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  2024 (1)
Detecting Paleoclimate Transitions With Laplacian Eigenmaps of Recurrence Matrices (LERM). James, A.; Emile‐Geay, J.; Malik, N.; and Khider, D. Paleoceanography and Paleoclimatology, 39(1): e2023PA004700. January 2024.
Detecting Paleoclimate Transitions With Laplacian Eigenmaps of Recurrence Matrices (LERM) [link]Paper   doi   link   bibtex   abstract  
  2023 (2)
Building Upon the EarthCube Community: a geoscience and cyberinfrastructure workshop - Report. Khider, D.; Mike Daniels; and Jarboe, N. Technical Report 2023.
Building Upon the EarthCube Community: a geoscience and cyberinfrastructure workshop - Report [link]Paper   link   bibtex   abstract  
cfr (v2023.9.14): a Python package for climate field reconstruction. Zhu, F.; Emile-Geay, J.; Hakim, G. J.; Guillot, D.; Khider, D.; Tardif, R.; and Perkins, W. A. Technical Report Climate and Earth system modeling, September 2023.
cfr (v2023.9.14): a Python package for climate field reconstruction [link]Paper   doi   link   bibtex   abstract  
  2022 (4)
An AI Approach to Integrating Climate, Hydrology, and Agriculture Models. Berhanu, B.; Bisrat, E.; Gil, Y.; Khider, D.; Osorio, M.; Ratnakar, V.; and Vargas, H. In Proceedings of the First International Workshop on Social Impact of AI for Africa (SIAIA), held at the 36th Annual Conference of the Association for the Advancement of Artificial Intelligence (AAAI-22), 2022.
An AI Approach to Integrating Climate, Hydrology, and Agriculture Models [pdf]Paper   link   bibtex   9 downloads  
Towards Capturing Scientific Reasoning to Automate Data Analysis. Gil, Y.; Khider, D.; Osorio, M.; Ratnakar, V.; Vargas, H.; Garijo, D.; and Pierce, S. In Proceedings of the 44th Annual Conference of the Cognitive Science Society (CogSci), 2022.
Towards Capturing Scientific Reasoning to Automate Data Analysis [pdf]Paper   link   bibtex   19 downloads  
Pyleoclim: Paleoclimate Timeseries Analysis and Visualization With Python. Khider, D.; Emile‐Geay, J.; Zhu, F.; James, A.; Landers, J.; Ratnakar, V.; and Gil, Y. Paleoceanography and Paleoclimatology, 37(10). October 2022.
Pyleoclim: Paleoclimate Timeseries Analysis and Visualization With Python [link]Paper   doi   link   bibtex   10 downloads  
PaleoRec: A sequential recommender system for the annotation of paleoclimate datasets. Manety, S.; Khider, D.; Heiser, C.; McKay, N.; Emile-Geay, J.; and Routson, C. Environmental Data Science, 1: e4. 2022.
PaleoRec: A sequential recommender system for the annotation of paleoclimate datasets [link]Paper   doi   link   bibtex   abstract   2 downloads  
  2021 (2)
Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making. Gil, Y.; Garijo, D.; Khider, D.; Knoblock, C. A.; Ratnakar, V.; Osorio, M.; Vargas, H.; Pham, M.; Pujara, J.; Shbita, B.; Vu, B.; Chiang, Y.; Feldman, D.; Lin, Y.; Song, H.; Kumar, V.; Khandelwal, A.; Steinbach, M.; Tayal, K.; Xu, S.; Pierce, S. A.; Pearson, L.; Hardesty-Lewis, D.; Deelman, E.; Silva, R. F. D.; Mayani, R.; Kemanian, A. R.; Shi, Y.; Leonard, L.; Peckham, S.; Stoica, M.; Cobourn, K.; Zhang, Z.; Duffy, C.; and Shu, L. ACM Transactions on Interactive Intelligent Systems, 11(2): 11:1–11:49. July 2021.
Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making [link]Paper   doi   link   bibtex   abstract   21 downloads  
geoChronR – an R package to model, analyze, and visualize age-uncertain data. McKay, N.; Emile-Geay, J.; and Khider, D. Geochronology, 3(1): 149–169. March 2021.
doi   link   bibtex   1 download  
  2020 (2)
Towards automating time series analysis for the paleogeosciences. Khider, D.; Athreya, P.; Ratnakar, V.; Gil, Y.; Zhu, F.; Kwan, M.; and Emile-Geay, J. In San Diego, California, USA, 2020. ACM, New York, NY, USA
Towards automating time series analysis for the paleogeosciences [pdf]Paper   link   bibtex   abstract   10 downloads  
A global database of Holocene paleotemperature records. Kaufman, D.; McKay, N.; Routson, C.; Erb, M.; Davis, B.; Heiri, O.; Jaccard, S.; Tierney, J.; Dätwyler, C.; Axford, Y.; Brussel, T.; Cartapanis, O.; Chase, B.; Dawson, A.; de Vernal, A.; Engels, S.; Jonkers, L.; Marsicek, J.; Moffa-Sánchez, P.; Morrill, C.; Orsi, A.; Rehfeld, K.; Saunders, K.; Sommer, P. S.; Thomas, E.; Tonello, M.; Tóth, M.; Vachula, R.; Andreev, A.; Bertrand, S.; Biskaborn, B.; Bringué, M.; Brooks, S.; Caniupán, M.; Chevalier, M.; Cwynar, L.; Emile-Geay, J.; Fegyveresi, J.; Feurdean, A.; Finsinger, W.; Fortin, M.; Foster, L.; Fox, M.; Gajewski, K.; Grosjean, M.; Hausmann, S.; Heinrichs, M.; Holmes, N.; Ilyashuk, B.; Ilyashuk, E.; Juggins, S.; Khider, D.; Koinig, K.; Langdon, P.; Larocque-Tobler, I.; Li, J.; Lotter, A.; Luoto, T.; Mackay, A.; Magyari, E.; Malevich, S.; Mark, B.; Massaferro, J.; Montade, V.; Nazarova, L.; Novenko, E.; Pařil, P.; Pearson, E.; Peros, M.; Pienitz, R.; Płóciennik, M.; Porinchu, D.; Potito, A.; Rees, A.; Reinemann, S.; Roberts, S.; Rolland, N.; Salonen, S.; Self, A.; Seppä, H.; Shala, S.; St-Jacques, J.; Stenni, B.; Syrykh, L.; Tarrats, P.; Taylor, K.; van den Bos, V.; Velle, G.; Wahl, E.; Walker, I.; Wilmshurst, J.; Zhang, E.; and Zhilich, S. Scientific Data, 7(1): 115. April 2020.
A global database of Holocene paleotemperature records [link]Paper   doi   link   bibtex   abstract   1 download  
  2019 (5)
OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata. Garijo, D.; Osorio, M.; Khider, D.; Ratnakar, V.; and Gil, Y. In To appear in Proceedings of the Fifteen IEEE International Conference on eScience, San Diego, California, USA, 2019.
OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata [pdf]Paper   link   bibtex   7 downloads  
PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data. Khider, D.; Emile-Geay, J.; McKay, N.; Gil, Y.; Garijo, D.; Ratnakar, V.; Alonso-Garcia, M.; Bertrand, S.; Bothe, O.; Brewer, P.; Bunn, A.; Chevalier, M.; Comas-Bru, L.; Csank, A.; Dassié, E.; DeLong, K.; Felis, T.; Francus, P.; Frappier, A.; Gray, W.; Goring, S.; Jonkers, L.; Kahle, M.; Kaufman, D.; Kehrwald, N.; Martrat, B.; McGregor, H.; Richey, J.; Schmittner, A.; Scroxton, N.; Sutherland, E.; Thirumalai, K.; Allen, K.; Arnaud, F.; Axford, Y.; Barrows, T.; Bazin, L.; Pilaar Birch, S.; Bradley, E.; Bregy, J.; Capron, E.; Cartapanis, O.; Chiang, H.; Cobb, K.; Debret, M.; Dommain, R.; Du, J.; Dyez, K.; Emerick, S.; Erb, M.; Falster, G.; Finsinger, W.; Fortier, D.; Gauthier, N.; George, S.; Grimm, E.; Hertzberg, J.; Hibbert, F.; Hillman, A.; Hobbs, W.; Huber, M.; Hughes, A. L.; Jaccard, S.; Ruan, J.; Kienast, M.; Konecky, B.; Le Roux, G.; Lyubchich, V.; Novello, V. F.; Olaka, L.; Partin, J.; Pearce, C.; Phipps, S.; Pignol, C.; Piotrowska, N.; Poli, M.; Prokopenko, A.; Schwanck, F.; Stepanek, C.; Swann, G.; Telford, R.; Thomas, E.; Thomas, Z.; Truebe, S.; von Gunten, L.; Waite, A.; Weitzel, N.; Wilhelm, B.; Williams, J.; Winstrup, M.; Zhao, N.; and Zhou, Y. Paleoceanography and Paleoclimatology, 34: 1570–1596. 2019.
PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data [pdf]Paper   doi   link   bibtex   abstract   12 downloads  
Considerations for Globigerinoides ruber (White and Pink) Paleoceanography: Comprehensive Insights From a Long-Running Sediment Trap. Richey, J. N.; Thirumalai, K.; Khider, D.; Reynolds, C. E.; Partin, J. W.; and Quinn, T. M. Paleoceanography and Paleoclimatology, 34(3): 353–373. 2019.
Considerations for Globigerinoides ruber (White and Pink) Paleoceanography: Comprehensive Insights From a Long-Running Sediment Trap [pdf]Paper   doi   link   bibtex   abstract  
An Intelligent Interface for Integrating Climate, Hydrology, Agriculture, and Socioeconomic Models. Garijo, D.; Khider, D.; Ratnakar, V.; Gil, Y.; Deelman, E.; da Silva, R. F.; Knoblock, C.; Chiang, Y.; Pham, M.; Pujara, J.; Vu, B.; Feldman, D.; Mayani, R.; Cobourn, K.; Duffy, C.; Kemanian, A.; Shu, L.; Kumar, V.; Khandelwal, A.; Tayal, K.; Peckham, S.; Stoica, M.; Dabrowski, A.; Hardesty-Lewis, D.; and Pierce, S. In Proceedings of the 24th International Conference on Intelligent User Interfaces: Companion, of IUI '19, pages 111–112, New York, NY, USA, 2019. ACM event-place: Marina del Ray, California
An Intelligent Interface for Integrating Climate, Hydrology, Agriculture, and Socioeconomic Models [pdf]Paper   doi   link   bibtex   2 downloads  
Climate models can correctly simulate the continuum of global-average temperature variability. Zhu, F.; Emile-Geay, J.; McKay, N. P.; Hakim, G. J.; Khider, D.; Ault, T. R.; Steig, E. J.; Dee, S.; and Kirchner, J. W. Proceedings of the National Academy of Sciences, 116(18): 8728–8733. 2019.
Climate models can correctly simulate the continuum of global-average temperature variability [pdf]Paper   doi   link   bibtex   abstract   2 downloads  
  2018 (2)
A Semantic Model Catalog to Support Comparison and Reuse. Garijo, D.; Khider, D.; Gil, Y.; Carvalho, L.; Essawy, B.; Pierce, S.; Lewis, D. H.; Ratnakar, V.; Peckham, S.; Duffy, C.; and Goodal, J. In Proceedings of the 9th International Congress on Environmental Modelling and Software, 2018.
A Semantic Model Catalog to Support Comparison and Reuse [pdf]Paper   link   bibtex  
MINT: Model Integration Through Knowledge-Powered Data and Process Composition. Gil, Y.; Cobourn, K.; Deelman, E.; Duffy, C.; Silva, R. F. d.; Kemanian, A.; Knoblock, C.; Kumar, V.; Peckham, S.; Carvalho, L.; Chiang, Y.; Garijo, D.; Khider, D.; Khandelwal, A.; Pahm, M.; Pujara, J.; Ratnakar, V.; Stoica, M.; and Vu, B. In Proceedings of the 9th International Congress on Environmental Modelling and Software, 2018.
MINT: Model Integration Through Knowledge-Powered Data and Process Composition [pdf]Paper   link   bibtex  
  2017 (3)
The role of uncertainty in estimating lead/lag relationships in marine sedimentary archives: a case study from the tropical Pacific. Khider, D.; Ahn, S.; Lisiecki, L.; Lawrence, C.; and Kienast, M. Paleoceanography, 32(11): 1275–1290. 2017.
The role of uncertainty in estimating lead/lag relationships in marine sedimentary archives: a case study from the tropical Pacific [pdf]Paper   link   bibtex  
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. Gil, Y.; Garijo, D.; Ratnakar, V.; Khider, D.; Emile-Geay, J.; and McKay, N. In International Semantic Web Conference, pages 231–246, 2017. Springer, Cham
A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations [pdf]Paper   doi   link   bibtex  
A probabilistic Pliocene–Pleistocene stack of benthic δ18O using a profile hidden Markov model. Ahn, S.; Khider, D.; Lisiecki, L. E; and Lawrence, C. E Dynamics and Statistics of the Climate System, 2(1). 2017.
A probabilistic Pliocene–Pleistocene stack of benthic δ18O using a profile hidden Markov model [pdf]Paper   doi   link   bibtex   1 download  
  2016 (1)
Decadal to centennial fluctuations in the intensity of the eastern tropical North Pacific oxygen minimum zone during the last 1200 years. Tems, C. E; Berelson, W. M; Thunell, R.; Tappa, E.; Xu, X.; Khider, D.; Lund, S.; González-Yajimovich, O.; and Hamann, Y. Paleoceanography, 31(8): 1138–1151. 2016.
Decadal to centennial fluctuations in the intensity of the eastern tropical North Pacific oxygen minimum zone during the last 1200 years [pdf]Paper   doi   link   bibtex  
  2015 (1)
A Bayesian, multivariate calibration for Globigerinoides ruber Mg/Ca. Khider, D.; Huerta, G.; Jackson, C.; Stott, L.; and Emile-Geay, J. Geochemistry, Geophysics, Geosystems, 16(9): 2916–2932. 2015.
A Bayesian, multivariate calibration for Globigerinoides ruber Mg/Ca [pdf]Paper   doi   link   bibtex   1 download  
  2014 (2)
Assessing millennial-scale variability during the Holocene: A perspective from the western tropical Pacific. Khider, D.; Jackson, C. S; and Stott, L. Paleoceanography, 29(3): 143–159. 2014.
Assessing millennial-scale variability during the Holocene: A perspective from the western tropical Pacific [pdf]Paper   doi   link   bibtex  
Probabilistic sequence alignment of stratigraphic records. Lin, L.; Khider, D.; Lisiecki, L. E; and Lawrence, C. E Paleoceanography, 29(10): 976–989. 2014.
Probabilistic sequence alignment of stratigraphic records [pdf]Paper   doi   link   bibtex  
  2011 (1)
Assessing El Niño Southern Oscillation variability during the past millennium. Khider, D.; Stott, L.; Emile-Geay, J.; Thunell, R.; and Hammond, D. Paleoceanography, 26(3). 2011.
Assessing El Niño Southern Oscillation variability during the past millennium [pdf]Paper   doi   link   bibtex   1 download  
  2009 (1)
A new perspective on the hydroclimate variability in northern South America during the Little Ice Age. Reuter, J.; Stott, L.; Khider, D.; Sinha, A.; Cheng, H.; and Edwards, R L. Geophysical Research Letters, 36(21). 2009.
A new perspective on the hydroclimate variability in northern South America during the Little Ice Age [pdf]Paper   doi   link   bibtex   1 download