BibBase chumsakul, o

2024 (2)

GeF-seq: A Simple Procedure for Base-Pair Resolution ChIP-seq. Chumsakul, O.; Nakamura, K.; Fukamachi, K.; Ishikawa, S.; and Oshima, T. In Bacterial Chromatin: Methods and Protocols, pages 39–53. Springer US New York, NY, 2024.
link bibtex

@incollection{chumsakul2024gef,
  title={GeF-seq: A Simple Procedure for Base-Pair Resolution ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Fukamachi, Kazuki and Ishikawa, Shu and Oshima, Taku},
  booktitle={Bacterial Chromatin: Methods and Protocols},
  pages={39--53},
  year={2024},
  publisher={Springer US New York, NY}
}

miR-4521—A novel biomarker for human lentigos. Maeno, H.; Suzuki-Horiuchi, Y.; Funakoshi, A.; Chumsakul, O.; Sato, Y.; Ishii, T.; and Seykora, J. T Experimental dermatology, 33(6). 2024.
link bibtex

@article{maeno2024mir,
  title={miR-4521—A novel biomarker for human lentigos.},
  author={Maeno, Hiroshi and Suzuki-Horiuchi, Yoko and Funakoshi, Ayaka and Chumsakul, Onuma and Sato, Yasunari and Ishii, Tsuyoshi and Seykora, John T},
  journal={Experimental dermatology},
  volume={33},
  number={6},
  year={2024}
}

2022 (1)

Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production. Yamamoto, J.; Chumsakul, O.; Toya, Y.; Morimoto, T.; Liu, S.; Masuda, K.; Kageyama, Y.; Hirasawa, T.; Matsuda, F.; Ogasawara, N.; and others DNA Research, 29(3): dsac015. 2022.
link bibtex

@article{yamamoto2022constitutive,
  title={Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production},
  author={Yamamoto, Junya and Chumsakul, Onuma and Toya, Yoshihiro and Morimoto, Takuya and Liu, Shenghao and Masuda, Kenta and Kageyama, Yasushi and Hirasawa, Takashi and Matsuda, Fumio and Ogasawara, Naotake and others},
  journal={DNA Research},
  volume={29},
  number={3},
  pages={dsac015},
  year={2022},
  publisher={Oxford University Press}
}

2021 (1)

Whole-genome analysis reveals that the nucleoid protein IHF predominantly binds to the replication origin oriC specifically at the time of initiation. Kasho, K.; Oshima, T.; Chumsakul, O.; Nakamura, K.; Fukamachi, K.; and Katayama, T. Frontiers in Microbiology, 12: 697712. 2021.
link bibtex

@article{kasho2021whole,
  title={Whole-genome analysis reveals that the nucleoid protein IHF predominantly binds to the replication origin oriC specifically at the time of initiation},
  author={Kasho, Kazutoshi and Oshima, Taku and Chumsakul, Onuma and Nakamura, Kensuke and Fukamachi, Kazuki and Katayama, Tsutomu},
  journal={Frontiers in Microbiology},
  volume={12},
  pages={697712},
  year={2021},
  publisher={Frontiers Media SA}
}

2020 (1)

Apigenin regulates activation of microglia and counteracts retinal degeneration. Chumsakul, O.; Wakayama, K.; Tsuhako, A.; Baba, Y.; Takai, Y.; Kurose, T.; Honma, Y.; and Watanabe, S. Journal of Ocular Pharmacology and Therapeutics, 36(5): 311–319. 2020.
link bibtex

@article{chumsakul2020apigenin,
  title={Apigenin regulates activation of microglia and counteracts retinal degeneration},
  author={Chumsakul, Onuma and Wakayama, Kanaho and Tsuhako, Asano and Baba, Yukihiro and Takai, Yoshihiro and Kurose, Takahiro and Honma, Yoichi and Watanabe, Sumiko},
  journal={Journal of Ocular Pharmacology and Therapeutics},
  volume={36},
  number={5},
  pages={311--319},
  year={2020},
  publisher={Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New~…}
}

2019 (1)

Apigenin Inhibits LPS-induced Microglia Activation by Modulating MicroRNA Expression. Chumsakul, O.; Takai, Y.; Kurose, T.; and Honma, Y. Investigative Ophthalmology & Visual Science, 60(9): 3998–3998. 2019.
link bibtex

@article{chumsakul2019apigenin,
  title={Apigenin Inhibits LPS-induced Microglia Activation by Modulating MicroRNA Expression},
  author={Chumsakul, Onuma and Takai, Yoshihiro and Kurose, Takahiro and Honma, Yoichi},
  journal={Investigative Ophthalmology \& Visual Science},
  volume={60},
  number={9},
  pages={3998--3998},
  year={2019},
  publisher={The Association for Research in Vision and Ophthalmology}
}

2018 (1)

GeF-seq: A simple procedure for base pair resolution ChIP-seq. Chumsakul, O.; Nakamura, K.; Ishikawa, S.; and Oshima, T. In Bacterial Chromatin: Methods and Protocols, pages 33–47. Springer New York New York, NY, 2018.
link bibtex

@incollection{chumsakul2018gef,
  title={GeF-seq: A simple procedure for base pair resolution ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Ishikawa, Shu and Oshima, Taku},
  booktitle={Bacterial Chromatin: Methods and Protocols},
  pages={33--47},
  year={2018},
  publisher={Springer New York New York, NY}
}

2017 (1)

Genome-wide analysis of ResD, NsrR, and Fur binding in Bacillus subtilis during anaerobic fermentative growth by in vivo footprinting. Chumsakul, O.; Anantsri, D. P; Quirke, T.; Oshima, T.; Nakamura, K.; Ishikawa, S.; and Nakano, M. M Journal of bacteriology, 199(13): 10–1128. 2017.
link bibtex

@article{chumsakul2017genome,
  title={Genome-wide analysis of ResD, NsrR, and Fur binding in Bacillus subtilis during anaerobic fermentative growth by in vivo footprinting},
  author={Chumsakul, Onuma and Anantsri, Divya P and Quirke, Tai and Oshima, Taku and Nakamura, Kensuke and Ishikawa, Shu and Nakano, Michiko M},
  journal={Journal of bacteriology},
  volume={199},
  number={13},
  pages={10--1128},
  year={2017},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

2016 (1)

Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli. Akiyama, M. T.; Oshima, T.; Chumsakul, O.; Ishikawa, S.; and Maki, H. Genes to Cells, 21(8): 907–914. 2016.
link bibtex

@article{akiyama2016replication,
  title={Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli},
  author={Akiyama, Masahiro Tatsumi and Oshima, Taku and Chumsakul, Onuma and Ishikawa, Shu and Maki, Hisaji},
  journal={Genes to Cells},
  volume={21},
  number={8},
  pages={907--914},
  year={2016}
}

2015 (3)

Hyperphosphorylation of DegU cancels CcpA-dependent catabolite repression of rocG in Bacillus subtilis. Tanaka, K.; Iwasaki, K.; Morimoto, T.; Matsuse, T.; Hasunuma, T.; Takenaka, S.; Chumsakul, O.; Ishikawa, S.; Ogasawara, N.; and Yoshida, K. BMC microbiology, 15(1): 43. 2015.
link bibtex

@article{tanaka2015hyperphosphorylation,
  title={Hyperphosphorylation of DegU cancels CcpA-dependent catabolite repression of rocG in Bacillus subtilis},
  author={Tanaka, Kosei and Iwasaki, Kana and Morimoto, Takuya and Matsuse, Takatsugu and Hasunuma, Tomohisa and Takenaka, Shinji and Chumsakul, Onuma and Ishikawa, Shu and Ogasawara, Naotake and Yoshida, Ken-ichi},
  journal={BMC microbiology},
  volume={15},
  number={1},
  pages={43},
  year={2015},
  publisher={BioMed Central London}
}

Enhanced dipicolinic acid production during the stationary phase in Bacillus subtilis by blocking acetoin synthesis. Toya, Y.; Hirasawa, T.; Ishikawa, S.; Chumsakul, O.; Morimoto, T.; Liu, S.; Masuda, K.; Kageyama, Y.; Ozaki, K.; Ogasawara, N.; and others Bioscience, biotechnology, and biochemistry, 79(12): 2073–2080. 2015.
link bibtex

@article{toya2015enhanced,
  title={Enhanced dipicolinic acid production during the stationary phase in Bacillus subtilis by blocking acetoin synthesis},
  author={Toya, Yoshihiro and Hirasawa, Takashi and Ishikawa, Shu and Chumsakul, Onuma and Morimoto, Takuya and Liu, Shenghao and Masuda, Kenta and Kageyama, Yasushi and Ozaki, Katsuya and Ogasawara, Naotake and others},
  journal={Bioscience, biotechnology, and biochemistry},
  volume={79},
  number={12},
  pages={2073--2080},
  year={2015},
  publisher={Oxford University Press}
}

The role of $α$-CTD in the genome-wide transcriptional regulation of the Bacillus subtilis cells. Murayama, S.; Ishikawa, S.; Chumsakul, O.; Ogasawara, N.; and Oshima, T. PloS one, 10(7): e0131588. 2015.
link bibtex

@article{murayama2015role,
  title={The role of $\alpha$-CTD in the genome-wide transcriptional regulation of the Bacillus subtilis cells},
  author={Murayama, Satohiko and Ishikawa, Shu and Chumsakul, Onuma and Ogasawara, Naotake and Oshima, Taku},
  journal={PloS one},
  volume={10},
  number={7},
  pages={e0131588},
  year={2015},
  publisher={Public Library of Science San Francisco, CA USA}
}

2014 (1)

The ResD response regulator, through functional interaction with NsrR and fur, plays three distinct roles in Bacillus subtilis transcriptional control. Henares, B.; Kommineni, S.; Chumsakul, O.; Ogasawara, N.; Ishikawa, S.; and Nakano, M. M Journal of bacteriology, 196(2): 493–503. 2014.
link bibtex

@article{henares2014resd,
  title={The ResD response regulator, through functional interaction with NsrR and fur, plays three distinct roles in Bacillus subtilis transcriptional control},
  author={Henares, Bernadette and Kommineni, Sushma and Chumsakul, Onuma and Ogasawara, Naotake and Ishikawa, Shu and Nakano, Michiko M},
  journal={Journal of bacteriology},
  volume={196},
  number={2},
  pages={493--503},
  year={2014},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

2013 (2)

High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq. Chumsakul, O.; Nakamura, K.; Kurata, T.; Sakamoto, T.; Hobman, J. L; Ogasawara, N.; Oshima, T.; and Ishikawa, S. DNA research, 20(4): 325–338. 2013.
link bibtex

@article{chumsakul2013high,
  title={High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Kurata, Tetsuya and Sakamoto, Tomoaki and Hobman, Jon L and Ogasawara, Naotake and Oshima, Taku and Ishikawa, Shu},
  journal={DNA research},
  volume={20},
  number={4},
  pages={325--338},
  year={2013},
  publisher={Oxford University Press}
}

Enhanced Cry1Da production in Bacillus thuringiensis by driving expression from the $σ$E-dependent BtI promoter. Wanapaisan, P; Chumsakul, O; and Panbangred, W Journal of applied microbiology, 115(3): 859–871. 2013.
link bibtex

@article{wanapaisan2013enhanced,
  title={Enhanced Cry1Da production in Bacillus thuringiensis by driving expression from the $\sigma$E-dependent BtI promoter},
  author={Wanapaisan, P and Chumsakul, O and Panbangred, W},
  journal={Journal of applied microbiology},
  volume={115},
  number={3},
  pages={859--871},
  year={2013},
  publisher={Blackwell Science Ltd Oxford, UK}
}

2011 (1)

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Chumsakul, O.; Takahashi, H.; Oshima, T.; Hishimoto, T.; Kanaya, S.; Ogasawara, N.; and Ishikawa, S. Nucleic acids research, 39(2): 414–428. 2011.
link bibtex

@article{chumsakul2011genome,
  title={Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation},
  author={Chumsakul, Onuma and Takahashi, Hiroki and Oshima, Taku and Hishimoto, Takahiro and Kanaya, Shigehiko and Ogasawara, Naotake and Ishikawa, Shu},
  journal={Nucleic acids research},
  volume={39},
  number={2},
  pages={414--428},
  year={2011},
  publisher={Oxford University Press}
}

2010 (1)

Distribution of AbrB and Abh on the Bacillus subtilis genome and its implication on their function. Chumsakul, O. . 2010.
link bibtex

@article{chumsakul2010distribution,
  title={Distribution of AbrB and Abh on the Bacillus subtilis genome and its implication on their function},
  author={Chumsakul, Onuma},
  year={2010},
  publisher={Nara Institute of Science and Technology}
}