@article{
 title = {Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge},
 type = {article},
 year = {2018},
 websites = {http://arxiv.org/abs/1811.02629},
 id = {9220cb01-73b4-3bb5-b1b2-7aac710a23e9},
 created = {2024-01-13T06:15:56.440Z},
 file_attached = {true},
 profile_id = {d5b9f595-4104-33d2-b640-e84dee1b7ded},
 last_modified = {2025-02-21T12:00:24.631Z},
 read = {false},
 starred = {false},
 authored = {true},
 confirmed = {true},
 hidden = {false},
 folder_uuids = {ded4b384-1a9c-491d-88dd-c5e6a88d479d},
 private_publication = {false},
 abstract = {Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset.},
 bibtype = {article},
 author = {Bakas, Spyridon and Reyes, Mauricio and Jakab, Andras and Bauer, Stefan and Rempfler, Markus and Crimi, Alessandro and Shinohara, Russell Takeshi and Berger, Christoph and Ha, Sung Min and Rozycki, Martin and Prastawa, Marcel and Alberts, Esther and Lipkova, Jana and Freymann, John and Kirby, Justin and Bilello, Michel and Fathallah-Shaykh, Hassan and Wiest, Roland and Kirschke, Jan and Wiestler, Benedikt and Colen, Rivka and Kotrotsou, Aikaterini and Lamontagne, Pamela and Marcus, Daniel and Milchenko, Mikhail and Nazeri, Arash and Weber, Marc-Andre and Mahajan, Abhishek and Baid, Ujjwal and Gerstner, Elizabeth and Kwon, Dongjin and Acharya, Gagan and Agarwal, Manu and Alam, Mahbubul and Albiol, Alberto and Albiol, Antonio and Albiol, Francisco J. and Alex, Varghese and Allinson, Nigel and Amorim, Pedro H. A. and Amrutkar, Abhijit and Anand, Ganesh and Andermatt, Simon and Arbel, Tal and Arbelaez, Pablo and Avery, Aaron and Azmat, Muneeza and B., Pranjal and Bai, W and Banerjee, Subhashis and Barth, Bill and Batchelder, Thomas and Batmanghelich, Kayhan and Battistella, Enzo and Beers, Andrew and Belyaev, Mikhail and Bendszus, Martin and Benson, Eze and Bernal, Jose and Bharath, Halandur Nagaraja and Biros, George and Bisdas, Sotirios and Brown, James and Cabezas, Mariano and Cao, Shilei and Cardoso, Jorge M. and Carver, Eric N and Casamitjana, Adrià and Castillo, Laura Silvana and Catà, Marcel and Cattin, Philippe and Cerigues, Albert and Chagas, Vinicius S. and Chandra, Siddhartha and Chang, Yi-Ju and Chang, Shiyu and Chang, Ken and Chazalon, Joseph and Chen, Shengcong and Chen, Wei and Chen, Jefferson W and Chen, Zhaolin and Cheng, Kun and Choudhury, Ahana Roy and Chylla, Roger and Clérigues, Albert and Colleman, Steven and Colmeiro, Ramiro German Rodriguez and Combalia, Marc and Costa, Anthony and Cui, Xiaomeng and Dai, Zhenzhen and Dai, Lutao and Daza, Laura Alexandra and Deutsch, Eric and Ding, Changxing and Dong, Chao and Dong, Shidu and Dudzik, Wojciech and Eaton-Rosen, Zach and Egan, Gary and Escudero, Guilherme and Estienne, Théo and Everson, Richard and Fabrizio, Jonathan and Fan, Yong and Fang, Longwei and Feng, Xue and Ferrante, Enzo and Fidon, Lucas and Fischer, Martin and French, Andrew P. and Fridman, Naomi and Fu, Huan and Fuentes, David and Gao, Yaozong and Gates, Evan and Gering, David and Gholami, Amir and Gierke, Willi and Glocker, Ben and Gong, Mingming and González-Villá, Sandra and Grosges, T. and Guan, Yuanfang and Guo, Sheng and Gupta, Sudeep and Han, Woo-Sup and Han, Il Song and Harmuth, Konstantin and He, Huiguang and Hernández-Sabaté, Aura and Herrmann, Evelyn and Himthani, Naveen and Hsu, Winston and Hsu, Cheyu and Hu, Xiaojun and Hu, Xiaobin and Hu, Yan and Hu, Yifan and Hua, Rui and Huang, Teng-Yi and Huang, Weilin and Van Huffel, Sabine and Huo, Quan and HV, Vivek and Iftekharuddin, Khan M. and Isensee, Fabian and Islam, Mobarakol and Jackson, Aaron S. and Jambawalikar, Sachin R. and Jesson, Andrew and Jian, Weijian and Jin, Peter and Jose, V Jeya Maria and Jungo, Alain and Kainz, B and Kamnitsas, Konstantinos and Kao, Po-Yu and Karnawat, Ayush and Kellermeier, Thomas and Kermi, Adel and Keutzer, Kurt and Khadir, Mohamed Tarek and Khened, Mahendra and Kickingereder, Philipp and Kim, Geena and King, Nik and Knapp, Haley and Knecht, Urspeter and Kohli, Lisa and Kong, Deren and Kong, Xiangmao and Koppers, Simon and Kori, Avinash and Krishnamurthi, Ganapathy and Krivov, Egor and Kumar, Piyush and Kushibar, Kaisar and Lachinov, Dmitrii and Lambrou, Tryphon and Lee, Joon and Lee, Chengen and Lee, Yuehchou and Lee, M and Lefkovits, Szidonia and Lefkovits, Laszlo and Levitt, James and Li, Tengfei and Li, Hongwei and Li, Wenqi and Li, Hongyang and Li, Xiaochuan and Li, Yuexiang and Li, Heng and Li, Zhenye and Li, Xiaoyu and Li, Zeju and Li, XiaoGang and Li, Wenqi and Lin, Zheng-Shen and Lin, Fengming and Lio, Pietro and Liu, Chang and Liu, Boqiang and Liu, Xiang and Liu, Mingyuan and Liu, Ju and Liu, Luyan and Llado, Xavier and Lopez, Marc Moreno and Lorenzo, Pablo Ribalta and Lu, Zhentai and Luo, Lin and Luo, Zhigang and Ma, Jun and Ma, Kai and Mackie, Thomas and Madabushi, Anant and Mahmoudi, Issam and Maier-Hein, Klaus H. and Maji, Pradipta and Mammen, CP and Mang, Andreas and Manjunath, B. S. and Marcinkiewicz, Michal and McDonagh, S and McKenna, Stephen and McKinley, Richard and Mehl, Miriam and Mehta, Sachin and Mehta, Raghav and Meier, Raphael and Meinel, Christoph and Merhof, Dorit and Meyer, Craig and Miller, Robert and Mitra, Sushmita and Moiyadi, Aliasgar and Molina-Garcia, David and Monteiro, Miguel A. B. and Mrukwa, Grzegorz and Myronenko, Andriy and Nalepa, Jakub and Ngo, Thuyen and Nie, Dong and Ning, Holly and Niu, Chen and Nuechterlein, Nicholas K and Oermann, Eric and Oliveira, Arlindo and Oliveira, Diego D. C. and Oliver, Arnau and Osman, Alexander F. I. and Ou, Yu-Nian and Ourselin, Sebastien and Paragios, Nikos and Park, Moo Sung and Paschke, Brad and Pauloski, J. Gregory and Pawar, Kamlesh and Pawlowski, Nick and Pei, Linmin and Peng, Suting and Pereira, Silvio M. and Perez-Beteta, Julian and Perez-Garcia, Victor M. and Pezold, Simon and Pham, Bao and Phophalia, Ashish and Piella, Gemma and Pillai, G. N. and Piraud, Marie and Pisov, Maxim and Popli, Anmol and Pound, Michael P. and Pourreza, Reza and Prasanna, Prateek and Prkovska, Vesna and Pridmore, Tony P. and Puch, Santi and Puybareau, Élodie and Qian, Buyue and Qiao, Xu and Rajchl, Martin and Rane, Swapnil and Rebsamen, Michael and Ren, Hongliang and Ren, Xuhua and Revanuru, Karthik and Rezaei, Mina and Rippel, Oliver and Rivera, Luis Carlos and Robert, Charlotte and Rosen, Bruce and Rueckert, Daniel and Safwan, Mohammed and Salem, Mostafa and Salvi, Joaquim and Sanchez, Irina and Sánchez, Irina and Santos, Heitor M. and Sartor, Emmett and Schellingerhout, Dawid and Scheufele, Klaudius and Scott, Matthew R. and Scussel, Artur A. and Sedlar, Sara and Serrano-Rubio, Juan Pablo and Shah, N. Jon and Shah, Nameetha and Shaikh, Mazhar and Shankar, B. Uma and Shboul, Zeina and Shen, Haipeng and Shen, Dinggang and Shen, Linlin and Shen, Haocheng and Shenoy, Varun and Shi, Feng and Shin, Hyung Eun and Shu, Hai and Sima, Diana and Sinclair, M and Smedby, Orjan and Snyder, James M. and Soltaninejad, Mohammadreza and Song, Guidong and Soni, Mehul and Stawiaski, Jean and Subramanian, Shashank and Sun, Li and Sun, Roger and Sun, Jiawei and Sun, Kay and Sun, Yu and Sun, Guoxia and Sun, Shuang and Suter, Yannick R and Szilagyi, Laszlo and Talbar, Sanjay and Tao, Dacheng and Tao, Dacheng and Teng, Zhongzhao and Thakur, Siddhesh and Thakur, Meenakshi H and Tharakan, Sameer and Tiwari, Pallavi and Tochon, Guillaume and Tran, Tuan and Tsai, Yuhsiang M. and Tseng, Kuan-Lun and Tuan, Tran Anh and Turlapov, Vadim and Tustison, Nicholas and Vakalopoulou, Maria and Valverde, Sergi and Vanguri, Rami and Vasiliev, Evgeny and Ventura, Jonathan and Vera, Luis and Vercauteren, Tom and Verrastro, C. A. and Vidyaratne, Lasitha and Vilaplana, Veronica and Vivekanandan, Ajeet and Wang, Guotai and Wang, Qian and Wang, Chiatse J. and Wang, Weichung and Wang, Duo and Wang, Ruixuan and Wang, Yuanyuan and Wang, Chunliang and Wang, Guotai and Wen, Ning and Wen, Xin and Weninger, Leon and Wick, Wolfgang and Wu, Shaocheng and Wu, Qiang and Wu, Yihong and Xia, Yong and Xu, Yanwu and Xu, Xiaowen and Xu, Peiyuan and Yang, Tsai-Ling and Yang, Xiaoping and Yang, Hao-Yu and Yang, Junlin and Yang, Haojin and Yang, Guang and Yao, Hongdou and Ye, Xujiong and Yin, Changchang and Young-Moxon, Brett and Yu, Jinhua and Yue, Xiangyu and Zhang, Songtao and Zhang, Angela and Zhang, Kun and Zhang, Xuejie and Zhang, Lichi and Zhang, Xiaoyue and Zhang, Yazhuo and Zhang, Lei and Zhang, Jianguo and Zhang, Xiang and Zhang, Tianhao and Zhao, Sicheng and Zhao, Yu and Zhao, Xiaomei and Zhao, Liang and Zheng, Yefeng and Zhong, Liming and Zhou, Chenhong and Zhou, Xiaobing and Zhou, Fan and Zhu, Hongtu and Zhu, Jin and Zhuge, Ying and Zong, Weiwei and Kalpathy-Cramer, Jayashree and Farahani, Keyvan and Davatzikos, Christos and van Leemput, Koen and Menze, Bjoern},
 journal = {arXiv preprint arXiv:1811.02629}
}

{"_id":"qGLmmTmKACxKqiDpB","bibbaseid":"bakas-reyes-jakab-bauer-rempfler-crimi-shinohara-berger-etal-identifyingthebestmachinelearningalgorithmsforbraintumorsegmentationprogressionassessmentandoverallsurvivalpredictioninthebratschallenge-2018","author_short":["Bakas, S.","Reyes, M.","Jakab, A.","Bauer, S.","Rempfler, M.","Crimi, A.","Shinohara, R., T.","Berger, C.","Ha, S., M.","Rozycki, M.","Prastawa, M.","Alberts, E.","Lipkova, J.","Freymann, J.","Kirby, J.","Bilello, M.","Fathallah-Shaykh, H.","Wiest, R.","Kirschke, J.","Wiestler, B.","Colen, R.","Kotrotsou, A.","Lamontagne, P.","Marcus, D.","Milchenko, M.","Nazeri, A.","Weber, M.","Mahajan, A.","Baid, U.","Gerstner, E.","Kwon, D.","Acharya, G.","Agarwal, M.","Alam, M.","Albiol, A.","Albiol, A.","Albiol, F., J.","Alex, V.","Allinson, N.","Amorim, P., H., A.","Amrutkar, A.","Anand, G.","Andermatt, S.","Arbel, T.","Arbelaez, P.","Avery, A.","Azmat, M.","B., P.","Bai, W.","Banerjee, S.","Barth, B.","Batchelder, T.","Batmanghelich, K.","Battistella, E.","Beers, A.","Belyaev, M.","Bendszus, M.","Benson, E.","Bernal, J.","Bharath, H., N.","Biros, G.","Bisdas, S.","Brown, J.","Cabezas, M.","Cao, S.","Cardoso, J., M.","Carver, E., N.","Casamitjana, A.","Castillo, L., S.","Catà, M.","Cattin, P.","Cerigues, A.","Chagas, V., S.","Chandra, S.","Chang, Y.","Chang, S.","Chang, K.","Chazalon, J.","Chen, S.","Chen, W.","Chen, J., W.","Chen, Z.","Cheng, K.","Choudhury, A., R.","Chylla, R.","Clérigues, A.","Colleman, S.","Colmeiro, R., G., R.","Combalia, M.","Costa, A.","Cui, X.","Dai, Z.","Dai, L.","Daza, L., A.","Deutsch, E.","Ding, C.","Dong, C.","Dong, S.","Dudzik, W.","Eaton-Rosen, Z.","Egan, G.","Escudero, G.","Estienne, T.","Everson, R.","Fabrizio, J.","Fan, Y.","Fang, L.","Feng, X.","Ferrante, E.","Fidon, L.","Fischer, M.","French, A., P.","Fridman, N.","Fu, H.","Fuentes, D.","Gao, Y.","Gates, E.","Gering, D.","Gholami, A.","Gierke, W.","Glocker, B.","Gong, M.","González-Villá, S.","Grosges, T.","Guan, Y.","Guo, S.","Gupta, S.","Han, W.","Han, I., S.","Harmuth, K.","He, H.","Hernández-Sabaté, A.","Herrmann, E.","Himthani, N.","Hsu, W.","Hsu, C.","Hu, X.","Hu, X.","Hu, Y.","Hu, Y.","Hua, R.","Huang, T.","Huang, W.","Van Huffel, S.","Huo, Q.","HV, V.","Iftekharuddin, K., M.","Isensee, F.","Islam, M.","Jackson, A., S.","Jambawalikar, S., R.","Jesson, A.","Jian, W.","Jin, P.","Jose, V., J., M.","Jungo, A.","Kainz, B.","Kamnitsas, K.","Kao, P.","Karnawat, A.","Kellermeier, T.","Kermi, A.","Keutzer, K.","Khadir, M., T.","Khened, M.","Kickingereder, P.","Kim, G.","King, N.","Knapp, H.","Knecht, U.","Kohli, L.","Kong, D.","Kong, X.","Koppers, S.","Kori, A.","Krishnamurthi, G.","Krivov, E.","Kumar, P.","Kushibar, K.","Lachinov, D.","Lambrou, T.","Lee, J.","Lee, C.","Lee, Y.","Lee, M.","Lefkovits, S.","Lefkovits, L.","Levitt, J.","Li, T.","Li, H.","Li, W.","Li, H.","Li, X.","Li, Y.","Li, H.","Li, Z.","Li, X.","Li, Z.","Li, X.","Li, W.","Lin, Z.","Lin, F.","Lio, P.","Liu, C.","Liu, B.","Liu, X.","Liu, M.","Liu, J.","Liu, L.","Llado, X.","Lopez, M., M.","Lorenzo, P., R.","Lu, Z.","Luo, L.","Luo, Z.","Ma, J.","Ma, K.","Mackie, T.","Madabushi, A.","Mahmoudi, I.","Maier-Hein, K., H.","Maji, P.","Mammen, C.","Mang, A.","Manjunath, B., S.","Marcinkiewicz, M.","McDonagh, S.","McKenna, S.","McKinley, R.","Mehl, M.","Mehta, S.","Mehta, R.","Meier, R.","Meinel, C.","Merhof, D.","Meyer, C.","Miller, R.","Mitra, S.","Moiyadi, A.","Molina-Garcia, D.","Monteiro, M., A., B.","Mrukwa, G.","Myronenko, A.","Nalepa, J.","Ngo, T.","Nie, D.","Ning, H.","Niu, C.","Nuechterlein, N., K.","Oermann, E.","Oliveira, A.","Oliveira, D., D., C.","Oliver, A.","Osman, A., F., I.","Ou, Y.","Ourselin, S.","Paragios, N.","Park, M., S.","Paschke, B.","Pauloski, J., G.","Pawar, K.","Pawlowski, N.","Pei, L.","Peng, S.","Pereira, S., M.","Perez-Beteta, J.","Perez-Garcia, V., M.","Pezold, S.","Pham, B.","Phophalia, A.","Piella, G.","Pillai, G., N.","Piraud, M.","Pisov, M.","Popli, A.","Pound, M., P.","Pourreza, R.","Prasanna, P.","Prkovska, V.","Pridmore, T., P.","Puch, S.","Puybareau, É.","Qian, B.","Qiao, X.","Rajchl, M.","Rane, S.","Rebsamen, M.","Ren, H.","Ren, X.","Revanuru, K.","Rezaei, M.","Rippel, O.","Rivera, L., C.","Robert, C.","Rosen, B.","Rueckert, D.","Safwan, M.","Salem, M.","Salvi, J.","Sanchez, I.","Sánchez, I.","Santos, H., M.","Sartor, E.","Schellingerhout, D.","Scheufele, K.","Scott, M., R.","Scussel, A., A.","Sedlar, S.","Serrano-Rubio, J., P.","Shah, N., J.","Shah, N.","Shaikh, M.","Shankar, B., U.","Shboul, Z.","Shen, H.","Shen, D.","Shen, L.","Shen, H.","Shenoy, V.","Shi, F.","Shin, H., E.","Shu, H.","Sima, D.","Sinclair, M.","Smedby, O.","Snyder, J., M.","Soltaninejad, M.","Song, G.","Soni, M.","Stawiaski, J.","Subramanian, S.","Sun, L.","Sun, R.","Sun, J.","Sun, K.","Sun, Y.","Sun, G.","Sun, S.","Suter, Y., R.","Szilagyi, L.","Talbar, S.","Tao, D.","Tao, D.","Teng, Z.","Thakur, S.","Thakur, M., H.","Tharakan, S.","Tiwari, P.","Tochon, G.","Tran, T.","Tsai, Y., M.","Tseng, K.","Tuan, T., A.","Turlapov, V.","Tustison, N.","Vakalopoulou, M.","Valverde, S.","Vanguri, R.","Vasiliev, E.","Ventura, J.","Vera, L.","Vercauteren, T.","Verrastro, C., A.","Vidyaratne, L.","Vilaplana, V.","Vivekanandan, A.","Wang, G.","Wang, Q.","Wang, C., J.","Wang, W.","Wang, D.","Wang, R.","Wang, Y.","Wang, C.","Wang, G.","Wen, N.","Wen, X.","Weninger, L.","Wick, W.","Wu, S.","Wu, Q.","Wu, Y.","Xia, Y.","Xu, Y.","Xu, X.","Xu, P.","Yang, T.","Yang, X.","Yang, H.","Yang, J.","Yang, H.","Yang, G.","Yao, H.","Ye, X.","Yin, C.","Young-Moxon, B.","Yu, J.","Yue, X.","Zhang, S.","Zhang, A.","Zhang, K.","Zhang, X.","Zhang, L.","Zhang, X.","Zhang, Y.","Zhang, L.","Zhang, J.","Zhang, X.","Zhang, T.","Zhao, S.","Zhao, Y.","Zhao, X.","Zhao, L.","Zheng, Y.","Zhong, L.","Zhou, C.","Zhou, X.","Zhou, F.","Zhu, H.","Zhu, J.","Zhuge, Y.","Zong, W.","Kalpathy-Cramer, J.","Farahani, K.","Davatzikos, C.","van Leemput, K.","Menze, B."],"bibdata":{"title":"Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge","type":"article","year":"2018","websites":"http://arxiv.org/abs/1811.02629","id":"9220cb01-73b4-3bb5-b1b2-7aac710a23e9","created":"2024-01-13T06:15:56.440Z","file_attached":"true","profile_id":"d5b9f595-4104-33d2-b640-e84dee1b7ded","last_modified":"2025-02-21T12:00:24.631Z","read":false,"starred":false,"authored":"true","confirmed":"true","hidden":false,"folder_uuids":"ded4b384-1a9c-491d-88dd-c5e6a88d479d","private_publication":false,"abstract":"Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset.","bibtype":"article","author":"Bakas, Spyridon and Reyes, Mauricio and Jakab, Andras and Bauer, Stefan and Rempfler, Markus and Crimi, Alessandro and Shinohara, Russell Takeshi and Berger, Christoph and Ha, Sung Min and Rozycki, Martin and Prastawa, Marcel and Alberts, Esther and Lipkova, Jana and Freymann, John and Kirby, Justin and Bilello, Michel and Fathallah-Shaykh, Hassan and Wiest, Roland and Kirschke, Jan and Wiestler, Benedikt and Colen, Rivka and Kotrotsou, Aikaterini and Lamontagne, Pamela and Marcus, Daniel and Milchenko, Mikhail and Nazeri, Arash and Weber, Marc-Andre and Mahajan, Abhishek and Baid, Ujjwal and Gerstner, Elizabeth and Kwon, Dongjin and Acharya, Gagan and Agarwal, Manu and Alam, Mahbubul and Albiol, Alberto and Albiol, Antonio and Albiol, Francisco J. and Alex, Varghese and Allinson, Nigel and Amorim, Pedro H. A. and Amrutkar, Abhijit and Anand, Ganesh and Andermatt, Simon and Arbel, Tal and Arbelaez, Pablo and Avery, Aaron and Azmat, Muneeza and B., Pranjal and Bai, W and Banerjee, Subhashis and Barth, Bill and Batchelder, Thomas and Batmanghelich, Kayhan and Battistella, Enzo and Beers, Andrew and Belyaev, Mikhail and Bendszus, Martin and Benson, Eze and Bernal, Jose and Bharath, Halandur Nagaraja and Biros, George and Bisdas, Sotirios and Brown, James and Cabezas, Mariano and Cao, Shilei and Cardoso, Jorge M. and Carver, Eric N and Casamitjana, Adrià and Castillo, Laura Silvana and Catà, Marcel and Cattin, Philippe and Cerigues, Albert and Chagas, Vinicius S. and Chandra, Siddhartha and Chang, Yi-Ju and Chang, Shiyu and Chang, Ken and Chazalon, Joseph and Chen, Shengcong and Chen, Wei and Chen, Jefferson W and Chen, Zhaolin and Cheng, Kun and Choudhury, Ahana Roy and Chylla, Roger and Clérigues, Albert and Colleman, Steven and Colmeiro, Ramiro German Rodriguez and Combalia, Marc and Costa, Anthony and Cui, Xiaomeng and Dai, Zhenzhen and Dai, Lutao and Daza, Laura Alexandra and Deutsch, Eric and Ding, Changxing and Dong, Chao and Dong, Shidu and Dudzik, Wojciech and Eaton-Rosen, Zach and Egan, Gary and Escudero, Guilherme and Estienne, Théo and Everson, Richard and Fabrizio, Jonathan and Fan, Yong and Fang, Longwei and Feng, Xue and Ferrante, Enzo and Fidon, Lucas and Fischer, Martin and French, Andrew P. and Fridman, Naomi and Fu, Huan and Fuentes, David and Gao, Yaozong and Gates, Evan and Gering, David and Gholami, Amir and Gierke, Willi and Glocker, Ben and Gong, Mingming and González-Villá, Sandra and Grosges, T. and Guan, Yuanfang and Guo, Sheng and Gupta, Sudeep and Han, Woo-Sup and Han, Il Song and Harmuth, Konstantin and He, Huiguang and Hernández-Sabaté, Aura and Herrmann, Evelyn and Himthani, Naveen and Hsu, Winston and Hsu, Cheyu and Hu, Xiaojun and Hu, Xiaobin and Hu, Yan and Hu, Yifan and Hua, Rui and Huang, Teng-Yi and Huang, Weilin and Van Huffel, Sabine and Huo, Quan and HV, Vivek and Iftekharuddin, Khan M. and Isensee, Fabian and Islam, Mobarakol and Jackson, Aaron S. and Jambawalikar, Sachin R. and Jesson, Andrew and Jian, Weijian and Jin, Peter and Jose, V Jeya Maria and Jungo, Alain and Kainz, B and Kamnitsas, Konstantinos and Kao, Po-Yu and Karnawat, Ayush and Kellermeier, Thomas and Kermi, Adel and Keutzer, Kurt and Khadir, Mohamed Tarek and Khened, Mahendra and Kickingereder, Philipp and Kim, Geena and King, Nik and Knapp, Haley and Knecht, Urspeter and Kohli, Lisa and Kong, Deren and Kong, Xiangmao and Koppers, Simon and Kori, Avinash and Krishnamurthi, Ganapathy and Krivov, Egor and Kumar, Piyush and Kushibar, Kaisar and Lachinov, Dmitrii and Lambrou, Tryphon and Lee, Joon and Lee, Chengen and Lee, Yuehchou and Lee, M and Lefkovits, Szidonia and Lefkovits, Laszlo and Levitt, James and Li, Tengfei and Li, Hongwei and Li, Wenqi and Li, Hongyang and Li, Xiaochuan and Li, Yuexiang and Li, Heng and Li, Zhenye and Li, Xiaoyu and Li, Zeju and Li, XiaoGang and Li, Wenqi and Lin, Zheng-Shen and Lin, Fengming and Lio, Pietro and Liu, Chang and Liu, Boqiang and Liu, Xiang and Liu, Mingyuan and Liu, Ju and Liu, Luyan and Llado, Xavier and Lopez, Marc Moreno and Lorenzo, Pablo Ribalta and Lu, Zhentai and Luo, Lin and Luo, Zhigang and Ma, Jun and Ma, Kai and Mackie, Thomas and Madabushi, Anant and Mahmoudi, Issam and Maier-Hein, Klaus H. and Maji, Pradipta and Mammen, CP and Mang, Andreas and Manjunath, B. S. and Marcinkiewicz, Michal and McDonagh, S and McKenna, Stephen and McKinley, Richard and Mehl, Miriam and Mehta, Sachin and Mehta, Raghav and Meier, Raphael and Meinel, Christoph and Merhof, Dorit and Meyer, Craig and Miller, Robert and Mitra, Sushmita and Moiyadi, Aliasgar and Molina-Garcia, David and Monteiro, Miguel A. B. and Mrukwa, Grzegorz and Myronenko, Andriy and Nalepa, Jakub and Ngo, Thuyen and Nie, Dong and Ning, Holly and Niu, Chen and Nuechterlein, Nicholas K and Oermann, Eric and Oliveira, Arlindo and Oliveira, Diego D. C. and Oliver, Arnau and Osman, Alexander F. I. and Ou, Yu-Nian and Ourselin, Sebastien and Paragios, Nikos and Park, Moo Sung and Paschke, Brad and Pauloski, J. Gregory and Pawar, Kamlesh and Pawlowski, Nick and Pei, Linmin and Peng, Suting and Pereira, Silvio M. and Perez-Beteta, Julian and Perez-Garcia, Victor M. and Pezold, Simon and Pham, Bao and Phophalia, Ashish and Piella, Gemma and Pillai, G. N. and Piraud, Marie and Pisov, Maxim and Popli, Anmol and Pound, Michael P. and Pourreza, Reza and Prasanna, Prateek and Prkovska, Vesna and Pridmore, Tony P. and Puch, Santi and Puybareau, Élodie and Qian, Buyue and Qiao, Xu and Rajchl, Martin and Rane, Swapnil and Rebsamen, Michael and Ren, Hongliang and Ren, Xuhua and Revanuru, Karthik and Rezaei, Mina and Rippel, Oliver and Rivera, Luis Carlos and Robert, Charlotte and Rosen, Bruce and Rueckert, Daniel and Safwan, Mohammed and Salem, Mostafa and Salvi, Joaquim and Sanchez, Irina and Sánchez, Irina and Santos, Heitor M. and Sartor, Emmett and Schellingerhout, Dawid and Scheufele, Klaudius and Scott, Matthew R. and Scussel, Artur A. and Sedlar, Sara and Serrano-Rubio, Juan Pablo and Shah, N. Jon and Shah, Nameetha and Shaikh, Mazhar and Shankar, B. Uma and Shboul, Zeina and Shen, Haipeng and Shen, Dinggang and Shen, Linlin and Shen, Haocheng and Shenoy, Varun and Shi, Feng and Shin, Hyung Eun and Shu, Hai and Sima, Diana and Sinclair, M and Smedby, Orjan and Snyder, James M. and Soltaninejad, Mohammadreza and Song, Guidong and Soni, Mehul and Stawiaski, Jean and Subramanian, Shashank and Sun, Li and Sun, Roger and Sun, Jiawei and Sun, Kay and Sun, Yu and Sun, Guoxia and Sun, Shuang and Suter, Yannick R and Szilagyi, Laszlo and Talbar, Sanjay and Tao, Dacheng and Tao, Dacheng and Teng, Zhongzhao and Thakur, Siddhesh and Thakur, Meenakshi H and Tharakan, Sameer and Tiwari, Pallavi and Tochon, Guillaume and Tran, Tuan and Tsai, Yuhsiang M. and Tseng, Kuan-Lun and Tuan, Tran Anh and Turlapov, Vadim and Tustison, Nicholas and Vakalopoulou, Maria and Valverde, Sergi and Vanguri, Rami and Vasiliev, Evgeny and Ventura, Jonathan and Vera, Luis and Vercauteren, Tom and Verrastro, C. A. and Vidyaratne, Lasitha and Vilaplana, Veronica and Vivekanandan, Ajeet and Wang, Guotai and Wang, Qian and Wang, Chiatse J. and Wang, Weichung and Wang, Duo and Wang, Ruixuan and Wang, Yuanyuan and Wang, Chunliang and Wang, Guotai and Wen, Ning and Wen, Xin and Weninger, Leon and Wick, Wolfgang and Wu, Shaocheng and Wu, Qiang and Wu, Yihong and Xia, Yong and Xu, Yanwu and Xu, Xiaowen and Xu, Peiyuan and Yang, Tsai-Ling and Yang, Xiaoping and Yang, Hao-Yu and Yang, Junlin and Yang, Haojin and Yang, Guang and Yao, Hongdou and Ye, Xujiong and Yin, Changchang and Young-Moxon, Brett and Yu, Jinhua and Yue, Xiangyu and Zhang, Songtao and Zhang, Angela and Zhang, Kun and Zhang, Xuejie and Zhang, Lichi and Zhang, Xiaoyue and Zhang, Yazhuo and Zhang, Lei and Zhang, Jianguo and Zhang, Xiang and Zhang, Tianhao and Zhao, Sicheng and Zhao, Yu and Zhao, Xiaomei and Zhao, Liang and Zheng, Yefeng and Zhong, Liming and Zhou, Chenhong and Zhou, Xiaobing and Zhou, Fan and Zhu, Hongtu and Zhu, Jin and Zhuge, Ying and Zong, Weiwei and Kalpathy-Cramer, Jayashree and Farahani, Keyvan and Davatzikos, Christos and van Leemput, Koen and Menze, Bjoern","journal":"arXiv preprint arXiv:1811.02629","bibtex":"@article{\n title = {Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge},\n type = {article},\n year = {2018},\n websites = {http://arxiv.org/abs/1811.02629},\n id = {9220cb01-73b4-3bb5-b1b2-7aac710a23e9},\n created = {2024-01-13T06:15:56.440Z},\n file_attached = {true},\n profile_id = {d5b9f595-4104-33d2-b640-e84dee1b7ded},\n last_modified = {2025-02-21T12:00:24.631Z},\n read = {false},\n starred = {false},\n authored = {true},\n confirmed = {true},\n hidden = {false},\n folder_uuids = {ded4b384-1a9c-491d-88dd-c5e6a88d479d},\n private_publication = {false},\n abstract = {Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset.},\n bibtype = {article},\n author = {Bakas, Spyridon and Reyes, Mauricio and Jakab, Andras and Bauer, Stefan and Rempfler, Markus and Crimi, Alessandro and Shinohara, Russell Takeshi and Berger, Christoph and Ha, Sung Min and Rozycki, Martin and Prastawa, Marcel and Alberts, Esther and Lipkova, Jana and Freymann, John and Kirby, Justin and Bilello, Michel and Fathallah-Shaykh, Hassan and Wiest, Roland and Kirschke, Jan and Wiestler, Benedikt and Colen, Rivka and Kotrotsou, Aikaterini and Lamontagne, Pamela and Marcus, Daniel and Milchenko, Mikhail and Nazeri, Arash and Weber, Marc-Andre and Mahajan, Abhishek and Baid, Ujjwal and Gerstner, Elizabeth and Kwon, Dongjin and Acharya, Gagan and Agarwal, Manu and Alam, Mahbubul and Albiol, Alberto and Albiol, Antonio and Albiol, Francisco J. and Alex, Varghese and Allinson, Nigel and Amorim, Pedro H. A. and Amrutkar, Abhijit and Anand, Ganesh and Andermatt, Simon and Arbel, Tal and Arbelaez, Pablo and Avery, Aaron and Azmat, Muneeza and B., Pranjal and Bai, W and Banerjee, Subhashis and Barth, Bill and Batchelder, Thomas and Batmanghelich, Kayhan and Battistella, Enzo and Beers, Andrew and Belyaev, Mikhail and Bendszus, Martin and Benson, Eze and Bernal, Jose and Bharath, Halandur Nagaraja and Biros, George and Bisdas, Sotirios and Brown, James and Cabezas, Mariano and Cao, Shilei and Cardoso, Jorge M. and Carver, Eric N and Casamitjana, Adrià and Castillo, Laura Silvana and Catà, Marcel and Cattin, Philippe and Cerigues, Albert and Chagas, Vinicius S. and Chandra, Siddhartha and Chang, Yi-Ju and Chang, Shiyu and Chang, Ken and Chazalon, Joseph and Chen, Shengcong and Chen, Wei and Chen, Jefferson W and Chen, Zhaolin and Cheng, Kun and Choudhury, Ahana Roy and Chylla, Roger and Clérigues, Albert and Colleman, Steven and Colmeiro, Ramiro German Rodriguez and Combalia, Marc and Costa, Anthony and Cui, Xiaomeng and Dai, Zhenzhen and Dai, Lutao and Daza, Laura Alexandra and Deutsch, Eric and Ding, Changxing and Dong, Chao and Dong, Shidu and Dudzik, Wojciech and Eaton-Rosen, Zach and Egan, Gary and Escudero, Guilherme and Estienne, Théo and Everson, Richard and Fabrizio, Jonathan and Fan, Yong and Fang, Longwei and Feng, Xue and Ferrante, Enzo and Fidon, Lucas and Fischer, Martin and French, Andrew P. and Fridman, Naomi and Fu, Huan and Fuentes, David and Gao, Yaozong and Gates, Evan and Gering, David and Gholami, Amir and Gierke, Willi and Glocker, Ben and Gong, Mingming and González-Villá, Sandra and Grosges, T. and Guan, Yuanfang and Guo, Sheng and Gupta, Sudeep and Han, Woo-Sup and Han, Il Song and Harmuth, Konstantin and He, Huiguang and Hernández-Sabaté, Aura and Herrmann, Evelyn and Himthani, Naveen and Hsu, Winston and Hsu, Cheyu and Hu, Xiaojun and Hu, Xiaobin and Hu, Yan and Hu, Yifan and Hua, Rui and Huang, Teng-Yi and Huang, Weilin and Van Huffel, Sabine and Huo, Quan and HV, Vivek and Iftekharuddin, Khan M. and Isensee, Fabian and Islam, Mobarakol and Jackson, Aaron S. and Jambawalikar, Sachin R. and Jesson, Andrew and Jian, Weijian and Jin, Peter and Jose, V Jeya Maria and Jungo, Alain and Kainz, B and Kamnitsas, Konstantinos and Kao, Po-Yu and Karnawat, Ayush and Kellermeier, Thomas and Kermi, Adel and Keutzer, Kurt and Khadir, Mohamed Tarek and Khened, Mahendra and Kickingereder, Philipp and Kim, Geena and King, Nik and Knapp, Haley and Knecht, Urspeter and Kohli, Lisa and Kong, Deren and Kong, Xiangmao and Koppers, Simon and Kori, Avinash and Krishnamurthi, Ganapathy and Krivov, Egor and Kumar, Piyush and Kushibar, Kaisar and Lachinov, Dmitrii and Lambrou, Tryphon and Lee, Joon and Lee, Chengen and Lee, Yuehchou and Lee, M and Lefkovits, Szidonia and Lefkovits, Laszlo and Levitt, James and Li, Tengfei and Li, Hongwei and Li, Wenqi and Li, Hongyang and Li, Xiaochuan and Li, Yuexiang and Li, Heng and Li, Zhenye and Li, Xiaoyu and Li, Zeju and Li, XiaoGang and Li, Wenqi and Lin, Zheng-Shen and Lin, Fengming and Lio, Pietro and Liu, Chang and Liu, Boqiang and Liu, Xiang and Liu, Mingyuan and Liu, Ju and Liu, Luyan and Llado, Xavier and Lopez, Marc Moreno and Lorenzo, Pablo Ribalta and Lu, Zhentai and Luo, Lin and Luo, Zhigang and Ma, Jun and Ma, Kai and Mackie, Thomas and Madabushi, Anant and Mahmoudi, Issam and Maier-Hein, Klaus H. and Maji, Pradipta and Mammen, CP and Mang, Andreas and Manjunath, B. S. and Marcinkiewicz, Michal and McDonagh, S and McKenna, Stephen and McKinley, Richard and Mehl, Miriam and Mehta, Sachin and Mehta, Raghav and Meier, Raphael and Meinel, Christoph and Merhof, Dorit and Meyer, Craig and Miller, Robert and Mitra, Sushmita and Moiyadi, Aliasgar and Molina-Garcia, David and Monteiro, Miguel A. B. and Mrukwa, Grzegorz and Myronenko, Andriy and Nalepa, Jakub and Ngo, Thuyen and Nie, Dong and Ning, Holly and Niu, Chen and Nuechterlein, Nicholas K and Oermann, Eric and Oliveira, Arlindo and Oliveira, Diego D. C. and Oliver, Arnau and Osman, Alexander F. I. and Ou, Yu-Nian and Ourselin, Sebastien and Paragios, Nikos and Park, Moo Sung and Paschke, Brad and Pauloski, J. Gregory and Pawar, Kamlesh and Pawlowski, Nick and Pei, Linmin and Peng, Suting and Pereira, Silvio M. and Perez-Beteta, Julian and Perez-Garcia, Victor M. and Pezold, Simon and Pham, Bao and Phophalia, Ashish and Piella, Gemma and Pillai, G. N. and Piraud, Marie and Pisov, Maxim and Popli, Anmol and Pound, Michael P. and Pourreza, Reza and Prasanna, Prateek and Prkovska, Vesna and Pridmore, Tony P. and Puch, Santi and Puybareau, Élodie and Qian, Buyue and Qiao, Xu and Rajchl, Martin and Rane, Swapnil and Rebsamen, Michael and Ren, Hongliang and Ren, Xuhua and Revanuru, Karthik and Rezaei, Mina and Rippel, Oliver and Rivera, Luis Carlos and Robert, Charlotte and Rosen, Bruce and Rueckert, Daniel and Safwan, Mohammed and Salem, Mostafa and Salvi, Joaquim and Sanchez, Irina and Sánchez, Irina and Santos, Heitor M. and Sartor, Emmett and Schellingerhout, Dawid and Scheufele, Klaudius and Scott, Matthew R. and Scussel, Artur A. and Sedlar, Sara and Serrano-Rubio, Juan Pablo and Shah, N. Jon and Shah, Nameetha and Shaikh, Mazhar and Shankar, B. Uma and Shboul, Zeina and Shen, Haipeng and Shen, Dinggang and Shen, Linlin and Shen, Haocheng and Shenoy, Varun and Shi, Feng and Shin, Hyung Eun and Shu, Hai and Sima, Diana and Sinclair, M and Smedby, Orjan and Snyder, James M. and Soltaninejad, Mohammadreza and Song, Guidong and Soni, Mehul and Stawiaski, Jean and Subramanian, Shashank and Sun, Li and Sun, Roger and Sun, Jiawei and Sun, Kay and Sun, Yu and Sun, Guoxia and Sun, Shuang and Suter, Yannick R and Szilagyi, Laszlo and Talbar, Sanjay and Tao, Dacheng and Tao, Dacheng and Teng, Zhongzhao and Thakur, Siddhesh and Thakur, Meenakshi H and Tharakan, Sameer and Tiwari, Pallavi and Tochon, Guillaume and Tran, Tuan and Tsai, Yuhsiang M. and Tseng, Kuan-Lun and Tuan, Tran Anh and Turlapov, Vadim and Tustison, Nicholas and Vakalopoulou, Maria and Valverde, Sergi and Vanguri, Rami and Vasiliev, Evgeny and Ventura, Jonathan and Vera, Luis and Vercauteren, Tom and Verrastro, C. A. and Vidyaratne, Lasitha and Vilaplana, Veronica and Vivekanandan, Ajeet and Wang, Guotai and Wang, Qian and Wang, Chiatse J. and Wang, Weichung and Wang, Duo and Wang, Ruixuan and Wang, Yuanyuan and Wang, Chunliang and Wang, Guotai and Wen, Ning and Wen, Xin and Weninger, Leon and Wick, Wolfgang and Wu, Shaocheng and Wu, Qiang and Wu, Yihong and Xia, Yong and Xu, Yanwu and Xu, Xiaowen and Xu, Peiyuan and Yang, Tsai-Ling and Yang, Xiaoping and Yang, Hao-Yu and Yang, Junlin and Yang, Haojin and Yang, Guang and Yao, Hongdou and Ye, Xujiong and Yin, Changchang and Young-Moxon, Brett and Yu, Jinhua and Yue, Xiangyu and Zhang, Songtao and Zhang, Angela and Zhang, Kun and Zhang, Xuejie and Zhang, Lichi and Zhang, Xiaoyue and Zhang, Yazhuo and Zhang, Lei and Zhang, Jianguo and Zhang, Xiang and Zhang, Tianhao and Zhao, Sicheng and Zhao, Yu and Zhao, Xiaomei and Zhao, Liang and Zheng, Yefeng and Zhong, Liming and Zhou, Chenhong and Zhou, Xiaobing and Zhou, Fan and Zhu, Hongtu and Zhu, Jin and Zhuge, Ying and Zong, Weiwei and Kalpathy-Cramer, Jayashree and Farahani, Keyvan and Davatzikos, Christos and van Leemput, Koen and Menze, Bjoern},\n journal = {arXiv preprint arXiv:1811.02629}\n}","author_short":["Bakas, S.","Reyes, M.","Jakab, A.","Bauer, S.","Rempfler, M.","Crimi, A.","Shinohara, R., T.","Berger, C.","Ha, S., M.","Rozycki, M.","Prastawa, M.","Alberts, E.","Lipkova, J.","Freymann, J.","Kirby, J.","Bilello, M.","Fathallah-Shaykh, H.","Wiest, R.","Kirschke, J.","Wiestler, B.","Colen, R.","Kotrotsou, A.","Lamontagne, P.","Marcus, D.","Milchenko, M.","Nazeri, A.","Weber, M.","Mahajan, A.","Baid, U.","Gerstner, E.","Kwon, D.","Acharya, G.","Agarwal, M.","Alam, M.","Albiol, A.","Albiol, A.","Albiol, F., J.","Alex, V.","Allinson, N.","Amorim, P., H., A.","Amrutkar, A.","Anand, G.","Andermatt, S.","Arbel, T.","Arbelaez, P.","Avery, A.","Azmat, M.","B., P.","Bai, W.","Banerjee, S.","Barth, B.","Batchelder, T.","Batmanghelich, K.","Battistella, E.","Beers, A.","Belyaev, M.","Bendszus, M.","Benson, E.","Bernal, J.","Bharath, H., N.","Biros, G.","Bisdas, S.","Brown, J.","Cabezas, M.","Cao, S.","Cardoso, J., M.","Carver, E., N.","Casamitjana, A.","Castillo, L., S.","Catà, M.","Cattin, P.","Cerigues, A.","Chagas, V., S.","Chandra, S.","Chang, Y.","Chang, S.","Chang, K.","Chazalon, J.","Chen, S.","Chen, W.","Chen, J., W.","Chen, Z.","Cheng, K.","Choudhury, A., R.","Chylla, R.","Clérigues, A.","Colleman, S.","Colmeiro, R., G., R.","Combalia, M.","Costa, A.","Cui, X.","Dai, Z.","Dai, L.","Daza, L., A.","Deutsch, E.","Ding, C.","Dong, C.","Dong, S.","Dudzik, W.","Eaton-Rosen, Z.","Egan, G.","Escudero, G.","Estienne, T.","Everson, R.","Fabrizio, J.","Fan, Y.","Fang, L.","Feng, X.","Ferrante, E.","Fidon, L.","Fischer, M.","French, A., P.","Fridman, N.","Fu, H.","Fuentes, D.","Gao, Y.","Gates, E.","Gering, D.","Gholami, A.","Gierke, W.","Glocker, B.","Gong, M.","González-Villá, S.","Grosges, T.","Guan, Y.","Guo, S.","Gupta, S.","Han, W.","Han, I., S.","Harmuth, K.","He, H.","Hernández-Sabaté, A.","Herrmann, E.","Himthani, N.","Hsu, W.","Hsu, C.","Hu, X.","Hu, X.","Hu, Y.","Hu, Y.","Hua, R.","Huang, T.","Huang, W.","Van Huffel, S.","Huo, Q.","HV, V.","Iftekharuddin, K., M.","Isensee, F.","Islam, M.","Jackson, A., S.","Jambawalikar, S., R.","Jesson, A.","Jian, W.","Jin, P.","Jose, V., J., M.","Jungo, A.","Kainz, B.","Kamnitsas, K.","Kao, P.","Karnawat, A.","Kellermeier, T.","Kermi, A.","Keutzer, K.","Khadir, M., T.","Khened, M.","Kickingereder, P.","Kim, G.","King, N.","Knapp, H.","Knecht, U.","Kohli, L.","Kong, D.","Kong, X.","Koppers, S.","Kori, A.","Krishnamurthi, G.","Krivov, E.","Kumar, P.","Kushibar, K.","Lachinov, D.","Lambrou, T.","Lee, J.","Lee, C.","Lee, Y.","Lee, M.","Lefkovits, S.","Lefkovits, L.","Levitt, J.","Li, T.","Li, H.","Li, W.","Li, H.","Li, X.","Li, Y.","Li, H.","Li, Z.","Li, X.","Li, Z.","Li, X.","Li, W.","Lin, Z.","Lin, F.","Lio, P.","Liu, C.","Liu, B.","Liu, X.","Liu, M.","Liu, J.","Liu, L.","Llado, X.","Lopez, M., M.","Lorenzo, P., R.","Lu, Z.","Luo, L.","Luo, Z.","Ma, J.","Ma, K.","Mackie, T.","Madabushi, A.","Mahmoudi, I.","Maier-Hein, K., H.","Maji, P.","Mammen, C.","Mang, A.","Manjunath, B., S.","Marcinkiewicz, M.","McDonagh, S.","McKenna, S.","McKinley, R.","Mehl, M.","Mehta, S.","Mehta, R.","Meier, R.","Meinel, C.","Merhof, D.","Meyer, C.","Miller, R.","Mitra, S.","Moiyadi, A.","Molina-Garcia, D.","Monteiro, M., A., B.","Mrukwa, G.","Myronenko, A.","Nalepa, J.","Ngo, T.","Nie, D.","Ning, H.","Niu, C.","Nuechterlein, N., K.","Oermann, E.","Oliveira, A.","Oliveira, D., D., C.","Oliver, A.","Osman, A., F., I.","Ou, Y.","Ourselin, S.","Paragios, N.","Park, M., S.","Paschke, B.","Pauloski, J., G.","Pawar, K.","Pawlowski, N.","Pei, L.","Peng, S.","Pereira, S., M.","Perez-Beteta, J.","Perez-Garcia, V., M.","Pezold, S.","Pham, B.","Phophalia, A.","Piella, G.","Pillai, G., N.","Piraud, M.","Pisov, M.","Popli, A.","Pound, M., P.","Pourreza, R.","Prasanna, P.","Prkovska, V.","Pridmore, T., P.","Puch, S.","Puybareau, É.","Qian, B.","Qiao, X.","Rajchl, M.","Rane, S.","Rebsamen, M.","Ren, H.","Ren, X.","Revanuru, K.","Rezaei, M.","Rippel, O.","Rivera, L., C.","Robert, C.","Rosen, B.","Rueckert, D.","Safwan, M.","Salem, M.","Salvi, J.","Sanchez, I.","Sánchez, I.","Santos, H., M.","Sartor, E.","Schellingerhout, D.","Scheufele, K.","Scott, M., R.","Scussel, A., A.","Sedlar, S.","Serrano-Rubio, J., P.","Shah, N., J.","Shah, N.","Shaikh, M.","Shankar, B., U.","Shboul, Z.","Shen, H.","Shen, D.","Shen, L.","Shen, H.","Shenoy, V.","Shi, F.","Shin, H., E.","Shu, H.","Sima, D.","Sinclair, M.","Smedby, O.","Snyder, J., M.","Soltaninejad, M.","Song, G.","Soni, M.","Stawiaski, J.","Subramanian, S.","Sun, L.","Sun, R.","Sun, J.","Sun, K.","Sun, Y.","Sun, G.","Sun, S.","Suter, Y., R.","Szilagyi, L.","Talbar, S.","Tao, D.","Tao, D.","Teng, Z.","Thakur, S.","Thakur, M., H.","Tharakan, S.","Tiwari, P.","Tochon, G.","Tran, T.","Tsai, Y., M.","Tseng, K.","Tuan, T., A.","Turlapov, V.","Tustison, N.","Vakalopoulou, M.","Valverde, S.","Vanguri, R.","Vasiliev, E.","Ventura, J.","Vera, L.","Vercauteren, T.","Verrastro, C., A.","Vidyaratne, L.","Vilaplana, V.","Vivekanandan, A.","Wang, G.","Wang, Q.","Wang, C., J.","Wang, W.","Wang, D.","Wang, R.","Wang, Y.","Wang, C.","Wang, G.","Wen, N.","Wen, X.","Weninger, L.","Wick, W.","Wu, S.","Wu, Q.","Wu, Y.","Xia, Y.","Xu, Y.","Xu, X.","Xu, P.","Yang, T.","Yang, X.","Yang, H.","Yang, J.","Yang, H.","Yang, G.","Yao, H.","Ye, X.","Yin, C.","Young-Moxon, B.","Yu, J.","Yue, X.","Zhang, S.","Zhang, A.","Zhang, K.","Zhang, X.","Zhang, L.","Zhang, X.","Zhang, Y.","Zhang, L.","Zhang, J.","Zhang, X.","Zhang, T.","Zhao, S.","Zhao, Y.","Zhao, X.","Zhao, L.","Zheng, Y.","Zhong, L.","Zhou, C.","Zhou, X.","Zhou, F.","Zhu, H.","Zhu, J.","Zhuge, Y.","Zong, W.","Kalpathy-Cramer, J.","Farahani, K.","Davatzikos, C.","van Leemput, K.","Menze, B."],"urls":{"Paper":"https://bibbase.org/service/mendeley/d5b9f595-4104-33d2-b640-e84dee1b7ded/file/0c00cf4c-2020-2b55-0948-d612fced54a3/181102629.pdf.pdf","Website":"http://arxiv.org/abs/1811.02629"},"biburl":"https://bibbase.org/service/mendeley/d5b9f595-4104-33d2-b640-e84dee1b7ded","bibbaseid":"bakas-reyes-jakab-bauer-rempfler-crimi-shinohara-berger-etal-identifyingthebestmachinelearningalgorithmsforbraintumorsegmentationprogressionassessmentandoverallsurvivalpredictioninthebratschallenge-2018","role":"author","metadata":{"authorlinks":{}}},"bibtype":"article","biburl":"https://bibbase.org/service/mendeley/d5b9f595-4104-33d2-b640-e84dee1b7ded","dataSources":["gAn9J6MigCMGCCiWS","72sbP7JvDHh2s2BS5","24HHt9wBKj7iWteZ8","TnwXBzRTGFZiqLEo7","KwZEPNyaK9oGiWy4x","dLbFQTpL9sj9DtWyw","2252seNhipfTmjEBQ"],"keywords":[],"search_terms":["identifying","best","machine","learning","algorithms","brain","tumor","segmentation","progression","assessment","overall","survival","prediction","brats","challenge","bakas","reyes","jakab","bauer","rempfler","crimi","shinohara","berger","ha","rozycki","prastawa","alberts","lipkova","freymann","kirby","bilello","fathallah-shaykh","wiest","kirschke","wiestler","colen","kotrotsou","lamontagne","marcus","milchenko","nazeri","weber","mahajan","baid","gerstner","kwon","acharya","agarwal","alam","albiol","albiol","albiol","alex","allinson","amorim","amrutkar","anand","andermatt","arbel","arbelaez","avery","azmat","b.","bai","banerjee","barth","batchelder","batmanghelich","battistella","beers","belyaev","bendszus","benson","bernal","bharath","biros","bisdas","brown","cabezas","cao","cardoso","carver","casamitjana","castillo","catà","cattin","cerigues","chagas","chandra","chang","chang","chang","chazalon","chen","chen","chen","chen","cheng","choudhury","chylla","clérigues","colleman","colmeiro","combalia","costa","cui","dai","dai","daza","deutsch","ding","dong","dong","dudzik","eaton-rosen","egan","escudero","estienne","everson","fabrizio","fan","fang","feng","ferrante","fidon","fischer","french","fridman","fu","fuentes","gao","gates","gering","gholami","gierke","glocker","gong","gonzález-villá","grosges","guan","guo","gupta","han","han","harmuth","he","hernández-sabaté","herrmann","himthani","hsu","hsu","hu","hu","hu","hu","hua","huang","huang","van huffel","huo","hv","iftekharuddin","isensee","islam","jackson","jambawalikar","jesson","jian","jin","jose","jungo","kainz","kamnitsas","kao","karnawat","kellermeier","kermi","keutzer","khadir","khened","kickingereder","kim","king","knapp","knecht","kohli","kong","kong","koppers","kori","krishnamurthi","krivov","kumar","kushibar","lachinov","lambrou","lee","lee","lee","lee","lefkovits","lefkovits","levitt","li","li","li","li","li","li","li","li","li","li","li","li","lin","lin","lio","liu","liu","liu","liu","liu","liu","llado","lopez","lorenzo","lu","luo","luo","ma","ma","mackie","madabushi","mahmoudi","maier-hein","maji","mammen","mang","manjunath","marcinkiewicz","mcdonagh","mckenna","mckinley","mehl","mehta","mehta","meier","meinel","merhof","meyer","miller","mitra","moiyadi","molina-garcia","monteiro","mrukwa","myronenko","nalepa","ngo","nie","ning","niu","nuechterlein","oermann","oliveira","oliveira","oliver","osman","ou","ourselin","paragios","park","paschke","pauloski","pawar","pawlowski","pei","peng","pereira","perez-beteta","perez-garcia","pezold","pham","phophalia","piella","pillai","piraud","pisov","popli","pound","pourreza","prasanna","prkovska","pridmore","puch","puybareau","qian","qiao","rajchl","rane","rebsamen","ren","ren","revanuru","rezaei","rippel","rivera","robert","rosen","rueckert","safwan","salem","salvi","sanchez","sánchez","santos","sartor","schellingerhout","scheufele","scott","scussel","sedlar","serrano-rubio","shah","shah","shaikh","shankar","shboul","shen","shen","shen","shen","shenoy","shi","shin","shu","sima","sinclair","smedby","snyder","soltaninejad","song","soni","stawiaski","subramanian","sun","sun","sun","sun","sun","sun","sun","suter","szilagyi","talbar","tao","tao","teng","thakur","thakur","tharakan","tiwari","tochon","tran","tsai","tseng","tuan","turlapov","tustison","vakalopoulou","valverde","vanguri","vasiliev","ventura","vera","vercauteren","verrastro","vidyaratne","vilaplana","vivekanandan","wang","wang","wang","wang","wang","wang","wang","wang","wang","wen","wen","weninger","wick","wu","wu","wu","xia","xu","xu","xu","yang","yang","yang","yang","yang","yang","yao","ye","yin","young-moxon","yu","yue","zhang","zhang","zhang","zhang","zhang","zhang","zhang","zhang","zhang","zhang","zhang","zhao","zhao","zhao","zhao","zheng","zhong","zhou","zhou","zhou","zhu","zhu","zhuge","zong","kalpathy-cramer","farahani","davatzikos","van leemput","menze"],"title":"Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge","year":2018}