the PPMI cohort to study Parkinsons disease progression. Kern, F.; Fehlmann, T.; Violich, I.; Alsop, E.; Hutchins, E.; Kahraman, M.; Grammes, N. L.; Guimaraes, P.; Backes, C.; Poston, K.; Casey, B.; Balling, R.; Geffers, L.; Krueger, R.; Galasko, D.; Mollenhauer, B.; Meese, E.; Wyss-Coray, T.; Craig, D. W.; Van Keuren-Jensen, K.; and Keller, A. bioRxiv. 2020.
Deep sncRNA-seq of the PPMI cohort to study Parkinsons disease progression [link]Paper   doi   link   bibtex   abstract  
miRSwitch: Detecting microRNA arm shift and switch events. Kern, F. M.; Amand, J.; Senatorov, I.; Isakova, A.; Backes, C.; Meese, E.; Keller, A.; and Fehlmann, T. bioRxiv. 2020.
miRSwitch: Detecting microRNA arm shift and switch events [link]Paper   doi   link   bibtex   abstract  
  2019 (5)
Differential degradation of RNA species by autophagy related pathways in plants. Hickl, D.; Drews, F.; Girke, C.; Zimmer, D.; Mühlhaus, T.; Hauth, J.; Nordström, K.; Trentmann, O.; Neuhaus, H.; Fehlmann, T.; Keller, A.; Simon, M.; and Möhlmann, T. bioRxiv. 2019.
Differential degradation of RNA species by autophagy related pathways in plants [link]Paper   doi   link   bibtex   abstract  
Undulating changes in human plasma proteome across lifespan are linked to disease. Lehallier, B.; Gate, D.; Schaum, N.; Nanasi, T.; Lee, S. E.; Yousef, H.; Losada, P. M.; Berdnik, D.; Keller, A.; Verghese, J.; Sathyan, S.; Franceschi, C.; Milman, S.; Barzilai, N.; and Wyss-Coray, T. bioRxiv. 2019.
Undulating changes in human plasma proteome across lifespan are linked to disease [link]Paper   doi   link   bibtex   abstract  
Systematic assessment of blood-borne microRNAs highlights molecular profiles of endurance sport and carbohydrate uptake. Kern, F.; Ludwig, N.; Backes, C.; Maldener, E.; Fehlmann, T.; Suleymanov, A.; Meese, E.; Hecksteden, A.; Keller, A.; and Meyer, T. bioRxiv. 2019.
Systematic assessment of blood-borne microRNAs highlights molecular profiles of endurance sport and carbohydrate uptake [link]Paper   doi   link   bibtex   abstract  
The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude. Schaum, N.; Lehallier, B.; Hahn, O.; Hosseinzadeh, S.; Lee, S. E.; Sit, R.; Lee, D. P.; Losada, P. M.; Zardeneta, M. E.; Pálovics, R.; Fehlmann, T.; Webber, J.; McGeever, A.; Zhang, H.; Berdnik, D.; Tan, W.; Zee, A.; Tan, M.; , undefined; Pisco, A.; Karkanias, J.; Neff, N. F.; Keller, A.; Darmanis, S.; Quake, S. R.; and Wyss-Coray, T. bioRxiv. 2019.
The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude [link]Paper   doi   link   bibtex   abstract  
Machine learning to detect Alzheimer\textquoterights disease from circulating non-coding RNAs. Ludwig, N.; Fehlmann, T.; Gogol, M.; Maetzler, W.; Deutscher, S.; Gurlit, S.; Schulte, C.; von Thaler, A.; Deuschle, C.; Metzger, F.; Berg, D.; Suenkel, U.; Keller, V.; Backes, C.; Lenhof, H.; Meese, E.; and Keller, A. bioRxiv. 2019.
Machine learning to detect Alzheimer\textquoterights disease from circulating non-coding RNAs [link]Paper   doi   link   bibtex   abstract  
  2018 (2)
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates. Galata, V.; Laczny, C. C.; Backes, C.; Hemmrich-Stanisak, G.; Schmolke, S.; Franke, A.; Meese, E.; Herrmann, M.; Müller, L. v.; Plum, A.; Müller, R.; Stähler, C.; Posch, A. E.; and Keller, A. bioRxiv. 2018.
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates [link]Paper   doi   link   bibtex   abstract  
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Rounge, T. B; Umu, S. U; Keller, A.; Meese, E.; Ursin, G.; Tretli, S.; Lyle, R.; and Langseth, H. bioRxiv. 2018.
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity [link]Paper   doi   link   bibtex   abstract  
  2017 (1)
A comprehensive profile of circulating RNAs in human serum. Umu, S. U.; Langseth, H.; Bucher-Jonannessen, C.; Fromm, B.; Keller, A.; Meese, E.; Lauritzen, M.; Leithaug, M.; Lyle, R.; and Rounge, T. bioRxiv. 2017.
A comprehensive profile of circulating RNAs in human serum [link]Paper   doi   link   bibtex   abstract