@article{berka_moleonline_2012,
	title = {{MOLEonline} 2.0: interactive web-based analysis of biomacromolecular channels},
	volume = {40},
	issn = {0305-1048, 1362-4962},
	shorttitle = {{MOLEonline} 2.0},
	url = {http://nar.oxfordjournals.org.gate1.inist.fr/content/40/W1/W222},
	doi = {10.1093/nar/gks363},
	abstract = {Biomolecular channels play important roles in many biological systems, e.g. enzymes, ribosomes and ion channels. This article introduces a web-based interactive MOLEonline 2.0 application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties. The users can tune advanced parameters when performing a channel search to direct the search according to their needs. The MOLEonline 2.0 application is freely available via the Internet at http://ncbr.muni.cz/mole or http://mole.upol.cz.},
	language = {en},
	number = {W1},
	urldate = {2015-11-30},
	journal = {Nucleic Acids Research},
	author = {Berka, Karel and Hanák, Ondřej and Sehnal, David and Banáš, Pavel and Navrátilová, Veronika and Jaiswal, Deepti and Ionescu, Crina-Maria and Vařeková, Radka Svobodová and Koča, Jaroslav and Otyepka, Michal},
	month = jul,
	year = {2012},
	pmid = {22553366},
	pages = {W222--W227},
}

{"_id":"eemFguYJd5Ag7Mta9","bibbaseid":"berka-hank-sehnal-ban-navrtilov-jaiswal-ionescu-vaekov-etal-moleonline20interactivewebbasedanalysisofbiomacromolecularchannels-2012","author_short":["Berka, K.","Hanák, O.","Sehnal, D.","Banáš, P.","Navrátilová, V.","Jaiswal, D.","Ionescu, C.","Vařeková, R. S.","Koča, J.","Otyepka, M."],"bibdata":{"bibtype":"article","type":"article","title":"MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels","volume":"40","issn":"0305-1048, 1362-4962","shorttitle":"MOLEonline 2.0","url":"http://nar.oxfordjournals.org.gate1.inist.fr/content/40/W1/W222","doi":"10.1093/nar/gks363","abstract":"Biomolecular channels play important roles in many biological systems, e.g. enzymes, ribosomes and ion channels. This article introduces a web-based interactive MOLEonline 2.0 application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties. The users can tune advanced parameters when performing a channel search to direct the search according to their needs. The MOLEonline 2.0 application is freely available via the Internet at http://ncbr.muni.cz/mole or http://mole.upol.cz.","language":"en","number":"W1","urldate":"2015-11-30","journal":"Nucleic Acids Research","author":[{"propositions":[],"lastnames":["Berka"],"firstnames":["Karel"],"suffixes":[]},{"propositions":[],"lastnames":["Hanák"],"firstnames":["Ondřej"],"suffixes":[]},{"propositions":[],"lastnames":["Sehnal"],"firstnames":["David"],"suffixes":[]},{"propositions":[],"lastnames":["Banáš"],"firstnames":["Pavel"],"suffixes":[]},{"propositions":[],"lastnames":["Navrátilová"],"firstnames":["Veronika"],"suffixes":[]},{"propositions":[],"lastnames":["Jaiswal"],"firstnames":["Deepti"],"suffixes":[]},{"propositions":[],"lastnames":["Ionescu"],"firstnames":["Crina-Maria"],"suffixes":[]},{"propositions":[],"lastnames":["Vařeková"],"firstnames":["Radka","Svobodová"],"suffixes":[]},{"propositions":[],"lastnames":["Koča"],"firstnames":["Jaroslav"],"suffixes":[]},{"propositions":[],"lastnames":["Otyepka"],"firstnames":["Michal"],"suffixes":[]}],"month":"July","year":"2012","pmid":"22553366","pages":"W222–W227","bibtex":"@article{berka_moleonline_2012,\n\ttitle = {{MOLEonline} 2.0: interactive web-based analysis of biomacromolecular channels},\n\tvolume = {40},\n\tissn = {0305-1048, 1362-4962},\n\tshorttitle = {{MOLEonline} 2.0},\n\turl = {http://nar.oxfordjournals.org.gate1.inist.fr/content/40/W1/W222},\n\tdoi = {10.1093/nar/gks363},\n\tabstract = {Biomolecular channels play important roles in many biological systems, e.g. enzymes, ribosomes and ion channels. This article introduces a web-based interactive MOLEonline 2.0 application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of (bio)macromolecular channels, tunnels and pores. Results are presented in a clear manner, making their interpretation easy. For each channel, MOLEonline displays a 3D graphical representation of the channel, its profile accompanied by a list of lining residues and also its basic physicochemical properties. The users can tune advanced parameters when performing a channel search to direct the search according to their needs. The MOLEonline 2.0 application is freely available via the Internet at http://ncbr.muni.cz/mole or http://mole.upol.cz.},\n\tlanguage = {en},\n\tnumber = {W1},\n\turldate = {2015-11-30},\n\tjournal = {Nucleic Acids Research},\n\tauthor = {Berka, Karel and Hanák, Ondřej and Sehnal, David and Banáš, Pavel and Navrátilová, Veronika and Jaiswal, Deepti and Ionescu, Crina-Maria and Vařeková, Radka Svobodová and Koča, Jaroslav and Otyepka, Michal},\n\tmonth = jul,\n\tyear = {2012},\n\tpmid = {22553366},\n\tpages = {W222--W227},\n}\n\n","author_short":["Berka, K.","Hanák, O.","Sehnal, D.","Banáš, P.","Navrátilová, V.","Jaiswal, D.","Ionescu, C.","Vařeková, R. S.","Koča, J.","Otyepka, M."],"key":"berka_moleonline_2012","id":"berka_moleonline_2012","bibbaseid":"berka-hank-sehnal-ban-navrtilov-jaiswal-ionescu-vaekov-etal-moleonline20interactivewebbasedanalysisofbiomacromolecularchannels-2012","role":"author","urls":{"Paper":"http://nar.oxfordjournals.org.gate1.inist.fr/content/40/W1/W222"},"metadata":{"authorlinks":{}}},"bibtype":"article","biburl":"https://bibbase.org/zotero/adrienthurotte","dataSources":["MQg4y2ke6Pj8nXrzF"],"keywords":[],"search_terms":["moleonline","interactive","web","based","analysis","biomacromolecular","channels","berka","hanák","sehnal","banáš","navrátilová","jaiswal","ionescu","vařeková","koča","otyepka"],"title":"MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels","year":2012}