2018 (6)
Automating ontology engineering support activities with OnToology. Alobaid, A.; Garijo, D.; María Poveda-Villalón; Santana-Pérez, I.; Fernández-Izquierdo, A.; and Corcho, O. Journal of Web Semantics. 2018.
Automating ontology engineering support activities with OnToology [pdf]Paper   doi   bibtex
Semantic Software Metadata for Workflow Exploration and Evolution. Carvalho, L.; Garijo, D.; Medeiros, C. B.; and Gil, Y. In Proceedings of the Fourteenth IEEE International Conference on eScience, Amsterdam, The Netherlands, 2018.
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Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution. da Silva, R. F.; Garijo, D.; Peckham, S. D.; Gil, Y.; Deelman, E.; and Ratnakar, V. In Proceedings of the Ninth International Congress on Environmental Modeling and Software, Ft Collins, CO, 2018.
Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution [pdf]Paper   bibtex
MINT: Model Integration Through Knowledge-Powered Data and Process Composition. Gil, Y.; Cobourn, K.; Deelman, E.; Duffy, C.; da Silva, R. F.; Kemanian, A.; Knoblock, C.; Kumar, V.; Peckham, S.; Carvalho, L.; Chiang, Y.; Garijo, D.; Khider, D.; Khandelwal, A.; Pahm, M.; Pujara, J.; Ratnakar, V.; Stoica, M.; and Vu, B. In Proceedings of the 9th International Congress on Environmental Modelling and Software, 2018.
MINT: Model Integration Through Knowledge-Powered Data and Process Composition [pdf]Paper   bibtex
A Semantic Model Catalog to Support Comparison and Reuse. Garijo, D.; Khider, D.; Gil, Y.; Carvalho, L.; Essawy, B.; Pierce, S.; Lewis, D. H.; Ratnakar, V.; Peckham, S.; Duffy, C.; and Goodal, J. In Proceedings of the 9th International Congress on Environmental Modelling and Software, 2018.
A Semantic Model Catalog to Support Comparison and Reuse [pdf]Paper   bibtex
P4ML: A Phased Performance-Based Pipeline Planner for Automated Machine Learning. Gil, Y.; Yao, K.; Ratnakar, V.; Garijo, D.; Steeg, G. V.; Szekely, P.; Brekelmans, R.; Kejriwal, M.; Luo, F.; and Huang, I. In Proceedings of Machine Learning Research, ICML 2018 AutoML Workshop, 2018.
P4ML: A Phased Performance-Based Pipeline Planner for Automated Machine Learning [pdf]Paper   bibtex
  2017 (12)
The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery . Garijo, D.; Gil, Y.; and Ratnakar, V. In Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP), Austin, Texas, 2017.
The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery  [link]Paper   bibtex
NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance . Carvalho, L. A. M. C.; Wang, R.; Gil, Y.; and Garijo, D. In Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP), Austin, Texas, 2017.
NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance  [link]Paper   bibtex
Requirements for Supporting the Iterative Exploration of Scientific Workflow Variants . Carvalho, L. A. M. C.; Essawy, B. T.; Garijo, D.; Medeiros, C. B.; and Gil, Y. In Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP), Austin, Texas, 2017.
Requirements for Supporting the Iterative Exploration of Scientific Workflow Variants  [link]Paper   bibtex
Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions . Gil, Y.; Garijo, D.; Knoblock, M.; Deng, A.; Adusumilli, R.; Ratnakar, V.; and Mallick, P. In Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP), Austin, Texas, 2017.
Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions  [link]Paper   bibtex
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. Jang, M.; Patted, T.; Gil, Y.; Garijo, D.; Ratnakar, V.; Ji, J.; Wang, P.; McMahon, A.; Thompson, P. M.; and Jahanshad, N. In Proceedings of the Workshop on Enabling Open Semantic Science, co-located with the Sixteenth International Semantic Web Conference (ISWC), Vienna, Austria, 2017.
Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata [link]Paper   Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata [pdf]Link   bibtex
Towards Continuous Scientific Data Analysis and Hypothesis Evolution. Gil, Y.; Garijo, D.; Ratnakar, V.; Mayani, R.; Adusumilli, R.; Boyce, H.; Srivastava, A.; and Mallick, P. In Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence, pages 4406–4414, 2017.
Towards Continuous Scientific Data Analysis and Hypothesis Evolution. [pdf]Paper   doi   bibtex
Abstract, link, publish, exploit: An end to end framework for workflow sharing. Garijo, D.; Gil, Y.; and Corcho, O. Future Generation Computer Systems. 2017.
Abstract, link, publish, exploit: An end to end framework for workflow sharing [pdf]Paper   doi   bibtex
Towards Automating Data Narratives. Gil, Y.; and Garijo, D. In Proceedings of the 22nd International Conference on Intelligent User Interfaces, pages 565–576, 2017. ACM
Towards Automating Data Narratives [pdf]Paper   doi   bibtex
AI buzzwords explained: scientific workflows. Garijo, D. AI Matters, 3(1): 4–8. 2017.
AI buzzwords explained: scientific workflows [pdf]Paper   doi   bibtex
Engineering Academic Software (Dagstuhl Perspectives Workshop 16252). Allen, A.; Aragon, C.; Becker, C.; Carver, J.; Chis, A.; Combemale, B.; Croucher, M.; Crowston, K.; Garijo, D.; Gehani, A.; Goble, C.; Haines, R.; Hirschfeld, R.; Howison, J.; Huff, K.; Jay, C.; Katz, D. S.; Kirchner, C.; Kuksenok, K.; Lämmel, R.; Nierstrasz, O.; Turk, M.; van Nieuwpoort, R.; Vaughn, M.; and Vinju, J. J. Dagstuhl Manifestos, 6(1): 1–20. 2017.
Engineering Academic Software (Dagstuhl Perspectives Workshop 16252) [link]Paper   doi   bibtex
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. Gil, Y.; Garijo, D.; Ratnakar, V.; Khider, D.; Emile-Geay, J.; and McKay, N. In International Semantic Web Conference, pages 231–246, 2017. Springer, Cham
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations [pdf]Paper   doi   bibtex
WIDOCO: a wizard for documenting ontologies. Garijo, D. In International Semantic Web Conference, pages 94–102, 2017. Springer, Cham
WIDOCO: a wizard for documenting ontologies [pdf]Paper   doi   bibtex
  2016 (4)
An ontology for videogame interoperability. Parkkila, J.; Radulovic, F.; Garijo, D.; Poveda-Villalón, M.; Ikonen, J.; Porras, J.; and Gómez-Pérez, A. Multimedia Tools and Applications, 76(4): 4981–5000. 2016.
An ontology for videogame interoperability [pdf]Paper   doi   bibtex
Automated Hypothesis Testing with Large Scientific Data Repositories. Gil, Y.; Garijo, D.; Ratnakar, V.; Mayani, R.; Adusumilli, R.; Boyce, H.; and Mallick, P. In Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS), 2016.
Automated Hypothesis Testing with Large Scientific Data Repositories [pdf]Paper   bibtex
OntoSoft: A distributed semantic registry for scientific software. Gil, Y.; Garijo, D.; Mishra, S.; and Ratnakar, V. In e-Science (e-Science), 2016 IEEE 12th International Conference on, pages 331–336, 2016. IEEE
OntoSoft: A distributed semantic registry for scientific software [pdf]Paper   doi   bibtex
Lightning Talk:" I solemnly pledge": A Manifesto for Personal Responsibility in the Engineering of Academic Software. Allen, A.; Aragon, C.; Becker, C.; Carver, J.; Chis, V.; Combemale, B.; Croucher, M.; Crowston, K.; Garijo, D.; Gehani, A.; and others . 2016.
Lightning Talk:" I solemnly pledge": A Manifesto for Personal Responsibility in the Engineering of Academic Software [pdf]Paper   bibtex
  2015 (5)
Using a suite of ontologies for preserving workflow-centric research objects. Belhajjame, K.; Zhao, J.; Garijo, D.; Gamble, M.; Hettne, K.; Palma, R.; Mina, E.; Corcho, O.; Gómez-Pérez, J. M.; Bechhofer, S.; and others Web Semantics: Science, Services and Agents on the World Wide Web, 32: 16–42. 2015.
Using a suite of ontologies for preserving workflow-centric research objects [pdf]Paper   doi   bibtex
LDP4ROs: Managing Research Objects with the W3C Linked Data Platform. Garijo, D.; Mihindukulasooriya, N.; and Corcho, O. In Proceedings of the 24th International Conference on World Wide Web, pages 1057–1058, 2015. ACM
LDP4ROs: Managing Research Objects with the W3C Linked Data Platform [pdf]Paper   doi   bibtex
OntoSoft: Capturing scientific software metadata. Gil, Y.; Ratnakar, V.; and Garijo, D. In Proceedings of the 8th International Conference on Knowledge Capture, pages 32, 2015. ACM
OntoSoft: Capturing scientific software metadata [pdf]Paper   doi   bibtex
OnToology, a tool for collaborative development of ontologies. Alobaid, A.; Garijo, D.; Poveda-Villalón, M.; Pérez, I. S.; and Corcho, O. In ICBO, 2015.
OnToology, a tool for collaborative development of ontologies. [pdf]Paper   bibtex
Mining Abstractions in Scientific Workows. Garijo Verdejo, D. Ph.D. Thesis, ETSI_Informatica, 2015.
Mining Abstractions in Scientific Workows [pdf]Paper   bibtex
  2014 (6)
Common motifs in scientific workflows: An empirical analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. Future Generation Computer Systems, 36: 338–351. 2014.
Common motifs in scientific workflows: An empirical analysis [pdf]Paper   doi   bibtex
The Research Object suite of ontologies: Sharing and exchanging research data and methods on the open web. Belhajjame, K.; Zhao, J.; Garijo, D.; Hettne, K.; Palma, R.; Corcho, Ó.; Gómez-Pérez, J.; Bechhofer, S.; Klyne, G.; and Goble, C. arXiv preprint arXiv:1401.4307. 2014.
The Research Object suite of ontologies: Sharing and exchanging research data and methods on the open web [link]Paper   bibtex
Workflow reuse in practice: a study of neuroimaging pipeline users. Garijo, D.; Corcho, O.; Gil, Y.; Braskie, M. N; Hibar, D.; Hua, X.; Jahanshad, N.; Thompson, P.; and Toga, A. W In e-Science (e-Science), 2014 IEEE 10th International Conference on, volume 1, pages 239–246, 2014. IEEE
Workflow reuse in practice: a study of neuroimaging pipeline users [pdf]Paper   doi   bibtex
Fragflow automated fragment detection in scientific workflows. Garijo, D.; Corcho, O.; Gil, Y.; Gutman, B. A; Dinov, I. D; Thompson, P.; and Toga, A. W In e-Science (e-Science), 2014 IEEE 10th International Conference on, volume 1, pages 281–289, 2014. IEEE
Fragflow automated fragment detection in scientific workflows [pdf]Paper   doi   bibtex   13 downloads
Towards workflow ecosystems through semantic and standard representations. Garijo, D.; Gil, Y.; and Corcho, O. In Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, pages 94–104, 2014. IEEE Press
Towards workflow ecosystems through semantic and standard representations [pdf]Paper   doi   bibtex
Challenges for provenance analytics over geospatial data. Garijo, D.; Gil, Y.; and Harth, A. In International Provenance and Annotation Workshop, pages 261–263, 2014. Springer, Cham
Challenges for provenance analytics over geospatial data [pdf]Paper   doi   bibtex
  2013 (9)
Transforming meteorological data into linked data. Atemezing, G.; Corcho, O.; Garijo, D.; Mora, J.; Poveda-Villalón, M.; Rozas, P.; Vila-Suero, D.; and Villazón-Terrazas, B. Semantic Web, 4(3): 285–290. 2013.
Transforming meteorological data into linked data [pdf]Paper   doi   bibtex
A workflow PROV-corpus based on taverna and wings. Belhajjame, K.; Zhao, J.; Garijo, D.; Garrido, A.; Soiland-Reyes, S.; Alper, P.; and Corcho, O. In Proceedings of the Joint EDBT/ICDT 2013 Workshops, pages 331–332, 2013. ACM
A workflow PROV-corpus based on taverna and wings [pdf]Paper   doi   bibtex
PROV-O: The PROV ontology. Lebo, T.; Sahoo, S.; McGuinness, D.; Belhajjame, K.; Cheney, J.; Corsar, D.; Garijo, D.; Soiland-Reyes, S.; Zednik, S.; and Zhao, J. Technical Report 2013.
PROV-O: The PROV ontology [link]Paper   bibtex
Detecting common scientific workflow fragments using templates and execution provenance. Garijo, D.; Corcho, O.; and Gil, Y. In Proceedings of the seventh international conference on Knowledge capture, pages 33–40, 2013. ACM
Detecting common scientific workflow fragments using templates and execution provenance [pdf]Paper   doi   bibtex   3 downloads
Science, Semantic Web and Excuses. Pérez, I. S.; Garijo, D.; and Corcho, O. . 2013.
Science, Semantic Web and Excuses [link]Paper   bibtex
On specifying and sharing scientific workflow optimization results using research objects. Holl, S.; Garijo, D.; Belhajjame, K.; Zimmermann, O.; De Giovanni, R.; Obst, M.; and Goble, C. In Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, pages 28–37, 2013. ACM
On specifying and sharing scientific workflow optimization results using research objects [pdf]Paper   doi   bibtex
Quantifying reproducibility in computational biology: the case of the tuberculosis drugome. Garijo, D.; Kinnings, S.; Xie, L.; Xie, L.; Zhang, Y.; Bourne, P. E; and Gil, Y. PloS one, 8(11): e80278. 2013.
Quantifying reproducibility in computational biology: the case of the tuberculosis drugome [pdf]Paper   doi   bibtex   22 downloads
Dublin Core to PROV Mapping. Garijo, D.; and Eckert, K. Technical Report W3C, April 2013. http://www.w3.org/TR/2013/NOTE-prov-dc-20130430/
Dublin Core to PROV Mapping [link]Paper   bibtex
Wf4Ever research object model. Belhajjame, K; Klyne, G; Garijo, D; Corcho, O; García-Cuesta, E; and Palma, R Technical Report 2013.
Wf4Ever research object model [link]Paper   bibtex
  2012 (5)
Common motifs in scientific workflows: An empirical analysis. Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. In 2012 IEEE 8th International Conference on E-Science, pages 1-8, Oct 2012.
Common motifs in scientific workflows: An empirical analysis [pdf]Paper   doi   bibtex   2 downloads
Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse. Belhajjame, K.; Corcho, O.; Garijo, D.; Zhao, J.; Missier, P.; Newman, D.; Palma, R.; Bechhofer, S.; García, Esteban; Cuesta, J. M. G.; and others . 2012.
Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse [pdf]Paper   doi   bibtex
Publishing Linked Data-There is no One-Size-Fits-All Formula. Villazón-Terrazas, B.; Vila-Suero, D.; Garijo, D.; Vilches-Blázquez, L. M; Poveda-Villalón, M.; Mora, J.; Corcho, O.; and Gómez-Pérez, A. . 2012.
Publishing Linked Data-There is no One-Size-Fits-All Formula [pdf]Paper   bibtex
Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data. Garijo, D.; and Gil, Y. In Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC), Boston, MA, 2012.
Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data [pdf]Paper   bibtex   2 downloads
Prov model primer. Miles, S.; Gil, Y.; Belhajjame, K.; Deus, H.; Garijo, D.; Klyne, G.; Missier, P.; Soiland-Reyes, S.; and Zednik, S. Technical Report 2012.
Prov model primer [link]Paper   bibtex
  2011 (5)
A new approach for publishing workflows: abstractions, standards, and linked data. Garijo, D.; and Gil, Y. In Proceedings of the 6th workshop on Workflows in support of large-scale science, pages 47–56, 2011. ACM
A new approach for publishing workflows: abstractions, standards, and linked data [pdf]Paper   doi   bibtex   3 downloads
Metadata provenance: dublin core on the next level. Eckert, K.; Garijo, D.; Panzer, M.; and Perçin, Ö. In Proceedings of the 2011 International Conference on Dublin Core and Metadata Applications, pages 192–193, 2011. Dublin Core Metadata Initiative
Metadata provenance: dublin core on the next level [link]Paper   bibtex
Extending DCAM for metadata provenance. Eckert, K.; Garijo, D.; and Panzer, M. In International Conference on Dublin Core and Metadata Applications, pages 12–25, 2011.
Extending DCAM for metadata provenance [pdf]Paper   bibtex
A Provenance-Enabled Service for News and Blog Aggregation. Garijo Verdejo, D. Master's Thesis, Informatica, 2011.
A Provenance-Enabled Service for News and Blog Aggregation [link]Paper   bibtex
A Provenance-aware Linked Data Application for Trip Management and Organization. Garijo, D.; Villazón-Terrazas, B.; and Corcho, O. In Proceedings of the 7th International Conference on Semantic Systems, of I-Semantics '11, pages 224–226, New York, NY, USA, 2011. ACM
A Provenance-aware Linked Data Application for Trip Management and Organization [pdf]Paper   doi   bibtex
  2010 (1)
Provenance xg final report. Gil, Y.; Cheney, J.; Groth, P.; Hartig, O.; Miles, S.; Moreau, L.; and Pinheiro da Silva, P Technical Report 2010.
Provenance xg final report [link]Paper   bibtex