NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference

NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference. Bellot, P., Olsen, C., Salembier, P., Oliveras-Vergés, A., & Meyer, P. E BMC Bioinformatics, 16(1):312, September, 2015.

Paper doi abstract bibtex

In the last decade, a great number of methods for reconstructing gene regulatory networks from expression data have been proposed. However, very few tools and datasets allow to evaluate accurately and reproducibly those methods. Hence, we propose here a new tool, able to perform a systematic, yet fully reproducible, evaluation of transcriptional network inference methods.

@article{bellot_netbenchmark:_2015,
	title = {{NetBenchmark}: a bioconductor package for reproducible benchmarks of gene regulatory network inference},
	volume = {16},
	url = {http://www.biomedcentral.com/1471-2105/16/312},
	doi = {10.1186/s12859-015-0728-4},
	abstract = {In the last decade, a great number of methods for reconstructing gene regulatory networks from expression data have been proposed. However, very few tools and datasets allow to evaluate accurately and reproducibly those methods. Hence, we propose here a new tool, able to perform a systematic, yet fully reproducible, evaluation of transcriptional network inference methods.},
	language = {English},
	number = {1},
	journal = {BMC Bioinformatics},
	author = {Bellot, Pau and Olsen, Catharina and Salembier, Philippe and Oliveras-Vergés, Albert and Meyer, Patrick E},
	month = sep,
	year = {2015},
	pages = {312},
}

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