@article{bailey_helios_2019,
	title = {Helios: {A} {Scalable} {3D} {Plant} and {Environmental} {Biophysical} {Modeling} {Framework}},
	volume = {10},
	issn = {1664-462X},
	url = {https://pubmed.ncbi.nlm.nih.gov/31681349},
	doi = {10.3389/fpls.2019.01185},
	abstract = {This article presents an overview of Helios, a new three-dimensional (3D) plant and environmental modeling framework. Helios is a model coupling framework designed to provide maximum flexibility in integrating and running arbitrary 3D environmental system models. Users interact with Helios through a well-documented open-source C++ API. Version 1.0 comes with model plug-ins for radiation transport, the surface energy balance, stomatal conductance, photosynthesis, solar position, and procedural tree generation. Additional plug-ins are also available for visualizing model geometry and data and for processing and integrating LiDAR scanning data. Many of the plug-ins perform calculations on the graphics processing unit, which allows for efficient simulation of very large domains with high detail. An example modeling study is presented in which leaf-level heterogeneity in water usage and photosynthesis of an orchard is examined to understand how this leaf-scale variability contributes to whole-tree and -canopy fluxes.},
	language = {eng},
	journal = {Frontiers in plant science},
	author = {Bailey, Brian N},
	year = {2019},
	note = {Publisher: Frontiers Media S.A.},
	keywords = {biophysical model, functional-structural plant model, software architecture, terrestrial LiDAR, three-dimensional model},
	pages = {1185--1185},
}

{"_id":"55MFaHcq6WWAYv6be","bibbaseid":"bailey-heliosascalable3dplantandenvironmentalbiophysicalmodelingframework-2019","author_short":["Bailey, B. N"],"bibdata":{"bibtype":"article","type":"article","title":"Helios: A Scalable 3D Plant and Environmental Biophysical Modeling Framework","volume":"10","issn":"1664-462X","url":"https://pubmed.ncbi.nlm.nih.gov/31681349","doi":"10.3389/fpls.2019.01185","abstract":"This article presents an overview of Helios, a new three-dimensional (3D) plant and environmental modeling framework. Helios is a model coupling framework designed to provide maximum flexibility in integrating and running arbitrary 3D environmental system models. Users interact with Helios through a well-documented open-source C++ API. Version 1.0 comes with model plug-ins for radiation transport, the surface energy balance, stomatal conductance, photosynthesis, solar position, and procedural tree generation. Additional plug-ins are also available for visualizing model geometry and data and for processing and integrating LiDAR scanning data. Many of the plug-ins perform calculations on the graphics processing unit, which allows for efficient simulation of very large domains with high detail. An example modeling study is presented in which leaf-level heterogeneity in water usage and photosynthesis of an orchard is examined to understand how this leaf-scale variability contributes to whole-tree and -canopy fluxes.","language":"eng","journal":"Frontiers in plant science","author":[{"propositions":[],"lastnames":["Bailey"],"firstnames":["Brian","N"],"suffixes":[]}],"year":"2019","note":"Publisher: Frontiers Media S.A.","keywords":"biophysical model, functional-structural plant model, software architecture, terrestrial LiDAR, three-dimensional model","pages":"1185–1185","bibtex":"@article{bailey_helios_2019,\n\ttitle = {Helios: {A} {Scalable} {3D} {Plant} and {Environmental} {Biophysical} {Modeling} {Framework}},\n\tvolume = {10},\n\tissn = {1664-462X},\n\turl = {https://pubmed.ncbi.nlm.nih.gov/31681349},\n\tdoi = {10.3389/fpls.2019.01185},\n\tabstract = {This article presents an overview of Helios, a new three-dimensional (3D) plant and environmental modeling framework. Helios is a model coupling framework designed to provide maximum flexibility in integrating and running arbitrary 3D environmental system models. Users interact with Helios through a well-documented open-source C++ API. Version 1.0 comes with model plug-ins for radiation transport, the surface energy balance, stomatal conductance, photosynthesis, solar position, and procedural tree generation. Additional plug-ins are also available for visualizing model geometry and data and for processing and integrating LiDAR scanning data. Many of the plug-ins perform calculations on the graphics processing unit, which allows for efficient simulation of very large domains with high detail. An example modeling study is presented in which leaf-level heterogeneity in water usage and photosynthesis of an orchard is examined to understand how this leaf-scale variability contributes to whole-tree and -canopy fluxes.},\n\tlanguage = {eng},\n\tjournal = {Frontiers in plant science},\n\tauthor = {Bailey, Brian N},\n\tyear = {2019},\n\tnote = {Publisher: Frontiers Media S.A.},\n\tkeywords = {biophysical model, functional-structural plant model, software architecture, terrestrial LiDAR, three-dimensional model},\n\tpages = {1185--1185},\n}\n\n","author_short":["Bailey, B. N"],"key":"bailey_helios_2019","id":"bailey_helios_2019","bibbaseid":"bailey-heliosascalable3dplantandenvironmentalbiophysicalmodelingframework-2019","role":"author","urls":{"Paper":"https://pubmed.ncbi.nlm.nih.gov/31681349"},"keyword":["biophysical model","functional-structural plant model","software architecture","terrestrial LiDAR","three-dimensional model"],"metadata":{"authorlinks":{}}},"bibtype":"article","biburl":"https://bibbase.org/zotero/mcrimaldi","dataSources":["dq7oSdLvMkrCCarLK"],"keywords":["biophysical model","functional-structural plant model","software architecture","terrestrial lidar","three-dimensional model"],"search_terms":["helios","scalable","plant","environmental","biophysical","modeling","framework","bailey"],"title":"Helios: A Scalable 3D Plant and Environmental Biophysical Modeling Framework","year":2019}