Online dictionary learning for single-subject fMRI data unmixing. Bhanot, A., Meillier, C., Heitz, F., & Harsan, L. In 2019 27th European Signal Processing Conference (EUSIPCO), pages 1-5, Sep., 2019.
Paper doi abstract bibtex Independent component analysis (ICA) and dictionary learning (DL) methods are widely used to analyse resting state functional Magnetic Resonance Imaging (rs-fMRI) in multi-subject studies. These methods aim at decomposing the multi-subject data into common spatial abundance maps and their related temporal signatures. We are interested here in such a decomposition for a single-subject rs-fMRI dataset. The above-mentioned methods often fail in this case because the problem becomes too ill-posed, requiring the use of additional prior information and the design of novel regularising constraints. The poor resolution of rs-fMRI data is an additional source of difficulty, yielding noisy and blurry spatial maps. In this paper, we propose a new DL formulation adapted to the unique subject by integrating high-resolution (HR) spatial information to constrain single-subject data unmixing. HR information is provided by the registration of an anatomical atlas on the data set. We show on a quasi-real dataset from mice, the benefit of using an HR spatial segmentation map in the decomposition of low-resolution rs-fMRI.
@InProceedings{8902991,
author = {A. Bhanot and C. Meillier and F. Heitz and L. Harsan},
booktitle = {2019 27th European Signal Processing Conference (EUSIPCO)},
title = {Online dictionary learning for single-subject fMRI data unmixing},
year = {2019},
pages = {1-5},
abstract = {Independent component analysis (ICA) and dictionary learning (DL) methods are widely used to analyse resting state functional Magnetic Resonance Imaging (rs-fMRI) in multi-subject studies. These methods aim at decomposing the multi-subject data into common spatial abundance maps and their related temporal signatures. We are interested here in such a decomposition for a single-subject rs-fMRI dataset. The above-mentioned methods often fail in this case because the problem becomes too ill-posed, requiring the use of additional prior information and the design of novel regularising constraints. The poor resolution of rs-fMRI data is an additional source of difficulty, yielding noisy and blurry spatial maps. In this paper, we propose a new DL formulation adapted to the unique subject by integrating high-resolution (HR) spatial information to constrain single-subject data unmixing. HR information is provided by the registration of an anatomical atlas on the data set. We show on a quasi-real dataset from mice, the benefit of using an HR spatial segmentation map in the decomposition of low-resolution rs-fMRI.},
keywords = {biomedical MRI;brain;image segmentation;independent component analysis;medical image processing;neurophysiology;functional magnetic resonance imaging;multisubject data;related temporal signatures;single-subject rs-fMRI dataset;noisy maps;blurry spatial maps;high-resolution spatial information;HR spatial segmentation map;low-resolution rs-fMRI;spatial abundance maps;online dictionary learning;single-subject fMRI data unmixing;independent component analysis;Functional magnetic resonance imaging;Spatial resolution;Signal processing algorithms;Estimation;Mice;Sparse matrices;Dictionary Learning;resting state fMRI;single-subject rs-fMRI unmixing;high-resolution anatomical atlas},
doi = {10.23919/EUSIPCO.2019.8902991},
issn = {2076-1465},
month = {Sep.},
url = {https://www.eurasip.org/proceedings/eusipco/eusipco2019/proceedings/papers/1570532678.pdf},
}
Downloads: 0
{"_id":"sujAkYaHMzfmRcKLZ","bibbaseid":"bhanot-meillier-heitz-harsan-onlinedictionarylearningforsinglesubjectfmridataunmixing-2019","authorIDs":[],"author_short":["Bhanot, A.","Meillier, C.","Heitz, F.","Harsan, L."],"bibdata":{"bibtype":"inproceedings","type":"inproceedings","author":[{"firstnames":["A."],"propositions":[],"lastnames":["Bhanot"],"suffixes":[]},{"firstnames":["C."],"propositions":[],"lastnames":["Meillier"],"suffixes":[]},{"firstnames":["F."],"propositions":[],"lastnames":["Heitz"],"suffixes":[]},{"firstnames":["L."],"propositions":[],"lastnames":["Harsan"],"suffixes":[]}],"booktitle":"2019 27th European Signal Processing Conference (EUSIPCO)","title":"Online dictionary learning for single-subject fMRI data unmixing","year":"2019","pages":"1-5","abstract":"Independent component analysis (ICA) and dictionary learning (DL) methods are widely used to analyse resting state functional Magnetic Resonance Imaging (rs-fMRI) in multi-subject studies. These methods aim at decomposing the multi-subject data into common spatial abundance maps and their related temporal signatures. We are interested here in such a decomposition for a single-subject rs-fMRI dataset. The above-mentioned methods often fail in this case because the problem becomes too ill-posed, requiring the use of additional prior information and the design of novel regularising constraints. The poor resolution of rs-fMRI data is an additional source of difficulty, yielding noisy and blurry spatial maps. In this paper, we propose a new DL formulation adapted to the unique subject by integrating high-resolution (HR) spatial information to constrain single-subject data unmixing. HR information is provided by the registration of an anatomical atlas on the data set. We show on a quasi-real dataset from mice, the benefit of using an HR spatial segmentation map in the decomposition of low-resolution rs-fMRI.","keywords":"biomedical MRI;brain;image segmentation;independent component analysis;medical image processing;neurophysiology;functional magnetic resonance imaging;multisubject data;related temporal signatures;single-subject rs-fMRI dataset;noisy maps;blurry spatial maps;high-resolution spatial information;HR spatial segmentation map;low-resolution rs-fMRI;spatial abundance maps;online dictionary learning;single-subject fMRI data unmixing;independent component analysis;Functional magnetic resonance imaging;Spatial resolution;Signal processing algorithms;Estimation;Mice;Sparse matrices;Dictionary Learning;resting state fMRI;single-subject rs-fMRI unmixing;high-resolution anatomical atlas","doi":"10.23919/EUSIPCO.2019.8902991","issn":"2076-1465","month":"Sep.","url":"https://www.eurasip.org/proceedings/eusipco/eusipco2019/proceedings/papers/1570532678.pdf","bibtex":"@InProceedings{8902991,\n author = {A. Bhanot and C. Meillier and F. Heitz and L. Harsan},\n booktitle = {2019 27th European Signal Processing Conference (EUSIPCO)},\n title = {Online dictionary learning for single-subject fMRI data unmixing},\n year = {2019},\n pages = {1-5},\n abstract = {Independent component analysis (ICA) and dictionary learning (DL) methods are widely used to analyse resting state functional Magnetic Resonance Imaging (rs-fMRI) in multi-subject studies. These methods aim at decomposing the multi-subject data into common spatial abundance maps and their related temporal signatures. We are interested here in such a decomposition for a single-subject rs-fMRI dataset. The above-mentioned methods often fail in this case because the problem becomes too ill-posed, requiring the use of additional prior information and the design of novel regularising constraints. The poor resolution of rs-fMRI data is an additional source of difficulty, yielding noisy and blurry spatial maps. In this paper, we propose a new DL formulation adapted to the unique subject by integrating high-resolution (HR) spatial information to constrain single-subject data unmixing. HR information is provided by the registration of an anatomical atlas on the data set. We show on a quasi-real dataset from mice, the benefit of using an HR spatial segmentation map in the decomposition of low-resolution rs-fMRI.},\n keywords = {biomedical MRI;brain;image segmentation;independent component analysis;medical image processing;neurophysiology;functional magnetic resonance imaging;multisubject data;related temporal signatures;single-subject rs-fMRI dataset;noisy maps;blurry spatial maps;high-resolution spatial information;HR spatial segmentation map;low-resolution rs-fMRI;spatial abundance maps;online dictionary learning;single-subject fMRI data unmixing;independent component analysis;Functional magnetic resonance imaging;Spatial resolution;Signal processing algorithms;Estimation;Mice;Sparse matrices;Dictionary Learning;resting state fMRI;single-subject rs-fMRI unmixing;high-resolution anatomical atlas},\n doi = {10.23919/EUSIPCO.2019.8902991},\n issn = {2076-1465},\n month = {Sep.},\n url = {https://www.eurasip.org/proceedings/eusipco/eusipco2019/proceedings/papers/1570532678.pdf},\n}\n\n","author_short":["Bhanot, A.","Meillier, C.","Heitz, F.","Harsan, L."],"key":"8902991","id":"8902991","bibbaseid":"bhanot-meillier-heitz-harsan-onlinedictionarylearningforsinglesubjectfmridataunmixing-2019","role":"author","urls":{"Paper":"https://www.eurasip.org/proceedings/eusipco/eusipco2019/proceedings/papers/1570532678.pdf"},"keyword":["biomedical MRI;brain;image segmentation;independent component analysis;medical image processing;neurophysiology;functional magnetic resonance imaging;multisubject data;related temporal signatures;single-subject rs-fMRI dataset;noisy maps;blurry spatial maps;high-resolution spatial information;HR spatial segmentation map;low-resolution rs-fMRI;spatial abundance maps;online dictionary learning;single-subject fMRI data unmixing;independent component analysis;Functional magnetic resonance imaging;Spatial resolution;Signal processing algorithms;Estimation;Mice;Sparse matrices;Dictionary Learning;resting state fMRI;single-subject rs-fMRI unmixing;high-resolution anatomical atlas"],"metadata":{"authorlinks":{}},"downloads":0},"bibtype":"inproceedings","biburl":"https://raw.githubusercontent.com/Roznn/EUSIPCO/main/eusipco2019url.bib","creationDate":"2021-02-11T19:15:22.083Z","downloads":0,"keywords":["biomedical mri;brain;image segmentation;independent component analysis;medical image processing;neurophysiology;functional magnetic resonance imaging;multisubject data;related temporal signatures;single-subject rs-fmri dataset;noisy maps;blurry spatial maps;high-resolution spatial information;hr spatial segmentation map;low-resolution rs-fmri;spatial abundance maps;online dictionary learning;single-subject fmri data unmixing;independent component analysis;functional magnetic resonance imaging;spatial resolution;signal processing algorithms;estimation;mice;sparse matrices;dictionary learning;resting state fmri;single-subject rs-fmri unmixing;high-resolution anatomical atlas"],"search_terms":["online","dictionary","learning","single","subject","fmri","data","unmixing","bhanot","meillier","heitz","harsan"],"title":"Online dictionary learning for single-subject fMRI data unmixing","year":2019,"dataSources":["NqWTiMfRR56v86wRs","r6oz3cMyC99QfiuHW"]}