BibBase bibbase.org/network/files/9wiyLjRaX28rSboz5

2025 (1)

Bacillus velezensis S141 improves the root growth of soybean under drought conditions. Kondo, T.; Sibponkrung, S.; Tittabutr, P.; Boonkerd, N.; Ishikawa, S.; Teaumroong, N.; and Yoshida, K. Bioscience, Biotechnology, and Biochemistry, 89(2): 304–312. 2025.
link bibtex

@article{kondo2025bacillus,
  title={Bacillus velezensis S141 improves the root growth of soybean under drought conditions},
  author={Kondo, Takahiko and Sibponkrung, Surachat and Tittabutr, Panlada and Boonkerd, Nantakorn and Ishikawa, Shu and Teaumroong, Neung and Yoshida, Ken-ichi},
  journal={Bioscience, Biotechnology, and Biochemistry},
  volume={89},
  number={2},
  pages={304--312},
  year={2025},
  publisher={Oxford University Press}
}

2024 (5)

High-throughput evaluation of hemolytic activity through precise measurement of colony and hemolytic zone sizes of engineered Bacillus subtilis on blood agar. Bamba, T.; Aoki, R.; Hori, Y.; Ishikawa, S.; Yoshida, K.; Taoka, N.; Kobayashi, S.; Yasueda, H.; Kondo, A.; and Hasunuma, T. Biology Methods and Protocols, 9(1): bpae044. 2024.
link bibtex

@article{bamba2024high,
  title={High-throughput evaluation of hemolytic activity through precise measurement of colony and hemolytic zone sizes of engineered Bacillus subtilis on blood agar},
  author={Bamba, Takahiro and Aoki, Rina and Hori, Yoshimi and Ishikawa, Shu and Yoshida, Ken-ichi and Taoka, Naoaki and Kobayashi, Shingo and Yasueda, Hisashi and Kondo, Akihiko and Hasunuma, Tomohisa},
  journal={Biology Methods and Protocols},
  volume={9},
  number={1},
  pages={bpae044},
  year={2024},
  publisher={Oxford University Press}
}

Efficient pathway-driven scyllo-inositol production from myo-inositol using thermophilic cells and mesophilic inositol dehydrogenases: a novel strategy for pathway control. Kurashiki, R.; Takahashi, M.; Okumura, Y.; Ono, T.; Endo, H.; Makino, K.; Fukui, K.; Yokoyama, K.; Ishikawa, S.; Yoshida, K.; and others Applied and Environmental Microbiology, 90(7): e00281–24. 2024.
link bibtex

@article{kurashiki2024efficient,
  title={Efficient pathway-driven scyllo-inositol production from myo-inositol using thermophilic cells and mesophilic inositol dehydrogenases: a novel strategy for pathway control},
  author={Kurashiki, Ryota and Takahashi, Masahiro and Okumura, Yuta and Ono, Tatsuya and Endo, Hirofumi and Makino, Kohei and Fukui, Kaho and Yokoyama, Kyosuke and Ishikawa, Shu and Yoshida, Ken-ichi and others},
  journal={Applied and Environmental Microbiology},
  volume={90},
  number={7},
  pages={e00281--24},
  year={2024},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

GeF-seq: A Simple Procedure for Base-Pair Resolution ChIP-seq. Chumsakul, O.; Nakamura, K.; Fukamachi, K.; Ishikawa, S.; and Oshima, T. In Bacterial Chromatin: Methods and Protocols, pages 39–53. Springer US New York, NY, 2024.
link bibtex

@incollection{chumsakul2024gef,
  title={GeF-seq: A Simple Procedure for Base-Pair Resolution ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Fukamachi, Kazuki and Ishikawa, Shu and Oshima, Taku},
  booktitle={Bacterial Chromatin: Methods and Protocols},
  pages={39--53},
  year={2024},
  publisher={Springer US New York, NY}
}

Bacillus subtilis grown in a “breathing” vessel without sparger aeration. Yoshida, K.; Yokoyama, K.; Öktem, A.; Ishikawa, S.; van Dijl, J. M.; Yotsuya, M.; and Sato, R. Bioscience, Biotechnology, and Biochemistry, 88(11): 1389–1393. 2024.
link bibtex

@article{yoshida2024bacillus,
  title={Bacillus subtilis grown in a “breathing” vessel without sparger aeration},
  author={Yoshida, Ken-ichi and Yokoyama, Kyosuke and {\"O}ktem, Ay{\c{s}}eg{\"u}l and Ishikawa, Shu and van Dijl, Jan Maarten and Yotsuya, Masato and Sato, Ryosuke},
  journal={Bioscience, Biotechnology, and Biochemistry},
  volume={88},
  number={11},
  pages={1389--1393},
  year={2024},
  publisher={Oxford University Press}
}

Screening to isolate Bacillus subtilis mutants with enhanced NADPH levels. Wu, Y.; Ishikawa, S.; and Yoshida, K. The Journal of general and applied microbiology. 2024.
link bibtex

@article{wu2024screening,
  title={Screening to isolate Bacillus subtilis mutants with enhanced NADPH levels},
  author={Wu, Yuzheng and Ishikawa, Shu and Yoshida, Ken-Ichi},
  journal={The Journal of general and applied microbiology},
  year={2024}
}

2023 (4)

A critical role of the periplasm in copper homeostasis in Gram-negative bacteria. Ishihara, J.; Mekubo, T.; Kusaka, C.; Kondo, S.; Oiko, R.; Igarashi, K.; Aiba, H.; Ishikawa, S.; Ogasawara, N.; Oshima, T.; and others Biosystems, 231: 104980. 2023.
link bibtex

@article{ishihara2023critical,
  title={A critical role of the periplasm in copper homeostasis in Gram-negative bacteria},
  author={Ishihara, Jun-ichi and Mekubo, Tomohiro and Kusaka, Chikako and Kondo, Suguru and Oiko, Ryotaro and Igarashi, Kensuke and Aiba, Hirofumi and Ishikawa, Shu and Ogasawara, Naotake and Oshima, Taku and others},
  journal={Biosystems},
  volume={231},
  pages={104980},
  year={2023},
  publisher={Elsevier}
}

Bacillus velezensis S141, a soybean growth-promoting bacterium, hydrolyzes isoflavone glycosides into aglycones. Kondo, T.; Sibponkrung, S.; Hironao, K.; Tittabutr, P.; Boonkerd, N.; Ishikawa, S.; Ashida, H.; Teaumroong, N.; and Yoshida, K. The Journal of General and Applied Microbiology, 69(3): 175–183. 2023.
link bibtex

@article{kondo2023bacillus,
  title={Bacillus velezensis S141, a soybean growth-promoting bacterium, hydrolyzes isoflavone glycosides into aglycones.},
  author={Kondo, Takahiko and Sibponkrung, Surachat and Hironao, Ken-yu and Tittabutr, Panlada and Boonkerd, Nantakorn and Ishikawa, Shu and Ashida, Hitoshi and Teaumroong, Neung and Yoshida, Ken-ichi},
  journal={The Journal of General and Applied Microbiology},
  volume={69},
  number={3},
  pages={175--183},
  year={2023},
  publisher={Applied Microbiology, Molecular and Cellular Biosciences Research Foundation}
}

Genes encoding a novel thermostable bacteriocin in the thermophilic bacterium Aeribacillus pallidus PI8. Kita, K.; Yoshida, S.; Masuo, S.; Nakamura, A.; Ishikawa, S.; and Yoshida, K. Journal of Applied Microbiology, 134(12): lxad293. 2023.
link bibtex

@article{kita2023genes,
  title={Genes encoding a novel thermostable bacteriocin in the thermophilic bacterium Aeribacillus pallidus PI8},
  author={Kita, Kyosuke and Yoshida, Sanako and Masuo, Shunsuke and Nakamura, Akira and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={Journal of Applied Microbiology},
  volume={134},
  number={12},
  pages={lxad293},
  year={2023},
  publisher={Oxford University Press}
}

Bacterial and fungal bioburden reduction on material surfaces using various sterilization techniques suitable for spacecraft decontamination. Kimura, S.; Ishikawa, S.; Hayashi, N.; Fujita, K.; Inatomi, Y.; and Suzuki, S. Frontiers in Microbiology, 14: 1253436. 2023.
link bibtex

@article{kimura2023bacterial,
  title={Bacterial and fungal bioburden reduction on material surfaces using various sterilization techniques suitable for spacecraft decontamination},
  author={Kimura, Shunta and Ishikawa, Shu and Hayashi, Nobuya and Fujita, Kazuhisa and Inatomi, Yuko and Suzuki, Shino},
  journal={Frontiers in Microbiology},
  volume={14},
  pages={1253436},
  year={2023},
  publisher={Frontiers Media SA}
}

2022 (5)

A novel method for transforming Geobacillus kaustophilus with a chromosomal segment of Bacillus subtilis transferred via pLS20-dependent conjugation. Mori, K.; Fukui, K.; Amatsu, R.; Ishikawa, S.; Verrone, V.; Wipat, A.; Meijer, W. J.; and Yoshida, K. Microbial Cell Factories, 21(1): 34. 2022.
link bibtex

@article{mori2022novel,
  title={A novel method for transforming Geobacillus kaustophilus with a chromosomal segment of Bacillus subtilis transferred via pLS20-dependent conjugation},
  author={Mori, Kotaro and Fukui, Kaho and Amatsu, Ryotaro and Ishikawa, Shu and Verrone, Valeria and Wipat, Anil and Meijer, Wilfried JJ and Yoshida, Ken-ichi},
  journal={Microbial Cell Factories},
  volume={21},
  number={1},
  pages={34},
  year={2022},
  publisher={BioMed Central London}
}

Functional analysis of a gene cluster for putative bacteriocin deduced from the genome sequence of Aeribacillus pallidus PI8. Kita, K.; Yoshida, S.; Ishikawa, S.; and Yoshida, K. The Journal of General and Applied Microbiology, 68(2): 87–94. 2022.
link bibtex

@article{kita2022functional,
  title={Functional analysis of a gene cluster for putative bacteriocin deduced from the genome sequence of Aeribacillus pallidus PI8},
  author={Kita, Kyosuke and Yoshida, Sanako and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={The Journal of General and Applied Microbiology},
  volume={68},
  number={2},
  pages={87--94},
  year={2022},
  publisher={Applied Microbiology, Molecular and Cellular Biosciences Research Foundation}
}

Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production. Yamamoto, J.; Chumsakul, O.; Toya, Y.; Morimoto, T.; Liu, S.; Masuda, K.; Kageyama, Y.; Hirasawa, T.; Matsuda, F.; Ogasawara, N.; and others DNA Research, 29(3): dsac015. 2022.
link bibtex

@article{yamamoto2022constitutive,
  title={Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production},
  author={Yamamoto, Junya and Chumsakul, Onuma and Toya, Yoshihiro and Morimoto, Takuya and Liu, Shenghao and Masuda, Kenta and Kageyama, Yasushi and Hirasawa, Takashi and Matsuda, Fumio and Ogasawara, Naotake and others},
  journal={DNA Research},
  volume={29},
  number={3},
  pages={dsac015},
  year={2022},
  publisher={Oxford University Press}
}

A New Tool for the Flexible Genetic Manipulation of Geobacillus kaustophilus. Amatsu, R.; Mori, K.; Ishikawa, S.; Meijer, W. J.; and Yoshida, K. Bio-protocol, 12(17): e4502–e4502. 2022.
link bibtex

@article{amatsu2022new,
  title={A New Tool for the Flexible Genetic Manipulation of Geobacillus kaustophilus},
  author={Amatsu, Ryotaro and Mori, Kotaro and Ishikawa, Shu and Meijer, Wilfried JJ and Yoshida, Ken-ichi},
  journal={Bio-protocol},
  volume={12},
  number={17},
  pages={e4502--e4502},
  year={2022}
}

Constitutive glucose dehydrogenase elevates intracellular NADPH levels and luciferase luminescence in Bacillus subtilis. Wu, Y.; Kawabata, H.; Kita, K.; Ishikawa, S.; Tanaka, K.; and Yoshida, K. Microbial Cell Factories, 21(1): 266. 2022.
link bibtex

@article{wu2022constitutive,
  title={Constitutive glucose dehydrogenase elevates intracellular NADPH levels and luciferase luminescence in Bacillus subtilis},
  author={Wu, Yuzheng and Kawabata, Honami and Kita, Kyosuke and Ishikawa, Shu and Tanaka, Kan and Yoshida, Ken-ichi},
  journal={Microbial Cell Factories},
  volume={21},
  number={1},
  pages={266},
  year={2022},
  publisher={BioMed Central London}
}

2021 (4)

Identification of a repressor for the two iol operons required for inositol catabolism in Geobacillus kaustophilus. Yoshida, K.; Shirae, Y.; Nishimura, R.; Fukui, K.; and Ishikawa, S. Microbiology, 167(1): 001008. 2021.
link bibtex

@article{yoshida2021identification,
  title={Identification of a repressor for the two iol operons required for inositol catabolism in Geobacillus kaustophilus},
  author={Yoshida, Ken-ichi and Shirae, Yusuke and Nishimura, Ryo and Fukui, Kaho and Ishikawa, Shu},
  journal={Microbiology},
  volume={167},
  number={1},
  pages={001008},
  year={2021},
  publisher={Microbiology Society}
}

Genome sequences of two strains of Lactococcus lactis subsp. cremoris with the same ancestry but different capacity to produce exopolysaccharides. Gotoh, Y.; and Yoshida, K J. Gen. Appl. Microbiol.. 2021.
link bibtex

@article{gotoh2021genome,
  title={Genome sequences of two strains of Lactococcus lactis subsp. cremoris with the same ancestry but different capacity to produce exopolysaccharides},
  author={Gotoh, Y., Kita, K., Tanaka, K., Ishikawa, S., Suzuki, T., and Yoshida, K},
  journal={J. Gen. Appl. Microbiol.},
  year={2021}
}

Identification of genes encoding a novel ABC transporter in Lactobacillus delbrueckii for inulin polymers uptake. Tsujikawa, Y.; Ishikawa, S.; Sakane, I.; Yoshida, K.; and Osawa, R. Scientific Reports, 11(1): 16007. 2021.
link bibtex

@article{tsujikawa2021identification,
  title={Identification of genes encoding a novel ABC transporter in Lactobacillus delbrueckii for inulin polymers uptake},
  author={Tsujikawa, Yuji and Ishikawa, Shu and Sakane, Iwao and Yoshida, Ken-ichi and Osawa, Ro},
  journal={Scientific Reports},
  volume={11},
  number={1},
  pages={16007},
  year={2021},
  publisher={Nature Publishing Group UK London}
}

Assessment of Bacillus subtilis plasmid pLS20 conjugation in the absence of quorum sensing repression. Mori, K.; Verrone, V.; Amatsu, R.; Fukui, K.; Meijer, W. J.; Ishikawa, S.; Wipat, A.; and Yoshida, K. Microorganisms, 9(9): 1931. 2021.
link bibtex

@article{mori2021assessment,
  title={Assessment of Bacillus subtilis plasmid pLS20 conjugation in the absence of quorum sensing repression},
  author={Mori, Kotaro and Verrone, Valeria and Amatsu, Ryotaro and Fukui, Kaho and Meijer, Wilfried JJ and Ishikawa, Shu and Wipat, Anil and Yoshida, Ken-ichi},
  journal={Microorganisms},
  volume={9},
  number={9},
  pages={1931},
  year={2021},
  publisher={MDPI}
}

2020 (4)

A bacterial cell factory converting glucose into scyllo-inositol, a therapeutic agent for Alzheimer’s disease. Michon, C.; Kang, C.; Karpenko, S.; Tanaka, K.; Ishikawa, S.; and Yoshida, K. Communications Biology, 3(1): 93. 2020.
link bibtex

@article{michon2020bacterial,
  title={A bacterial cell factory converting glucose into scyllo-inositol, a therapeutic agent for Alzheimer’s disease},
  author={Michon, Christophe and Kang, Choong-Min and Karpenko, Sophia and Tanaka, Kosei and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={Communications Biology},
  volume={3},
  number={1},
  pages={93},
  year={2020},
  publisher={Nature Publishing Group UK London}
}

Complete genome sequence of thermophilic bacterium Aeribacillus pallidus PI8. Kita, K.; Ishida, A.; Tanaka, K.; Ishikawa, S.; and Yoshida, K. Microbiology resource announcements, 9(17): 10–1128. 2020.
link bibtex

@article{kita2020complete,
  title={Complete genome sequence of thermophilic bacterium Aeribacillus pallidus PI8},
  author={Kita, Kyosuke and Ishida, Atsushi and Tanaka, Kosei and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={Microbiology resource announcements},
  volume={9},
  number={17},
  pages={10--1128},
  year={2020},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

Complete Genome Sequence of Nitrogen-Fixing Paenibacillus sp. Strain URB8-2, Isolated from the Rhizosphere of Wild Grass. Kita, K.; Ishikawa, S.; and Yoshida, K. Microbiology Resource Announcements, 9(36): 10–1128. 2020.
link bibtex

@article{kita2020complete,
  title={Complete Genome Sequence of Nitrogen-Fixing Paenibacillus sp. Strain URB8-2, Isolated from the Rhizosphere of Wild Grass},
  author={Kita, Kyosuke and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={Microbiology Resource Announcements},
  volume={9},
  number={36},
  pages={10--1128},
  year={2020},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

Complete genome sequence of nitrogen-fixing Paenibacillus sp. strain URB8-2, isolated from the rhizosphere of wild grass. Microbiol Resour Announc 9: e00814-20. Kita, K; Ishikawa, S; and Yoshida, K. 2020.
link bibtex

@misc{kita2020complete,
  title={Complete genome sequence of nitrogen-fixing Paenibacillus sp. strain URB8-2, isolated from the rhizosphere of wild grass. Microbiol Resour Announc 9: e00814-20},
  author={Kita, K and Ishikawa, S and Yoshida, KI},
  year={2020}
}

2019 (1)

Production of scyllo-Inositol: conversion of rice bran into a promising disease-modifying therapeutic agent for Alzheimer’s disease. Yoshida, K.; and Ishikawa, S. Journal of nutritional science and vitaminology, 65(Supplement): S139–S142. 2019.
link bibtex

@article{yoshida2019production,
  title={Production of scyllo-Inositol: conversion of rice bran into a promising disease-modifying therapeutic agent for Alzheimer’s disease},
  author={Yoshida, Ken-ichi and Ishikawa, Shu},
  journal={Journal of nutritional science and vitaminology},
  volume={65},
  number={Supplement},
  pages={S139--S142},
  year={2019},
  publisher={Center for Academic Publications Japan}
}

2018 (4)

Rapid conjugative mobilization of a 100 kb segment of Bacillus subtilis chromosomal DNA is mediated by a helper plasmid with no ability for self-transfer. Miyano, M.; Tanaka, K.; Ishikawa, S.; Takenaka, S.; Miguel-Arribas, A.; Meijer, W. J.; and Yoshida, K. Microbial cell factories, 17(1): 13. 2018.
link bibtex

@article{miyano2018rapid,
  title={Rapid conjugative mobilization of a 100 kb segment of Bacillus subtilis chromosomal DNA is mediated by a helper plasmid with no ability for self-transfer},
  author={Miyano, Megumi and Tanaka, Kosei and Ishikawa, Shu and Takenaka, Shinji and Miguel-Arribas, Andr{\'e}s and Meijer, Wilfried JJ and Yoshida, Ken-ichi},
  journal={Microbial cell factories},
  volume={17},
  number={1},
  pages={13},
  year={2018},
  publisher={BioMed Central London}
}

A novel method for transforming the thermophilic bacterium Geobacillus kaustophilus. Miyano, M.; Tanaka, K.; Ishikawa, S.; Mori, K.; Miguel-Arribas, A.; Meijer, W. J.; and Yoshida, K. Microbial Cell Factories, 17(1): 127. 2018.
link bibtex

@article{miyano2018novel,
  title={A novel method for transforming the thermophilic bacterium Geobacillus kaustophilus},
  author={Miyano, Megumi and Tanaka, Kosei and Ishikawa, Shu and Mori, Kotaro and Miguel-Arribas, Andres and Meijer, Wilfried JJ and Yoshida, Ken-ichi},
  journal={Microbial Cell Factories},
  volume={17},
  number={1},
  pages={127},
  year={2018},
  publisher={BioMed Central London}
}

GeF-seq: A simple procedure for base pair resolution ChIP-seq. Chumsakul, O.; Nakamura, K.; Ishikawa, S.; and Oshima, T. In Bacterial Chromatin: Methods and Protocols, pages 33–47. Springer New York New York, NY, 2018.
link bibtex

@incollection{chumsakul2018gef,
  title={GeF-seq: A simple procedure for base pair resolution ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Ishikawa, Shu and Oshima, Taku},
  booktitle={Bacterial Chromatin: Methods and Protocols},
  pages={33--47},
  year={2018},
  publisher={Springer New York New York, NY}
}

Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation. Nishihata, S.; Kondo, T.; Tanaka, K.; Ishikawa, S.; Takenaka, S.; Kang, C.; and Yoshida, K. BMC microbiology, 18(1): 156. 2018.
link bibtex

@article{nishihata2018bradyrhizobium,
  title={Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation},
  author={Nishihata, Shogo and Kondo, Takahiko and Tanaka, Kosei and Ishikawa, Shu and Takenaka, Shinji and Kang, Choong-Min and Yoshida, Ken-ichi},
  journal={BMC microbiology},
  volume={18},
  number={1},
  pages={156},
  year={2018},
  publisher={BioMed Central London}
}

2017 (5)

Bacillus subtilis iolU encodes an additional NADP+-dependent scyllo-inositol dehydrogenase. Kang, D.; Tanaka, K.; Takenaka, S.; Ishikawa, S.; and Yoshida, K. Bioscience, Biotechnology, and Biochemistry, 81(5): 1026–1032. 2017.
link bibtex

@article{kang2017bacillus,
  title={Bacillus subtilis iolU encodes an additional NADP+-dependent scyllo-inositol dehydrogenase},
  author={Kang, Dong-Min and Tanaka, Kosei and Takenaka, Shinji and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={Bioscience, Biotechnology, and Biochemistry},
  volume={81},
  number={5},
  pages={1026--1032},
  year={2017},
  publisher={Oxford University Press}
}

A new-generation of Bacillus subtilis cell factory for further elevated scyllo-inositol production. Tanaka, K.; Natsume, A.; Ishikawa, S.; Takenaka, S.; and Yoshida, K. Microbial cell factories, 16(1): 67. 2017.
link bibtex

@article{tanaka2017new,
  title={A new-generation of Bacillus subtilis cell factory for further elevated scyllo-inositol production},
  author={Tanaka, Kosei and Natsume, Ayane and Ishikawa, Shu and Takenaka, Shinji and Yoshida, Ken-ichi},
  journal={Microbial cell factories},
  volume={16},
  number={1},
  pages={67},
  year={2017},
  publisher={BioMed Central London}
}

Genome-wide analysis of ResD, NsrR, and Fur binding in Bacillus subtilis during anaerobic fermentative growth by in vivo footprinting. Chumsakul, O.; Anantsri, D. P; Quirke, T.; Oshima, T.; Nakamura, K.; Ishikawa, S.; and Nakano, M. M Journal of bacteriology, 199(13): 10–1128. 2017.
link bibtex

@article{chumsakul2017genome,
  title={Genome-wide analysis of ResD, NsrR, and Fur binding in Bacillus subtilis during anaerobic fermentative growth by in vivo footprinting},
  author={Chumsakul, Onuma and Anantsri, Divya P and Quirke, Tai and Oshima, Taku and Nakamura, Kensuke and Ishikawa, Shu and Nakano, Michiko M},
  journal={Journal of bacteriology},
  volume={199},
  number={13},
  pages={10--1128},
  year={2017},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

Bacillus subtilis IolQ (DegA) is a transcriptional repressor of iolX encoding NAD+-dependent scyllo-inositol dehydrogenase. Kang, D.; Michon, C.; Morinaga, T.; Tanaka, K.; Takenaka, S.; Ishikawa, S.; and Yoshida, K. BMC microbiology, 17(1): 154. 2017.
link bibtex

@article{kang2017bacillus,
  title={Bacillus subtilis IolQ (DegA) is a transcriptional repressor of iolX encoding NAD+-dependent scyllo-inositol dehydrogenase},
  author={Kang, Dong-Min and Michon, Christophe and Morinaga, Tetsuro and Tanaka, Kosei and Takenaka, Shinji and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={BMC microbiology},
  volume={17},
  number={1},
  pages={154},
  year={2017},
  publisher={BioMed Central London}
}

Bacillus subtilis cell factory converting phytic acid into scyllo-inositol, a therapeutic agent for Alzheimer's disease. Yoshida, K.; Tanaka, K.; and Ishikawa, S. . 2017.
link bibtex

@article{yoshida2017bacillus,
  title={Bacillus subtilis cell factory converting phytic acid into scyllo-inositol, a therapeutic agent for Alzheimer's disease},
  author={Yoshida, Ken-ichi and Tanaka,  Kosei and Ishikawa, Shu},
  year={2017}
}

2016 (3)

H-NS facilitates sequence diversification of horizontally transferred DNAs during their integration in host chromosomes. Higashi, K.; Tobe, T.; Kanai, A.; Uyar, E.; Ishikawa, S.; Suzuki, Y.; Ogasawara, N.; Kurokawa, K.; and Oshima, T. PLoS Genetics, 12(1): e1005796. 2016.
link bibtex

@article{higashi2016h,
  title={H-NS facilitates sequence diversification of horizontally transferred DNAs during their integration in host chromosomes},
  author={Higashi, Koichi and Tobe, Toru and Kanai, Akinori and Uyar, Ebru and Ishikawa, Shu and Suzuki, Yutaka and Ogasawara, Naotake and Kurokawa, Ken and Oshima, Taku},
  journal={PLoS Genetics},
  volume={12},
  number={1},
  pages={e1005796},
  year={2016},
  publisher={Public Library of Science San Francisco, CA USA}
}

Bacillus subtilis 5′-nucleotidases with various functions and substrate specificities. Terakawa, A.; Natsume, A.; Okada, A.; Nishihata, S.; Kuse, J.; Tanaka, K.; Takenaka, S.; Ishikawa, S.; and Yoshida, K. BMC microbiology, 16(1): 249. 2016.
link bibtex

@article{terakawa2016bacillus,
  title={Bacillus subtilis 5′-nucleotidases with various functions and substrate specificities},
  author={Terakawa, Ayako and Natsume, Ayane and Okada, Atsushi and Nishihata, Shogo and Kuse, Junko and Tanaka, Kosei and Takenaka, Shinji and Ishikawa, Shu and Yoshida, Ken-ichi},
  journal={BMC microbiology},
  volume={16},
  number={1},
  pages={249},
  year={2016},
  publisher={BioMed Central London}
}

Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli. Akiyama, M. T.; Oshima, T.; Chumsakul, O.; Ishikawa, S.; and Maki, H. Genes to Cells, 21(8): 907–914. 2016.
link bibtex

@article{akiyama2016replication,
  title={Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli},
  author={Akiyama, Masahiro Tatsumi and Oshima, Taku and Chumsakul, Onuma and Ishikawa, Shu and Maki, Hisaji},
  journal={Genes to Cells},
  volume={21},
  number={8},
  pages={907--914},
  year={2016}
}

2015 (5)

Cloning and heterologous expression of the ftfCNC-2 (1) gene from Weissella confusa MBFCNC-2 (1) as an extracellular active fructansucrase in Bacillus subtilis. Malik, A.; Hapsari, M. T.; Ohtsu, I.; Ishikawa, S.; and Takagi, H. Journal of bioscience and bioengineering, 119(5): 515–520. 2015.
link bibtex

@article{malik2015cloning,
  title={Cloning and heterologous expression of the ftfCNC-2 (1) gene from Weissella confusa MBFCNC-2 (1) as an extracellular active fructansucrase in Bacillus subtilis},
  author={Malik, Amarila and Hapsari, Maria Tyas and Ohtsu, Iwao and Ishikawa, Shu and Takagi, Hiroshi},
  journal={Journal of bioscience and bioengineering},
  volume={119},
  number={5},
  pages={515--520},
  year={2015},
  publisher={Elsevier}
}

Hyperphosphorylation of DegU cancels CcpA-dependent catabolite repression of rocG in Bacillus subtilis. Tanaka, K.; Iwasaki, K.; Morimoto, T.; Matsuse, T.; Hasunuma, T.; Takenaka, S.; Chumsakul, O.; Ishikawa, S.; Ogasawara, N.; and Yoshida, K. BMC microbiology, 15(1): 43. 2015.
link bibtex

@article{tanaka2015hyperphosphorylation,
  title={Hyperphosphorylation of DegU cancels CcpA-dependent catabolite repression of rocG in Bacillus subtilis},
  author={Tanaka, Kosei and Iwasaki, Kana and Morimoto, Takuya and Matsuse, Takatsugu and Hasunuma, Tomohisa and Takenaka, Shinji and Chumsakul, Onuma and Ishikawa, Shu and Ogasawara, Naotake and Yoshida, Ken-ichi},
  journal={BMC microbiology},
  volume={15},
  number={1},
  pages={43},
  year={2015},
  publisher={BioMed Central London}
}

Enhanced dipicolinic acid production during the stationary phase in Bacillus subtilis by blocking acetoin synthesis. Toya, Y.; Hirasawa, T.; Ishikawa, S.; Chumsakul, O.; Morimoto, T.; Liu, S.; Masuda, K.; Kageyama, Y.; Ozaki, K.; Ogasawara, N.; and others Bioscience, biotechnology, and biochemistry, 79(12): 2073–2080. 2015.
link bibtex

@article{toya2015enhanced,
  title={Enhanced dipicolinic acid production during the stationary phase in Bacillus subtilis by blocking acetoin synthesis},
  author={Toya, Yoshihiro and Hirasawa, Takashi and Ishikawa, Shu and Chumsakul, Onuma and Morimoto, Takuya and Liu, Shenghao and Masuda, Kenta and Kageyama, Yasushi and Ozaki, Katsuya and Ogasawara, Naotake and others},
  journal={Bioscience, biotechnology, and biochemistry},
  volume={79},
  number={12},
  pages={2073--2080},
  year={2015},
  publisher={Oxford University Press}
}

The role of $α$-CTD in the genome-wide transcriptional regulation of the Bacillus subtilis cells. Murayama, S.; Ishikawa, S.; Chumsakul, O.; Ogasawara, N.; and Oshima, T. PloS one, 10(7): e0131588. 2015.
link bibtex

@article{murayama2015role,
  title={The role of $\alpha$-CTD in the genome-wide transcriptional regulation of the Bacillus subtilis cells},
  author={Murayama, Satohiko and Ishikawa, Shu and Chumsakul, Onuma and Ogasawara, Naotake and Oshima, Taku},
  journal={PloS one},
  volume={10},
  number={7},
  pages={e0131588},
  year={2015},
  publisher={Public Library of Science San Francisco, CA USA}
}

Hygiene management in food factory and human resource development (6): basics and application of sterilization by washing. Tsurumi, M; and Ishikawa, S . 2015.
link bibtex

@article{tsurumi2015hygiene,
  title={Hygiene management in food factory and human resource development (6): basics and application of sterilization by washing.},
  author={Tsurumi, M and Ishikawa, S},
  year={2015}
}

2014 (1)

The ResD response regulator, through functional interaction with NsrR and fur, plays three distinct roles in Bacillus subtilis transcriptional control. Henares, B.; Kommineni, S.; Chumsakul, O.; Ogasawara, N.; Ishikawa, S.; and Nakano, M. M Journal of bacteriology, 196(2): 493–503. 2014.
link bibtex

@article{henares2014resd,
  title={The ResD response regulator, through functional interaction with NsrR and fur, plays three distinct roles in Bacillus subtilis transcriptional control},
  author={Henares, Bernadette and Kommineni, Sushma and Chumsakul, Onuma and Ogasawara, Naotake and Ishikawa, Shu and Nakano, Michiko M},
  journal={Journal of bacteriology},
  volume={196},
  number={2},
  pages={493--503},
  year={2014},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

2013 (5)

Functions of the Hha and YdgT proteins in transcriptional silencing by the nucleoid proteins, H-NS and StpA, in Escherichia coli. Ueda, T.; Takahashi, H.; Uyar, E.; Ishikawa, S.; Ogasawara, N.; and Oshima, T. DNA research, 20(3): 263–271. 2013.
link bibtex

@article{ueda2013functions,
  title={Functions of the Hha and YdgT proteins in transcriptional silencing by the nucleoid proteins, H-NS and StpA, in Escherichia coli},
  author={Ueda, Takeshi and Takahashi, Hiroki and Uyar, EBRU and Ishikawa, SHU and Ogasawara, Naotake and Oshima, TAKU},
  journal={DNA research},
  volume={20},
  number={3},
  pages={263--271},
  year={2013},
  publisher={Oxford University Press}
}

Structural and genetic analyses reveal the protein SepF as a new membrane anchor for the Z ring. Duman, R.; Ishikawa, S.; Celik, I.; Strahl, H.; Ogasawara, N.; Troc, P.; Löwe, J.; and Hamoen, L. W Proceedings of the National Academy of Sciences, 110(48): E4601–E4610. 2013.
link bibtex

@article{duman2013structural,
  title={Structural and genetic analyses reveal the protein SepF as a new membrane anchor for the Z ring},
  author={Duman, Ramona and Ishikawa, Shu and Celik, Ilkay and Strahl, Henrik and Ogasawara, Naotake and Troc, Paulina and L{\"o}we, Jan and Hamoen, Leendert W},
  journal={Proceedings of the National Academy of Sciences},
  volume={110},
  number={48},
  pages={E4601--E4610},
  year={2013},
  publisher={National Academy of Sciences}
}

Functional analysis of the protein Veg, which stimulates biofilm formation in Bacillus subtilis. Lei, Y.; Oshima, T.; Ogasawara, N.; and Ishikawa, S. Journal of bacteriology, 195(8): 1697–1705. 2013.
link bibtex

@article{lei2013functional,
  title={Functional analysis of the protein Veg, which stimulates biofilm formation in Bacillus subtilis},
  author={Lei, Ying and Oshima, Taku and Ogasawara, Naotake and Ishikawa, Shu},
  journal={Journal of bacteriology},
  volume={195},
  number={8},
  pages={1697--1705},
  year={2013},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq. Chumsakul, O.; Nakamura, K.; Kurata, T.; Sakamoto, T.; Hobman, J. L; Ogasawara, N.; Oshima, T.; and Ishikawa, S. DNA research, 20(4): 325–338. 2013.
link bibtex

@article{chumsakul2013high,
  title={High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq},
  author={Chumsakul, Onuma and Nakamura, Kensuke and Kurata, Tetsuya and Sakamoto, Tomoaki and Hobman, Jon L and Ogasawara, Naotake and Oshima, Taku and Ishikawa, Shu},
  journal={DNA research},
  volume={20},
  number={4},
  pages={325--338},
  year={2013},
  publisher={Oxford University Press}
}

Efficient Expression of Recombinant Soluble Apoptin in Escherichia coli and Bacillus subtilis. IK, S. M S.; Prasetyo, A.; Onuma, C; Ishikawa, S; Malik, A; and Ogasawara, N International Journal of Chemical, Environmental & Biological Sciences, 1(1): 2320–4087. 2013.
link bibtex

@article{ik2013efficient,
  title={Efficient Expression of Recombinant Soluble Apoptin in Escherichia coli and Bacillus subtilis},
  author={IK, Sahlan M Savitri and Prasetyo, AA and Onuma, C and Ishikawa, S and Malik, A and Ogasawara, N},
  journal={International Journal of Chemical, Environmental \& Biological Sciences},
  volume={1},
  number={1},
  pages={2320--4087},
  year={2013}
}

2012 (1)

Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis. Okumura, H.; Yoshimura, M.; Ueki, M.; Oshima, T.; Ogasawara, N.; and Ishikawa, S. Nucleic acids research, 40(1): 220–234. 2012.
link bibtex

@article{okumura2012regulation,
  title={Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis},
  author={Okumura, Hajime and Yoshimura, Mika and Ueki, Mikako and Oshima, Taku and Ogasawara, Naotake and Ishikawa, Shu},
  journal={Nucleic acids research},
  volume={40},
  number={1},
  pages={220--234},
  year={2012},
  publisher={Oxford University Press}
}

2011 (5)

Sequence-specific error profile of Illumina sequencers. Nakamura, K.; Oshima, T.; Morimoto, T.; Ikeda, S.; Yoshikawa, H.; Shiwa, Y.; Ishikawa, S.; Linak, M. C; Hirai, A.; Takahashi, H.; and others Nucleic acids research, 39(13): e90–e90. 2011.
link bibtex

@article{nakamura2011sequence,
  title={Sequence-specific error profile of Illumina sequencers},
  author={Nakamura, Kensuke and Oshima, Taku and Morimoto, Takuya and Ikeda, Shun and Yoshikawa, Hirofumi and Shiwa, Yuh and Ishikawa, Shu and Linak, Margaret C and Hirai, Aki and Takahashi, Hiroki and others},
  journal={Nucleic acids research},
  volume={39},
  number={13},
  pages={e90--e90},
  year={2011},
  publisher={Oxford University Press}
}

A widespread family of bacterial cell wall assembly proteins. Kawai, Y.; Marles-Wright, J.; Cleverley, R. M; Emmins, R.; Ishikawa, S.; Kuwano, M.; Heinz, N.; Bui, N. K.; Hoyland, C. N; Ogasawara, N.; and others The EMBO journal, 30(24): 4931–4941. 2011.
link bibtex

@article{kawai2011widespread,
  title={A widespread family of bacterial cell wall assembly proteins},
  author={Kawai, Yoshikazu and Marles-Wright, Jon and Cleverley, Robert M and Emmins, Robyn and Ishikawa, Shu and Kuwano, Masayoshi and Heinz, Nadja and Bui, Nhat Khai and Hoyland, Christopher N and Ogasawara, Naotake and others},
  journal={The EMBO journal},
  volume={30},
  number={24},
  pages={4931--4941},
  year={2011},
  publisher={John Wiley \& Sons, Ltd Chichester, UK}
}

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Chumsakul, O.; Takahashi, H.; Oshima, T.; Hishimoto, T.; Kanaya, S.; Ogasawara, N.; and Ishikawa, S. Nucleic acids research, 39(2): 414–428. 2011.
link bibtex

@article{chumsakul2011genome,
  title={Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation},
  author={Chumsakul, Onuma and Takahashi, Hiroki and Oshima, Taku and Hishimoto, Takahiro and Kanaya, Shigehiko and Ogasawara, Naotake and Ishikawa, Shu},
  journal={Nucleic acids research},
  volume={39},
  number={2},
  pages={414--428},
  year={2011},
  publisher={Oxford University Press}
}

Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells. Kusuya, Y.; Kurokawa, K.; Ishikawa, S.; Ogasawara, N.; and Oshima, T. Journal of bacteriology, 193(12): 3090–3099. 2011.
link bibtex

@article{kusuya2011transcription,
  title={Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells},
  author={Kusuya, Yoko and Kurokawa, Ken and Ishikawa, Shu and Ogasawara, Naotake and Oshima, Taku},
  journal={Journal of bacteriology},
  volume={193},
  number={12},
  pages={3090--3099},
  year={2011},
  publisher={American Society for Microbiology 1752 N St., NW, Washington, DC}
}

Screening for sucrose phosphorylase in exopolysaccharide producing-lactic acid bacteria reveals SPaseWRS-3 (1) in Leuconostoc mesenteroides isolated from sugar containing- beverage" Wedang Ronde" from Indonesia. Malik, A.; Ishikawa, S.; Sahlan, M.; Ogasawara, N.; Nguyen, U. Q.; and Suryadi, H. African Journal of Biotechnology, 10(74): 16915–16923. 2011.
link bibtex

@article{malik2011screening,
  title={Screening for sucrose phosphorylase in exopolysaccharide producing-lactic acid bacteria reveals SPaseWRS-3 (1) in Leuconostoc mesenteroides isolated from sugar containing- beverage" Wedang Ronde" from Indonesia},
  author={Malik, Amarila and Ishikawa, Shu and Sahlan, Muhamad and Ogasawara, Naotake and Nguyen, Uyen Quynh and Suryadi, Herman},
  journal={African Journal of Biotechnology},
  volume={10},
  number={74},
  pages={16915--16923},
  year={2011}
}

2010 (1)

RNA polymerase trafficking in Bacillus subtilis cells. Ishikawa, S.; Oshima, T.; Kurokawa, K.; Kusuya, Y.; and Ogasawara, N. Journal of bacteriology, 192(21): 5778–5787. 2010.
link bibtex

@article{ishikawa2010rna,
  title={RNA polymerase trafficking in Bacillus subtilis cells},
  author={Ishikawa, Shu and Oshima, Taku and Kurokawa, Ken and Kusuya, Yoko and Ogasawara, Naotake},
  journal={Journal of bacteriology},
  volume={192},
  number={21},
  pages={5778--5787},
  year={2010},
  publisher={American Society for Microbiology}
}

2009 (2)

Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation. Wu, L. J.; Ishikawa, S.; Kawai, Y.; Oshima, T.; Ogasawara, N.; and Errington, J. The EMBO journal, 28(13): 1940–1952. 2009.
link bibtex

@article{wu2009noc,
  title={Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation},
  author={Wu, Ling Juan and Ishikawa, Shu and Kawai, Yoshikazu and Oshima, Taku and Ogasawara, Naotake and Errington, Jeff},
  journal={The EMBO journal},
  volume={28},
  number={13},
  pages={1940--1952},
  year={2009},
  publisher={John Wiley \& Sons, Ltd}
}

Differential binding profiles of StpA in wild-type and hns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis. Uyar, E.; Kurokawa, K.; Yoshimura, M.; Ishikawa, S.; Ogasawara, N.; and Oshima, T. Journal of bacteriology, 191(7): 2388–2391. 2009.
link bibtex

@article{uyar2009differential,
  title={Differential binding profiles of StpA in wild-type and hns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis},
  author={Uyar, Ebru and Kurokawa, Ken and Yoshimura, Mika and Ishikawa, Shu and Ogasawara, Naotake and Oshima, Taku},
  journal={Journal of bacteriology},
  volume={191},
  number={7},
  pages={2388--2391},
  year={2009},
  publisher={American Society for Microbiology}
}

2008 (2)

The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils. Cho, E.; Ogasawara, N.; and Ishikawa, S. Genes & genetic systems, 83(2): 111–125. 2008.
link bibtex

@article{cho2008functional,
  title={The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils},
  author={Cho, Eunha and Ogasawara, Naotake and Ishikawa, Shu},
  journal={Genes \& genetic systems},
  volume={83},
  number={2},
  pages={111--125},
  year={2008},
  publisher={The Genetics Society of Japan}
}

Molecular mechanism of bacterial cell division. Ishikawa, S.; and Ogasawara, N. Tanpakushitsu Kakusan koso. Protein, Nucleic Acid, Enzyme, 53(13): 1725–1731. 2008.
link bibtex

@article{ishikawa2008molecular,
  title={Molecular mechanism of bacterial cell division},
  author={Ishikawa, Shu and Ogasawara, Naotake},
  journal={Tanpakushitsu Kakusan koso. Protein, Nucleic Acid, Enzyme},
  volume={53},
  number={13},
  pages={1725--1731},
  year={2008}
}

2007 (2)

Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. Ishikawa, S.; Ogura, Y.; Yoshimura, M.; Okumura, H.; Cho, E.; Kawai, Y.; Kurokawa, K.; Oshima, T.; and Ogasawara, N. DNA research, 14(4): 155–168. 2007.
link bibtex

@article{ishikawa2007distribution,
  title={Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method},
  author={Ishikawa, Shu and Ogura, Yoshitoshi and Yoshimura, Mika and Okumura, Hajime and Cho, Eunha and Kawai, Yoshikazu and Kurokawa, Ken and Oshima, Taku and Ogasawara, Naotake},
  journal={DNA research},
  volume={14},
  number={4},
  pages={155--168},
  year={2007},
  publisher={Kazusa DNA Resh Ins}
}

Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan. An, S.; Ishikawa, S.; Kasai, H.; Goto, K.; and Yokota, A. International journal of systematic and evolutionary microbiology, 57(11): 2489–2492. 2007.
link bibtex

@article{an2007amphibacillus,
  title={Amphibacillus sediminis sp. nov., an endospore-forming bacterium isolated from lake sediment in Japan},
  author={An, Sun-Young and Ishikawa, Shu and Kasai, Hiroaki and Goto, Keiichi and Yokota, Akira},
  journal={International journal of systematic and evolutionary microbiology},
  volume={57},
  number={11},
  pages={2489--2492},
  year={2007},
  publisher={Society for General Microbiology}
}

2006 (2)

Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. Oshima, T.; Ishikawa, S.; Kurokawa, K.; Aiba, H.; and Ogasawara, N. DNA research, 13(4): 141–153. 2006.
link bibtex

@article{oshima2006escherichia,
  title={Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase},
  author={Oshima, Taku and Ishikawa, Shu and Kurokawa, Ken and Aiba, Hirofumi and Ogasawara, Naotake},
  journal={DNA research},
  volume={13},
  number={4},
  pages={141--153},
  year={2006},
  publisher={Oxford University Press}
}

A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis. Ishikawa, S.; Kawai, Y.; Hiramatsu, K.; Kuwano, M.; and Ogasawara, N. Molecular microbiology, 60(6): 1364–1380. 2006.
link bibtex

@article{ishikawa2006new,
  title={A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis},
  author={Ishikawa, Shu and Kawai, Yoshikazu and Hiramatsu, Konosuke and Kuwano, Masayoshi and Ogasawara, Naotake},
  journal={Molecular microbiology},
  volume={60},
  number={6},
  pages={1364--1380},
  year={2006},
  publisher={Blackwell Publishing Ltd Oxford, UK}
}

2005 (1)

Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems. Bongiorni, C.; Ishikawa, S.; Stephenson, S.; Ogasawara, N.; and Perego, M. Journal of bacteriology, 187(13): 4353–4361. 2005.
link bibtex

@article{bongiorni2005synergistic,
  title={Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems},
  author={Bongiorni, Cristina and Ishikawa, Shu and Stephenson, Sophie and Ogasawara, Naotake and Perego, Marta},
  journal={Journal of bacteriology},
  volume={187},
  number={13},
  pages={4353--4361},
  year={2005},
  publisher={American Society for Microbiology}
}

2003 (1)

Transcriptional, functional and cytochemical analyses of the veg gene in Bacillus subtilis. Fukushima, T.; Ishikawa, S.; Yamamoto, H.; Ogasawara, N.; and Sekiguchi, J. Journal of biochemistry, 133(4): 475–483. 2003.
link bibtex

@article{fukushima2003transcriptional,
  title={Transcriptional, functional and cytochemical analyses of the veg gene in Bacillus subtilis},
  author={Fukushima, Tatsuya and Ishikawa, Shu and Yamamoto, Hiroki and Ogasawara, Naotake and Sekiguchi, Junichi},
  journal={Journal of biochemistry},
  volume={133},
  number={4},
  pages={475--483},
  year={2003},
  publisher={Jpn Biochemical Soc}
}

2002 (2)

Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptide. Ishikawa, S.; Core, L.; and Perego, M. Journal of Biological Chemistry, 277(23): 20483–20489. 2002.
link bibtex

@article{ishikawa2002biochemical,
  title={Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptide},
  author={Ishikawa, Shu and Core, Leighton and Perego, Marta},
  journal={Journal of Biological Chemistry},
  volume={277},
  number={23},
  pages={20483--20489},
  year={2002},
  publisher={Elsevier}
}

Production of long-chain levan by a sacC insertional mutant from Bacillus subtilis 327UH. Shida, T.; Mukaijo, K.; Ishikawa, S.; Yamamoto, H.; and Sekiguchi, J. Bioscience, biotechnology, and biochemistry, 66(7): 1555–1558. 2002.
link bibtex

@article{shida2002production,
  title={Production of long-chain levan by a sacC insertional mutant from Bacillus subtilis 327UH},
  author={Shida, Toshio and Mukaijo, Kohsuke and Ishikawa, Shu and Yamamoto, Hiroki and Sekiguchi, Junichi},
  journal={Bioscience, biotechnology, and biochemistry},
  volume={66},
  number={7},
  pages={1555--1558},
  year={2002},
  publisher={Japan Society for Bioscience, Biotechnology, and Agrochemistry}
}

2001 (1)

A free terminal carboxylate group is required for PhrA pentapeptide inhibition of RapA phosphatase. Core, L. J; Ishikawa, S.; and Perego, M. Peptides, 22(10): 1549–1553. 2001.
link bibtex

@article{core2001free,
  title={A free terminal carboxylate group is required for PhrA pentapeptide inhibition of RapA phosphatase},
  author={Core, Leighton J and Ishikawa, Shu and Perego, Marta},
  journal={Peptides},
  volume={22},
  number={10},
  pages={1549--1553},
  year={2001},
  publisher={Elsevier}
}

1999 (3)

Peptidoglycan hydrolase LytF plays a role in cell separation with CwlF during vegetative growth of Bacillus subtilis. Ohnishi, R.; Ishikawa, S.; and Sekiguchi, J. Journal of bacteriology, 181(10): 3178–3184. 1999.
link bibtex

@article{ohnishi1999peptidoglycan,
  title={Peptidoglycan hydrolase LytF plays a role in cell separation with CwlF during vegetative growth of Bacillus subtilis},
  author={Ohnishi, Ryo and Ishikawa, Shu and Sekiguchi, Junichi},
  journal={Journal of bacteriology},
  volume={181},
  number={10},
  pages={3178--3184},
  year={1999},
  publisher={American Society for Microbiology}
}

Cloning and expression of two autolysin genes, cwlU and cwlV, which are tandemly arranged on the chromosome of Bacillus polymyxa var. colistinus. Ishikawa, S; Kawahara, S; and Sekiguchi, J Molecular and General Genetics MGG, 262(4): 738–748. 1999.
link bibtex

@article{ishikawa1999cloning,
  title={Cloning and expression of two autolysin genes, cwlU and cwlV, which are tandemly arranged on the chromosome of Bacillus polymyxa var. colistinus},
  author={Ishikawa, S and Kawahara, S and Sekiguchi, J},
  journal={Molecular and General Genetics MGG},
  volume={262},
  number={4},
  pages={738--748},
  year={1999},
  publisher={Springer-Verlag Berlin/Heidelberg}
}

Formation, structure and germination of the spore of Bacillus subtilis. Sekiguchi, J; Sato, T; Nanamiya, H; Ohashi, Y; Kawamura, F; Takamatsu, H; Kodama, T; Watabe, K; and Ishikawa, S Tanpakushitsu Kakusan koso. Protein, Nucleic Acid, Enzyme, 44(10): 1460–1466. 1999.
link bibtex

@article{sekiguchi1999formation,
  title={Formation, structure and germination of the spore of Bacillus subtilis},
  author={Sekiguchi, J and Sato, T and Nanamiya, H and Ohashi, Y and Kawamura, F and Takamatsu, H and Kodama, T and Watabe, K and Ishikawa, S},
  journal={Tanpakushitsu Kakusan koso. Protein, Nucleic Acid, Enzyme},
  volume={44},
  number={10},
  pages={1460--1466},
  year={1999}
}

1998 (2)

Regulation and characterization of a newly deduced cell wall hydrolase gene (cwlJ) which affects germination of Bacillus subtilis spores. Ishikawa, S.; Yamane, K.; and Sekiguchi, J. Journal of Bacteriology, 180(6): 1375–1380. 1998.
link bibtex

@article{ishikawa1998regulation,
  title={Regulation and characterization of a newly deduced cell wall hydrolase gene (cwlJ) which affects germination of Bacillus subtilis spores},
  author={Ishikawa, Shu and Yamane, Kunio and Sekiguchi, Junichi},
  journal={Journal of Bacteriology},
  volume={180},
  number={6},
  pages={1375--1380},
  year={1998},
  publisher={American Society for Microbiology}
}

Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis. Ishikawa, S.; Hara, Y.; Ohnishi, R.; and Sekiguchi, J. Journal of bacteriology, 180(9): 2549–2555. 1998.
link bibtex

@article{ishikawa1998regulation,
  title={Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis},
  author={Ishikawa, Shu and Hara, Yoshiko and Ohnishi, Ryo and Sekiguchi, Junichi},
  journal={Journal of bacteriology},
  volume={180},
  number={9},
  pages={2549--2555},
  year={1998},
  publisher={American Society for Microbiology}
}

1997 (1)

Purification and characterization of an autolysin of Bacillus polymyxa var. colistinus which is most active at acidic pH. Kawahara, S.; Utsunomiya, C.; Ishikawa, S.; and Sekiguchi, J. Journal of fermentation and bioengineering, 83(5): 419–422. 1997.
link bibtex

@article{kawahara1997purification,
  title={Purification and characterization of an autolysin of Bacillus polymyxa var. colistinus which is most active at acidic pH},
  author={Kawahara, Shinji and Utsunomiya, Chie and Ishikawa, Shu and Sekiguchi, Junichi},
  journal={Journal of fermentation and bioengineering},
  volume={83},
  number={5},
  pages={419--422},
  year={1997},
  publisher={Elsevier}
}

1993 (1)

Resin Composition for Composite Vibration Damping Material and Composite Vibration Damping Material Produced Therefrom. Yamamoto, H; Ishikawa, S; Taniguchi, Y; Endo, H; and Kadowaki, N Patent NumberEP 0554449. 1993.
link bibtex

@article{yamamoto1993resin,
  title={Resin Composition for Composite Vibration Damping Material and Composite Vibration Damping Material Produced Therefrom},
  author={Yamamoto, H and Ishikawa, S and Taniguchi, Y and Endo, H and Kadowaki, N},
  journal={Patent NumberEP 0554449},
  year={1993}
}

1974 (1)

DETERMINATION OF BENDING LIMIT BY FRACTURE STRESS UNDER TENSILE UNBENDING. A TRIAL FOR NEW TESTING METHOD OF BENDING. Yoshida, K; Ike, H; and Ishikawa, S . 1974.
link bibtex

@article{yoshida1974determination,
  title={DETERMINATION OF BENDING LIMIT BY FRACTURE STRESS UNDER TENSILE UNBENDING. A TRIAL FOR NEW TESTING METHOD OF BENDING},
  author={Yoshida, K and Ike, H and Ishikawa, S},
  year={1974}
}