The <i>Amborella</i> Genome and the Evolution of Flowering Plants. Amborella Genome Project, Albert, V. A., Barbazuk, W. B., dePamphilis , C. W., Der, J. P., Leebens-Mack, J., Ma, H., Palmer, J. D., Rounsley, S., Sankoff, D., Schuster, S. C., Soltis, D. E., Soltis, P. S., Wessler, S. R., Wing, R. A., Albert, V. A., Ammiraju, J. S. S., Barbazuk, W. B., Chamala, S., Chanderbali, A. S., dePamphilis , C. W., Der, J. P., Determann, R., Leebens-Mack, J., Ma, H., Ralph, P., Rounsley, S., Schuster, S. C., Soltis, D. E., Soltis, P. S., Talag, J., Tomsho, L., Walts, B., Wanke, S., Wing, R. A., Albert, V. A., Barbazuk, W. B., Chamala, S., Chanderbali, A. S., Chang, T., Determann, R., Lan, T., Soltis, D. E., Soltis, P. S., Arikit, S., Axtell, M. J., Ayyampalayam, S., Barbazuk, W. B., Burnette, J. M., Chamala, S., De Paoli, E., dePamphilis , C. W., Der, J. P., Estill, J. C., Farrell, N. P., Harkess, A., Jiao, Y., Leebens-Mack, J., Liu, K., Mei, W., Meyers, B. C., Shahid, S., Wafula, E., Walts, B., Wessler, S. R., Zhai, J., Zhang, X., Albert, V. A., Carretero-Paulet, L., dePamphilis , C. W., Der, J. P., Jiao, Y., Leebens-Mack, J., Lyons, E., Sankoff, D., Tang, H., Wafula, E., Zheng, C., Albert, V. A., Altman, N. S., Barbazuk, W. B., Carretero-Paulet, L., dePamphilis , C. W., Der, J. P., Estill, J. C., Jiao, Y., Leebens-Mack, J., Liu, K., Mei, W., Wafula, E., Altman, N. S., Arikit, S., Axtell, M. J., Chamala, S., Chanderbali, A. S., Chen, F., Chen, J., Chiang, V., De Paoli, E., dePamphilis , C. W., Der, J. P., Determann, R., Fogliani, B., Guo, C., Harholt, J., Harkess, A., Job, C., Job, D., Kim, S., Kong, H., Leebens-Mack, J., Li, G., Li, L., Liu, J., Ma, H., Meyers, B. C., Park, J., Qi, X., Rajjou, L., Burtet-Sarramegna, V., Sederoff, R., Shahid, S., Soltis, D. E., Soltis, P. S., Sun, Y., Ulvskov, P., Villegente, M., Xue, J., Yeh, T., Yu, X., Zhai, J., Acosta, J. J., Albert, V. A., Barbazuk, W. B., Bruenn, R. A., Chamala, S., de Kochko, A., dePamphilis , C. W., Der, J. P., Herrera-Estrella, L. R., Ibarra-Laclette, E., Kirst, M., Leebens-Mack, J., Pissis, S. P., Poncet, V., Schuster, S. C., Soltis, D. E., Soltis, P. S., & Tomsho, L. Science, 342(6165):1241089, December, 2013.
The <i>Amborella</i> Genome and the Evolution of Flowering Plants [link]Paper  doi  abstract   bibtex   
Shaping Plant Evolution Amborella trichopoda is understood to be the most basal extant flowering plant and its genome is anticipated to provide insights into the evolution of plant life on Earth (see the Perspective by Adams ). To validate and assemble the sequence, Chamala et al. (p. 1516 ) combined fluorescent in situ hybridization (FISH), genomic mapping, and next-generation sequencing. The Amborella Genome Project (p. 10.1126/science.1241089 ) was able to infer that a whole-genome duplication event preceded the evolution of this ancestral angiosperm, and Rice et al. (p. 1468 ) found that numerous genes in the mitochondrion were acquired by horizontal gene transfer from other plants, including almost four entire mitochondrial genomes from mosses and algae. , The Amborella genome retains features of the ancestral angiosperm and illuminates flowering plant genomic evolution. , Amborella trichopoda is strongly supported as the single living species of the sister lineage to all other extant flowering plants, providing a unique reference for inferring the genome content and structure of the most recent common ancestor (MRCA) of living angiosperms. Sequencing the Amborella genome, we identified an ancient genome duplication predating angiosperm diversification, without evidence of subsequent, lineage-specific genome duplications. Comparisons between Amborella and other angiosperms facilitated reconstruction of the ancestral angiosperm gene content and gene order in the MRCA of core eudicots. We identify new gene families, gene duplications, and floral protein-protein interactions that first appeared in the ancestral angiosperm. Transposable elements in Amborella are ancient and highly divergent, with no recent transposon radiations. Population genomic analysis across Amborella ’s native range in New Caledonia reveals a recent genetic bottleneck and geographic structure with conservation implications.
@article{amborella_genome_project_amborella_2013,
	title = {The \textit{{Amborella}} {Genome} and the {Evolution} of {Flowering} {Plants}},
	volume = {342},
	issn = {0036-8075, 1095-9203},
	url = {https://www.science.org/doi/10.1126/science.1241089},
	doi = {10.1126/science.1241089},
	abstract = {Shaping Plant Evolution
            
              Amborella trichopoda
              is understood to be the most basal extant flowering plant and its genome is anticipated to provide insights into the evolution of plant life on Earth (see the Perspective by
              
                Adams
              
              ). To validate and assemble the sequence,
              
                Chamala
                et al.
              
              (p.
              1516
              ) combined fluorescent in situ hybridization (FISH), genomic mapping, and next-generation sequencing. The
              Amborella Genome Project
              (p.
              10.1126/science.1241089
              ) was able to infer that a whole-genome duplication event preceded the evolution of this ancestral angiosperm, and
              
                Rice
                et al.
              
              (p.
              1468
              ) found that numerous genes in the mitochondrion were acquired by horizontal gene transfer from other plants, including almost four entire mitochondrial genomes from mosses and algae.
            
          , 
            
              The
              Amborella
              genome retains features of the ancestral angiosperm and illuminates flowering plant genomic evolution.
            
          , 
            
              Amborella trichopoda
              is strongly supported as the single living species of the sister lineage to all other extant flowering plants, providing a unique reference for inferring the genome content and structure of the most recent common ancestor (MRCA) of living angiosperms. Sequencing the
              Amborella
              genome, we identified an ancient genome duplication predating angiosperm diversification, without evidence of subsequent, lineage-specific genome duplications. Comparisons between
              Amborella
              and other angiosperms facilitated reconstruction of the ancestral angiosperm gene content and gene order in the MRCA of core eudicots. We identify new gene families, gene duplications, and floral protein-protein interactions that first appeared in the ancestral angiosperm. Transposable elements in
              Amborella
              are ancient and highly divergent, with no recent transposon radiations. Population genomic analysis across
              Amborella
              ’s native range in New Caledonia reveals a recent genetic bottleneck and geographic structure with conservation implications.},
	language = {en},
	number = {6165},
	urldate = {2023-02-06},
	journal = {Science},
	author = {{Amborella Genome Project} and Albert, Victor A. and Barbazuk, W. Bradley and dePamphilis, Claude W. and Der, Joshua P. and Leebens-Mack, James and Ma, Hong and Palmer, Jeffrey D. and Rounsley, Steve and Sankoff, David and Schuster, Stephan C. and Soltis, Douglas E. and Soltis, Pamela S. and Wessler, Susan R. and Wing, Rod A. and Albert, Victor A. and Ammiraju, Jetty S. S. and Barbazuk, W. Bradley and Chamala, Srikar and Chanderbali, Andre S. and dePamphilis, Claude W. and Der, Joshua P. and Determann, Ronald and Leebens-Mack, James and Ma, Hong and Ralph, Paula and Rounsley, Steve and Schuster, Stephan C. and Soltis, Douglas E. and Soltis, Pamela S. and Talag, Jason and Tomsho, Lynn and Walts, Brandon and Wanke, Stefan and Wing, Rod A. and Albert, Victor A. and Barbazuk, W. Bradley and Chamala, Srikar and Chanderbali, Andre S. and Chang, Tien-Hao and Determann, Ronald and Lan, Tianying and Soltis, Douglas E. and Soltis, Pamela S. and Arikit, Siwaret and Axtell, Michael J. and Ayyampalayam, Saravanaraj and Barbazuk, W. Bradley and Burnette, James M. and Chamala, Srikar and De Paoli, Emanuele and dePamphilis, Claude W. and Der, Joshua P. and Estill, James C. and Farrell, Nina P. and Harkess, Alex and Jiao, Yuannian and Leebens-Mack, James and Liu, Kun and Mei, Wenbin and Meyers, Blake C. and Shahid, Saima and Wafula, Eric and Walts, Brandon and Wessler, Susan R. and Zhai, Jixian and Zhang, Xiaoyu and Albert, Victor A. and Carretero-Paulet, Lorenzo and dePamphilis, Claude W. and Der, Joshua P. and Jiao, Yuannian and Leebens-Mack, James and Lyons, Eric and Sankoff, David and Tang, Haibao and Wafula, Eric and Zheng, Chunfang and Albert, Victor A. and Altman, Naomi S. and Barbazuk, W. Bradley and Carretero-Paulet, Lorenzo and dePamphilis, Claude W. and Der, Joshua P. and Estill, James C. and Jiao, Yuannian and Leebens-Mack, James and Liu, Kun and Mei, Wenbin and Wafula, Eric and Altman, Naomi S. and Arikit, Siwaret and Axtell, Michael J. and Chamala, Srikar and Chanderbali, Andre S. and Chen, Feng and Chen, Jian-Qun and Chiang, Vincent and De Paoli, Emanuele and dePamphilis, Claude W. and Der, Joshua P. and Determann, Ronald and Fogliani, Bruno and Guo, Chunce and Harholt, Jesper and Harkess, Alex and Job, Claudette and Job, Dominique and Kim, Sangtae and Kong, Hongzhi and Leebens-Mack, James and Li, Guanglin and Li, Lin and Liu, Jie and Ma, Hong and Meyers, Blake C. and Park, Jongsun and Qi, Xinshuai and Rajjou, Loïc and Burtet-Sarramegna, Valérie and Sederoff, Ron and Shahid, Saima and Soltis, Douglas E. and Soltis, Pamela S. and Sun, Ying-Hsuan and Ulvskov, Peter and Villegente, Matthieu and Xue, Jia-Yu and Yeh, Ting-Feng and Yu, Xianxian and Zhai, Jixian and Acosta, Juan J. and Albert, Victor A. and Barbazuk, W. Bradley and Bruenn, Riva A. and Chamala, Srikar and de Kochko, Alexandre and dePamphilis, Claude W. and Der, Joshua P. and Herrera-Estrella, Luis R. and Ibarra-Laclette, Enrique and Kirst, Matias and Leebens-Mack, James and Pissis, Solon P. and Poncet, Valérie and Schuster, Stephan C. and Soltis, Douglas E. and Soltis, Pamela S. and Tomsho, Lynn},
	month = dec,
	year = {2013},
	pages = {1241089},
}
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