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2018 (6)

Navigating High Performance Computing (HPC) Resources. Sanders, S.; Papudeshi, B.; Ganote, C.; and Doak, T. . 10 2018.

Navigating High Performance Computing (HPC) Resources [link]

Website link bibtex abstract

@article{
 title = {Navigating High Performance Computing (HPC) Resources},
 type = {article},
 year = {2018},
 keywords = {Compute Resources,HPC training,NCGAS,Presentation},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/22511},
 month = {10},
 day = {4},
 id = {24329943-36cb-3df5-aeed-a9929c204c00},
 created = {2020-04-29T21:59:40.759Z},
 accessed = {2018-11-03},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:40.823Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. DBI-1759906 to Indiana University.},
 bibtype = {article},
 author = {Sanders, Sheri and Papudeshi, Bhavya and Ganote, Carrie and Doak, Tom}
}

RNA-Seq Demo on Galaxy. Ganote, C.; Papudeshi, B.; Sanders, S.; and Doak, T. . 10 2018.

Paper

Website link bibtex abstract

@article{
 title = {RNA-Seq Demo on Galaxy},
 type = {article},
 year = {2018},
 keywords = {Galaxy,HPC training,NCGAS,Presentation},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/22513},
 month = {10},
 day = {25},
 id = {c2f30881-a164-3b30-a5a1-20077b4c0f65},
 created = {2020-04-29T21:59:40.774Z},
 accessed = {2018-11-03},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:40.849Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. DBI-1759906 to Indiana University.},
 bibtype = {article},
 author = {Ganote, Carrie and Papudeshi, Bhavya and Sanders, Sheri and Doak, Tom}
}

Introduction to Metagenomics. Papudeshi, B.; Sanders, S.; Ganote, C.; and Doak, T. . 10 2018.

Paper

Website link bibtex abstract

@article{
 title = {Introduction to Metagenomics},
 type = {article},
 year = {2018},
 keywords = {HPC training,Jetstream,NCGAS,Presentation,metagenomics},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/22512},
 month = {10},
 day = {23},
 id = {f35fa7c4-d069-3d67-b630-ea1de153f45f},
 created = {2020-04-29T21:59:40.897Z},
 accessed = {2018-11-03},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:40.976Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. DBI-1759906 to Indiana University.},
 bibtype = {article},
 author = {Papudeshi, Bhavya and Sanders, Sheri and Ganote, Carrie and Doak, Tom}
}

National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream. Sanders, S.; Ganote, C.; Papudeshi, B.; and Doak, T. . 1 2018.

National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream [pdf]

Paper

National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream [link]

Website link bibtex abstract

@article{
 title = {National Center for Genome Analysis Support (NCGAS) use and development of Tripal Genome Browsers on XSEDE’s Jetstream},
 type = {article},
 year = {2018},
 keywords = {Genome Browsers,Jetstream,NCGAS},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21898},
 month = {1},
 publisher = {Plant and Animal Genomics 2018},
 day = {14},
 id = {57231807-67a2-3018-ac9e-fc593d50b7bf},
 created = {2020-04-29T21:59:40.950Z},
 accessed = {2018-08-10},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.036Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2018},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {article},
 author = {Sanders, Sheri and Ganote, Carrie and Papudeshi, Bhavya and Doak, Tom}
}

Bioinformatic analysis using Jetstream, a cloud computing environment. Papudeshi, B.; Sanders, S.; Ganote, C.; Fischer, J.; and Doak, T. . 1 2018.

Bioinformatic analysis using Jetstream, a cloud computing environment [link]

Website link bibtex abstract

@article{
 title = {Bioinformatic analysis using Jetstream, a cloud computing environment},
 type = {article},
 year = {2018},
 keywords = {PY8},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21900},
 month = {1},
 publisher = {Plant and Animal Genomics 2018},
 day = {15},
 id = {37470681-977f-3478-835b-46c323a0ee4f},
 created = {2020-04-29T21:59:40.953Z},
 accessed = {2018-08-10},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.052Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Papudeshi2018},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {article},
 author = {Papudeshi, Bhavya and Sanders, Sheri and Ganote, Carrie and Fischer, Jeremy and Doak, Tom}
}

Introducing CAFE: Computational Analysis of (gene) Family Evolution. Ganote, C.; Mendes, F.; Henschel, R.; Hahn, M.; and Fulton, B. . 1 2018.

Introducing CAFE: Computational Analysis of (gene) Family Evolution [link]

Website link bibtex abstract

@article{
 title = {Introducing CAFE: Computational Analysis of (gene) Family Evolution},
 type = {article},
 year = {2018},
 keywords = {PY8},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21899},
 month = {1},
 publisher = {Plant and Animal Genomics 2018},
 day = {15},
 id = {f9c753ef-e34d-3fbd-8aac-0f72388e14b6},
 created = {2020-04-29T21:59:41.209Z},
 accessed = {2018-08-10},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.274Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2018},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {article},
 author = {Ganote, Carrie and Mendes, Fabio and Henschel, Robert and Hahn, Matthew and Fulton, Ben}
}

2017 (5)

The National Center for Genome Analysis Support. Ganote, C.; Doak, T.; Blood, P.; and Sanders, S. In Great Lakes Bioinformatics Conference, Chicago, 5 2017.

The National Center for Genome Analysis Support [pdf]

Paper

The National Center for Genome Analysis Support [link]

Website link bibtex abstract

@inproceedings{
 title = {The National Center for Genome Analysis Support},
 type = {inproceedings},
 year = {2017},
 keywords = {PY6},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21477,https://www.youtube.com/playlist?list=PLqi-7yMgvZy_qGhVYev1waN00-GJabSG9},
 month = {5},
 day = {15},
 id = {fbe39a48-b1a9-3351-86c1-0e16a0a17ff8},
 created = {2020-04-29T21:59:41.027Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.134Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {true},
 hidden = {false},
 citation_key = {Ganote2017b},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Ganote, Carrie and Doak, Tom and Blood, Phil and Sanders, Sheri},
 booktitle = {Great Lakes Bioinformatics Conference, Chicago}
}

Cluster Quick Start. Sanders, S.; Doak, T.; and Ganote, C. Mount Desert Island Biological Laboratory. 7 2017.

Paper

Website link bibtex abstract

@article{
 title = {Cluster Quick Start},
 type = {article},
 year = {2017},
 keywords = {PY7},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21646},
 month = {7},
 day = {12},
 id = {dfb6214b-3615-32b2-8e01-d037719a89d7},
 created = {2020-04-29T21:59:41.542Z},
 accessed = {2017-09-01},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.618Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2017},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {article},
 author = {Sanders, Sheri and Doak, Tom and Ganote, Carrie},
 journal = {Mount Desert Island Biological Laboratory}
}

deNovo Transcriptome Assembly. Sanders, S.; Ganote, C.; and Doak, T. In Mount Desert Island Biological Laboratory, 7 2017.

Paper

Website link bibtex abstract

@inproceedings{
 title = {deNovo Transcriptome Assembly},
 type = {inproceedings},
 year = {2017},
 keywords = {PY7},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21645},
 month = {7},
 day = {13},
 id = {88d709fa-4180-3ef6-becb-0025edced22d},
 created = {2020-04-29T21:59:41.624Z},
 accessed = {2017-09-01},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:41.706Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2017a},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Mount Desert Island Biological Laboratory}
}

NCGAS: Providing National Cyberinfrastructure to Biologists, with a Focus on Genomics. Doak, T.; Blood, P.; Ganote, C.; and Sanders, S. In Great Plains Network Monthly Webinar, Online, 4 2017.

NCGAS: Providing National Cyberinfrastructure to Biologists, with a Focus on Genomics [link]

Website link bibtex abstract

@inproceedings{
 title = {NCGAS: Providing National Cyberinfrastructure to Biologists, with a Focus on Genomics},
 type = {inproceedings},
 year = {2017},
 keywords = {PY7},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21476},
 month = {4},
 day = {21},
 id = {44a7fb4e-f601-37b3-ba35-ebd060216e7b},
 created = {2020-04-29T21:59:41.739Z},
 accessed = {2017-08-31},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:41.800Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Doak2017},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Doak, T.G. and Blood, Phil and Ganote, Carrie and Sanders, Sheri},
 booktitle = {Great Plains Network Monthly Webinar, Online}
}

Supercomputing resources for open, accessible, reproducible genomic analysis. Blood, P. In Joint CAMI-M3 workshop on metagenomic software validation, 2017.

Supercomputing resources for open, accessible, reproducible genomic analysis [pdf]

Paper

Supercomputing resources for open, accessible, reproducible genomic analysis [link]

Website link bibtex

@inproceedings{
 title = {Supercomputing resources for open, accessible, reproducible genomic analysis},
 type = {inproceedings},
 year = {2017},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21479},
 id = {7fc2df0a-1144-36bb-914e-13add3a357b5},
 created = {2020-04-29T21:59:42.107Z},
 accessed = {2017-09-05},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.171Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Blood2017},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Blood, Philip},
 booktitle = {Joint CAMI-M3 workshop on metagenomic software validation},
 keywords = {PY7}
}

2016 (9)

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. Ghaffari, N.; Abante, J.; Singh, R.; Blood, P., D.; and Johnson, C., D. In Proceedings of the XSEDE16 on Diversity, Big Data, and Science at Scale - XSEDE16, pages 1-4, 2016. ACM Press

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data [pdf]

Paper

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data [link]

Website doi link bibtex

@inproceedings{
 title = {Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data},
 type = {inproceedings},
 year = {2016},
 keywords = {PY6},
 pages = {1-4},
 websites = {http://dl.acm.org/citation.cfm?doid=2949550.2949572},
 publisher = {ACM Press},
 city = {New York, New York, USA},
 id = {c0f26293-8e9a-3a9e-976d-fa964db7c2b6},
 created = {2020-04-29T21:59:38.872Z},
 accessed = {2017-09-05},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:38.951Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ghaffari2016},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ghaffari, Noushin and Abante, Jordi and Singh, Raminder and Blood, Philip D. and Johnson, Charles D.},
 doi = {10.1145/2949550.2949572},
 booktitle = {Proceedings of the XSEDE16 on Diversity, Big Data, and Science at Scale - XSEDE16}
}

The White Coats are Coming: The Growth, Success, and Future of Computing in Biology. Sanders, S.; Ganote, C.; and Doak, T. In Supercomputing, 11 2016.

The White Coats are Coming: The Growth, Success, and Future of Computing in Biology [pdf]

Paper

The White Coats are Coming: The Growth, Success, and Future of Computing in Biology [link]

Website link bibtex abstract

@inproceedings{
 title = {The White Coats are Coming: The Growth, Success, and Future of Computing in Biology},
 type = {inproceedings},
 year = {2016},
 keywords = {PY6},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21465},
 month = {11},
 day = {16},
 id = {5b5fecc2-c419-33a6-ae6f-6de5419219b5},
 created = {2020-04-29T21:59:41.147Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:41.222Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {true},
 hidden = {false},
 citation_key = {Sanders2016},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Supercomputing}
}

Navigating High Performance Computing (HPC) Resources. Sanders, S.; Ganote, C.; and Doak, T. In Workshop at Bethune-Cookman University, Daytona, FL, 4 2016.

Website link bibtex abstract

@inproceedings{
 title = {Navigating High Performance Computing (HPC) Resources},
 type = {inproceedings},
 year = {2016},
 keywords = {PY6},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21467},
 month = {4},
 day = {12},
 id = {a6dff6ab-7b24-3888-9bdc-0fff7bfdcd93},
 created = {2020-04-29T21:59:41.277Z},
 accessed = {2017-08-31},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:41.368Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2016a},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Workshop at Bethune-Cookman University, Daytona, FL}
}

Moving Off GUIs: A Guide to What’s Next. Sanders, S.; Ganote, C.; and Doak, T. In Indiana University, Bloomington, 10 2016.

Moving Off GUIs: A Guide to What’s Next [pdf]

Paper

Moving Off GUIs: A Guide to What’s Next [link]

Website link bibtex abstract

@inproceedings{
 title = {Moving Off GUIs: A Guide to What’s Next},
 type = {inproceedings},
 year = {2016},
 keywords = {Presentation,command line,tutorial},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21464},
 month = {10},
 day = {27},
 city = {PY6},
 id = {6f8208fe-6608-3258-bcf1-5f5d042399c8},
 created = {2020-04-29T21:59:41.336Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.434Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2016b},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Indiana University, Bloomington}
}

Moving Forward in Bioinformatics. Sanders, S.; Ganote, C.; and Doak, T. In Bethune-Cookman University, Daytona, FL, 11 2016.

Paper

Website link bibtex abstract

@inproceedings{
 title = {Moving Forward in Bioinformatics},
 type = {inproceedings},
 year = {2016},
 keywords = {PY6},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21466},
 month = {11},
 day = {30},
 id = {b1302a79-17ae-3de2-a428-7f80754b5ea3},
 created = {2020-04-29T21:59:41.511Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.649Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2016c},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Bethune-Cookman University, Daytona, FL}
}

Data Movement and Management. Sanders, S.; Ganote, C.; and Doak, T. In Mount Desert Island Biological Laboratory, 8 2016.

Paper

Website link bibtex abstract

@inproceedings{
 title = {Data Movement and Management},
 type = {inproceedings},
 year = {2016},
 keywords = {Presentation,data management,tutorial},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21463},
 month = {8},
 day = {4},
 id = {e001b388-47fd-3fd8-b155-0a189cfcce8c},
 created = {2020-04-29T21:59:41.622Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.702Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2016d},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Mount Desert Island Biological Laboratory}
}

Cluster Quick Guide. Sanders, S.; Ganote, C.; and Doak, T. In Mount Desert Island Biological Laboratory, 8 2016.

Paper

Website link bibtex abstract

@inproceedings{
 title = {Cluster Quick Guide},
 type = {inproceedings},
 year = {2016},
 keywords = {PY6},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21462},
 month = {8},
 day = {3},
 id = {78f80671-718f-35cf-9fc1-0735ab42a9fc},
 created = {2020-04-29T21:59:41.661Z},
 accessed = {2017-08-31},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.738Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2016e},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Sanders, Sheri and Ganote, Carrie and Doak, Tom},
 booktitle = {Mount Desert Island Biological Laboratory}
}

NCGAS: Providing National Cyberinfrastructure to Biologists, esp. Genomicists. Doak, T.; Blood, P.; Ganote, C.; and Sanders, S. In 2017 Kickoff Meeting, 2 2016.

NCGAS: Providing National Cyberinfrastructure to Biologists, esp. Genomicists. [link]

Website link bibtex abstract

@inproceedings{
 title = {NCGAS: Providing National Cyberinfrastructure to Biologists, esp. Genomicists.},
 type = {inproceedings},
 year = {2016},
 keywords = {Presentation},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/21473},
 month = {2},
 day = {16},
 id = {275eca70-5281-33e5-bef3-63644bcf74b9},
 created = {2020-04-29T21:59:41.814Z},
 accessed = {2017-08-31},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.879Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Doak2016},
 private_publication = {false},
 abstract = {This research is based upon work supported by the National Science Foundation under grant No. ABI-1458641 to Indiana University.},
 bibtype = {inproceedings},
 author = {Doak, T.G and Blood, Philip and Ganote, Carrie and Sanders, Sheri},
 booktitle = {2017 Kickoff Meeting}
}

Providing National Cyberinfrastructure to Biologists, esp. Genomicists. Doak, T.; and Heiskanen, M. In ITCR Presentations, 2016.

Providing National Cyberinfrastructure to Biologists, esp. Genomicists [link]

Website link bibtex

@inproceedings{
 title = {Providing National Cyberinfrastructure to Biologists, esp. Genomicists},
 type = {inproceedings},
 year = {2016},
 websites = {https://nciphub.org/resources/1816},
 id = {f36d31d2-7079-352b-9411-a4aa79dc1e49},
 created = {2020-04-29T21:59:42.252Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.311Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Doak2016a},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Doak, T and Heiskanen, M},
 booktitle = {ITCR Presentations}
}

2015 (4)

RNA-Seq Demo on Galaxy. Ganote, C.; Wu, L.; and Doak, T. In Campus and at Bioinformatics Clinic, 2015.

Paper

Website link bibtex

@inproceedings{
 title = {RNA-Seq Demo on Galaxy},
 type = {inproceedings},
 year = {2015},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20458},
 id = {f29b71b9-7fd1-3320-827f-7637691cd68c},
 created = {2020-04-29T21:59:42.127Z},
 accessed = {2017-05-12},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.198Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2015},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C and Wu, LS and Doak, T},
 booktitle = {Campus and at Bioinformatics Clinic}
}

Introduction to Galaxy 2015. Ganote, C.; Wu, L.; and Doak, T. In Bioinformatics Clinic at Indiana University, 2015.

Website link bibtex

@inproceedings{
 title = {Introduction to Galaxy 2015},
 type = {inproceedings},
 year = {2015},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20457},
 id = {74abbc2a-89d3-33f2-ba44-e4e8b0ac9ac9},
 created = {2020-04-29T21:59:42.514Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.619Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2015a},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C and Wu, LS and Doak, T},
 booktitle = {Bioinformatics Clinic at Indiana University}
}

Galaxy Deployments at Indiana University. Ganote, C. In Bioinformatics Clinic at Indiana University, 2015.

Galaxy Deployments at Indiana University [link]

Website link bibtex

@inproceedings{
 title = {Galaxy Deployments at Indiana University},
 type = {inproceedings},
 year = {2015},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20454},
 id = {d5212c28-8df0-3d55-9fb8-79ae6d49e4b5},
 created = {2020-04-29T21:59:42.815Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.868Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2015b},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C},
 booktitle = {Bioinformatics Clinic at Indiana University}
}

Automating work in Galaxy. Ganote, C.; Wu, L.; and Doak, T. In Bioinformatics Clinic at Indiana University, 2015.

Website link bibtex

@inproceedings{
 title = {Automating work in Galaxy},
 type = {inproceedings},
 year = {2015},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20459},
 id = {ee5bfb99-8664-3918-aab0-b65c0e6a3d9d},
 created = {2020-04-29T21:59:43.230Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:43.316Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2015c},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C and Wu, LS and Doak, T},
 booktitle = {Bioinformatics Clinic at Indiana University}
}

2014 (12)

Using National Cyberinfrastructure. Ganote, C.; and Doak, T. 9 2014.

Using National Cyberinfrastructure [pdf]

Paper

Using National Cyberinfrastructure [link]

Website link bibtex abstract

@misc{
 title = {Using National Cyberinfrastructure},
 type = {misc},
 year = {2014},
 source = {Southern Illinois at Carbondale Campus Visit},
 keywords = {Cyberinfrastructure,Presentation,XSEDE,iPlant},
 websites = {/citations?view_op=view_citation&continue=/scholar%253Fhl%253Den%2526as_sdt%253D0,15%2526scilib%253D1%2526scioq%253Dncgas%252B-%252522National%252BCenter%252Bfor%252BGenome%252BAnalysis%252BSupport%252522%252B-%252522New%252BComputer%252BGame%252BAttitude},
 month = {9},
 day = {4},
 id = {2b48cfa4-47a5-32e7-af26-f145651fce66},
 created = {2020-04-29T21:59:41.028Z},
 accessed = {2017-05-12},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.103Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {true},
 hidden = {false},
 citation_key = {Ganote2014b},
 private_publication = {false},
 abstract = {Presentation given at the Southern Illinois at Carbondale Campus Visit, September 3-4, 2014.},
 bibtype = {misc},
 author = {Ganote, Carrie and Doak, Thomas}
}

The National Center for Genome Analysis Support. Ganote, C.; Wu, L.; Doak, T.; and Barnett, W. . 2014.

Website link bibtex

@article{
 title = {The National Center for Genome Analysis Support},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20453},
 id = {c9781d9e-24c1-3ce9-88af-653aec98d1ff},
 created = {2020-04-29T21:59:41.894Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.955Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2014a},
 private_publication = {false},
 bibtype = {article},
 author = {Ganote, C and Wu, LS and Doak, T and Barnett, W}
}

Tackling Big Genomics Data. LeDuc, R. . 2014.

Website link bibtex

@article{
 title = {Tackling Big Genomics Data},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/17450},
 id = {f89f4c33-4d4e-33ab-8b07-09e197f1ff26},
 created = {2020-04-29T21:59:41.908Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.960Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2014},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, RD}
}

Quality Control and Assessment of RNA-Seq Data. Ganote, C.; Podicheti, R.; Wu, L.; and Doak, T. . 2014.

Quality Control and Assessment of RNA-Seq Data [link]

Website link bibtex

@article{
 title = {Quality Control and Assessment of RNA-Seq Data},
 type = {article},
 year = {2014},
 websites = {/citations?view_op=view_citation&continue=/scholar%253Fhl%253Den%2526as_sdt%253D0,15%2526scilib%253D1%2526scioq%253Dncgas%252B-%252522National%252BCenter%252Bfor%252BGenome%252BAnalysis%252BSupport%252522%252B-%252522New%252BComputer%252BGame%252BAttitude},
 id = {3410b380-461e-3d20-b9a1-ab223c7b82d9},
 created = {2020-04-29T21:59:42.140Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.224Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2014c},
 private_publication = {false},
 bibtype = {article},
 author = {Ganote, C and Podicheti, R and Wu, LS and Doak, T}
}

Providing National Cyberinfrastructure to Biologists, esp. genomicists. Barnett, W.; and Doak, T. Open Science Grid (OSG) All-Hands Meeting. 2014.

Website link bibtex

@article{
 title = {Providing National Cyberinfrastructure to Biologists, esp. genomicists},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20467},
 id = {47902448-86bc-3b6c-95a1-5f44dc4a1fda},
 created = {2020-04-29T21:59:42.184Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.239Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {true},
 hidden = {false},
 citation_key = {Barnett2014},
 private_publication = {false},
 bibtype = {article},
 author = {Barnett, WK and Doak, TG},
 journal = {Open Science Grid (OSG) All-Hands Meeting}
}

The National Center for Genome Analysis Support, IU and You!. Ganote, C.; and Barnett, W. . 2014.

The National Center for Genome Analysis Support, IU and You! [link]

Website link bibtex

@article{
 title = {The National Center for Genome Analysis Support, IU and You!},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/19035},
 id = {9a7e454a-d2ac-3179-8d20-49a8192d091a},
 created = {2020-04-29T21:59:42.401Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.507Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2014},
 private_publication = {false},
 bibtype = {article},
 author = {Ganote, C and Barnett, W}
}

Moving Large Data to Galaxy. Ganote, C.; Wu, L.; and Doak, T. In IU Bioinformatics Clinic, 2014.

Website link bibtex

@inproceedings{
 title = {Moving Large Data to Galaxy},
 type = {inproceedings},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18501},
 id = {46ee27af-68ed-365d-aa4f-df796347d364},
 created = {2020-04-29T21:59:42.414Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.472Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2014d},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C and Wu, LS and Doak, T},
 booktitle = {IU Bioinformatics Clinic}
}

Galaxy for Data Provenance. Ganote, C.; Wu, L.; and Doak, T. In IU Bioinformatics Clinic, 2014.

Website link bibtex

@inproceedings{
 title = {Galaxy for Data Provenance},
 type = {inproceedings},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18502},
 id = {e5cde60b-2dfe-3897-9285-4447dfb140ef},
 created = {2020-04-29T21:59:42.757Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.812Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Ganote2014e},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Ganote, C and Wu, LS and Doak, T},
 booktitle = {IU Bioinformatics Clinic}
}

Cyberinfrastructure Resources for Genomics Research. Hallock, B.; Ganote, C.; and Pespeni, M. In Plant and Animal Genome Conference XXII, 2014.

Cyberinfrastructure Resources for Genomics Research [link]

Website link bibtex

@inproceedings{
 title = {Cyberinfrastructure Resources for Genomics Research},
 type = {inproceedings},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18610},
 id = {fac807d3-c462-3d20-91ec-1d563cbd4066},
 created = {2020-04-29T21:59:43.002Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:43.096Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Hallock2014},
 private_publication = {false},
 bibtype = {inproceedings},
 author = {Hallock, B and Ganote, C and Pespeni, M},
 booktitle = {Plant and Animal Genome Conference XXII}
}

Introduction to genomics software use on high performance computing systems. Wu, L.; and Ganote, C. . 2014.

Introduction to genomics software use on high performance computing systems [link]

Website link bibtex

@article{
 title = {Introduction to genomics software use on high performance computing systems},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20814},
 id = {fc73ebef-268e-3947-a691-b95b475cdaa3},
 created = {2020-04-29T21:59:43.037Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:43.089Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Wu2014},
 private_publication = {false},
 bibtype = {article},
 author = {Wu, LS and Ganote, C}
}

Galaxy Deployment on Heterogenous Hardware. Ganote, C.; and Hayashi, S. . 2014.

Galaxy Deployment on Heterogenous Hardware [link]

Website link bibtex

@article{
 title = {Galaxy Deployment on Heterogenous Hardware},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18500},
 id = {f64afcff-771f-34cd-9a97-e34f9048d932},
 created = {2020-04-29T21:59:43.224Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:43.287Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {true},
 hidden = {false},
 citation_key = {Ganote2014f},
 private_publication = {false},
 bibtype = {article},
 author = {Ganote, C and Hayashi, S}
}

Computing challenges in working with genomics-scale data. Wu, L.; and Ganote, C. . 2014.

Computing challenges in working with genomics-scale data [link]

Website link bibtex

@article{
 title = {Computing challenges in working with genomics-scale data},
 type = {article},
 year = {2014},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/20815},
 id = {6d66f8f7-b88a-35d2-90ea-5df014df9caf},
 created = {2020-04-29T21:59:43.347Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:43.408Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Wu2014a},
 private_publication = {false},
 bibtype = {article},
 author = {Wu, LS and Ganote, C}
}

2013 (9)

Using Prior Knowledge to Improve Scoring in High-Throughput Top-Down Proteomics Experiments. LeDuc, R.; and Wu, L. . 2013.

Using Prior Knowledge to Improve Scoring in High-Throughput Top-Down Proteomics Experiments [link]

Website link bibtex

@article{
 title = {Using Prior Knowledge to Improve Scoring in High-Throughput Top-Down Proteomics Experiments},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/16680},
 id = {6f00a580-ebd1-3077-a752-b1febf590e42},
 created = {2020-04-29T21:59:41.868Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.926Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2013},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, RD and Wu, LS}
}

The National Center for Genome Analysis and Support. LeDuc, R.; and Barnett, W. . 2013.

The National Center for Genome Analysis and Support [link]

Website link bibtex

@article{
 title = {The National Center for Genome Analysis and Support},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/15283},
 id = {7933f883-e92a-36a8-9f51-8a1411ce6f66},
 created = {2020-04-29T21:59:41.880Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:41.937Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2013a},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, R and Barnett, WK}
}

Statistical Consideration for Identification and Quantification in Top-Down Proteomics. LeDuc, R. . 2013.

Statistical Consideration for Identification and Quantification in Top-Down Proteomics [link]

Website link bibtex

@article{
 title = {Statistical Consideration for Identification and Quantification in Top-Down Proteomics},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/15284},
 id = {4ee26119-3125-3f13-8a12-e1b69922ce25},
 created = {2020-04-29T21:59:41.995Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
 group_id = {03cd53f1-2dbe-39bc-9619-9ca95b8e9222},
 last_modified = {2020-04-29T21:59:42.048Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2013b},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, R}
}

National Center for Genome Analysis Support Leverages XSEDE Resources to Support Life Scientists. Barnett, W.; and LeDuc, R. . 2013.

National Center for Genome Analysis Support Leverages XSEDE Resources to Support Life Scientists [link]

Website link bibtex

@article{
 title = {National Center for Genome Analysis Support Leverages XSEDE Resources to Support Life Scientists},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/16744},
 id = {c7bcd182-20d3-35db-becd-d225a94fded9},
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 author = {Barnett, WK and LeDuc, RD}
}

Optimizing the National Cyberinfrastructure for Lower Bioinformatic Costs: Making the Most of Resources for Publicly Funded Research. Barnett, W.; and LeDuc, R. . 2013.

Optimizing the National Cyberinfrastructure for Lower Bioinformatic Costs: Making the Most of Resources for Publicly Funded Research [link]

Website link bibtex

@article{
 title = {Optimizing the National Cyberinfrastructure for Lower Bioinformatic Costs: Making the Most of Resources for Publicly Funded Research},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18612},
 id = {f422ad61-1517-3b73-9836-17a4e634235f},
 created = {2020-04-29T21:59:42.370Z},
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 last_modified = {2020-04-29T21:59:42.583Z},
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 citation_key = {Barnett2013b},
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}

Intro to Using Galaxy for Bioinformatics. Ganote, C.; and Doak, T. . 2013.

Intro to Using Galaxy for Bioinformatics [pdf]

Paper

Intro to Using Galaxy for Bioinformatics [link]

Website link bibtex

@article{
 title = {Intro to Using Galaxy for Bioinformatics},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/17204},
 id = {6e8f9f2e-223f-3b80-8f62-84164973b1a5},
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Intro to Bioinformatics-Assembling a Transcriptome. Ganote, C.; and Doak, T. . 2013.

Intro to Bioinformatics-Assembling a Transcriptome [link]

Website link bibtex

@article{
 title = {Intro to Bioinformatics-Assembling a Transcriptome},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/16682},
 id = {2db07330-f163-3869-a2a7-12dddf7eb99a},
 created = {2020-04-29T21:59:42.660Z},
 accessed = {2017-05-12},
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 last_modified = {2020-04-29T21:59:42.768Z},
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}

Next Generation Cyberinfrastructures for Next Generation Sequencing and Genome Science. Barnett, W.; and LeDuc, R. . 2013.

Next Generation Cyberinfrastructures for Next Generation Sequencing and Genome Science [link]

Website link bibtex

@article{
 title = {Next Generation Cyberinfrastructures for Next Generation Sequencing and Genome Science},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/16668},
 id = {2ce7dd98-cd28-3002-8bc9-cbc383ed0c9d},
 created = {2020-04-29T21:59:42.953Z},
 accessed = {2017-05-12},
 file_attached = {false},
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 last_modified = {2020-04-29T21:59:43.041Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Barnett2013a},
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 author = {Barnett, WK and LeDuc, R}
}

Galaxy based BLAST submission to distributed national high throughput computing resources. Hayashi, S.; Gesing, S.; Quick, R.; Teige, S.; and Ganote, C. . 2013.

Galaxy based BLAST submission to distributed national high throughput computing resources [pdf]

Paper

Galaxy based BLAST submission to distributed national high throughput computing resources [link]

Website link bibtex

@article{
 title = {Galaxy based BLAST submission to distributed national high throughput computing resources},
 type = {article},
 year = {2013},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/18609},
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 created = {2020-04-29T21:59:42.954Z},
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 last_modified = {2020-04-29T21:59:43.045Z},
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 starred = {false},
 authored = {false},
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 author = {Hayashi, S and Gesing, S and Quick, R and Teige, S and Ganote, C}
}

2012 (3)

High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales. Barnett, W.; and LeDuc, R. . 2012.

High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales [link]

Website link bibtex

@article{
 title = {High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales},
 type = {article},
 year = {2012},
 websites = {https://scholarworks.iu.edu/dspace/bitstream/handle/2022/14540/Bio-ITWorldAsia-2012-Barnett-June5.ppt?sequence=1&isAllowed=y},
 id = {ffcaf0ba-e2d2-3764-9127-02fb276aa84d},
 created = {2020-04-29T21:59:42.683Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:42.756Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {Barnett2012},
 private_publication = {false},
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 author = {Barnett, WK and LeDuc, R}
}

Genomics, Transcriptomics, and Proteomics: Engaging Biologists. LeDuc, R. . 2012.

Genomics, Transcriptomics, and Proteomics: Engaging Biologists [link]

Website link bibtex

@article{
 title = {Genomics, Transcriptomics, and Proteomics: Engaging Biologists},
 type = {article},
 year = {2012},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/14746},
 id = {fc7b67b7-026a-3302-bf8e-1e6c6265814f},
 created = {2020-04-29T21:59:42.769Z},
 accessed = {2017-05-12},
 file_attached = {false},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:42.858Z},
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 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2012},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, RD}
}

Careers in Computing and Science. LeDuc, R. . 2012.

Paper

Website link bibtex

@article{
 title = {Careers in Computing and Science},
 type = {article},
 year = {2012},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/14745},
 id = {2d74f457-63cb-3704-8f3f-92860b0711e4},
 created = {2020-04-29T21:59:43.045Z},
 accessed = {2017-05-12},
 file_attached = {true},
 profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},
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 last_modified = {2020-04-29T21:59:43.118Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 citation_key = {LeDuc2012a},
 private_publication = {false},
 bibtype = {article},
 author = {LeDuc, RD}
}

undefined (2)

International Plant and Animal Genome XXVIII.

Website link bibtex

@misc{
 title = {International Plant and Animal Genome XXVIII},
 type = {misc},
 websites = {https://plan.core-apps.com/pag_2020/event/113c3cf6f8416ef27402b60534ad197d},
 id = {861a55b3-e2b4-3bc8-8e7d-f312b62ba16b},
 created = {2020-04-29T21:59:40.680Z},
 accessed = {2020-02-28},
 file_attached = {false},
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 last_modified = {2020-04-29T21:59:40.733Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
 private_publication = {false},
 bibtype = {misc},
 author = {}
}

International Plant and Animal Genome XXVII.

Website link bibtex

@misc{
 title = {International Plant and Animal Genome XXVII},
 type = {misc},
 websites = {https://plan.core-apps.com/pag_2019/abstract/6e070c0ebde6a5b908f9f08fb2eecd05},
 id = {950fe39f-ae8b-3d03-ab45-46920971d420},
 created = {2020-04-29T21:59:40.701Z},
 accessed = {2019-01-28},
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 last_modified = {2020-04-29T21:59:40.771Z},
 read = {false},
 starred = {false},
 authored = {false},
 confirmed = {false},
 hidden = {false},
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 bibtype = {misc},
 author = {}
}