@article{bigler_diatoms_2002,
	title = {Diatoms as indicators of climatic and limnological change in {Swedish} {Lapland}: a 100-lake calibration set and its validation for paleoecological reconstructions},
	volume = {27},
	issn = {0921-2728, 1573-0417},
	shorttitle = {Diatoms as indicators of climatic and limnological change in {Swedish} {Lapland}},
	url = {http://link.springer.com/article/10.1023/A:1013562325326},
	doi = {10.1023/A:1013562325326},
	abstract = {This study investigated the distribution of subfossil diatom assemblages in surficial sediments of 100 lakes along steep ecological and climatic gradients in northernmost Sweden (Abisko region, 67.07° N to 68.48° N latitude, 17.67° E to 23.52° E longitude) to develop and cross-validate transfer functions for paleoenvironmental reconstruction. Of 19 environmental variables determined for each site, 15 were included in the statistical analysis. Lake-water pH (8.0\%), sedimentary loss-on-ignition (LOI, 5.9\% and estimated mean July air temperature (July T, 4.8\%) explained the greatest amounts of variation in the distribution of diatom taxa among the 100 lakes. Temperature and pH optima and tolerances were calculated for abundant taxa. Transfer functions, based on WA-PLS (weighted averaging partial least squares), were developed for pH (r2 = 0.77, root-mean-square-error of prediction (RMSEP) = 0.19 pH units, maximum bias = 0.31, as assessed by leave-one-out cross-validation) based on 99 lakes and for July T (r2 = 0.75, RMSEP = 0.96 °C, max. bias = 1.37 °C) based on the full 100 lake set. We subsequently assessed the ability of the diatom transfer functions to estimate lake-water pH and July T using a form of independent cross-validation. To do this, the 100-lake set was divided in two subsets. An 85-lake training-set (based on single limnological measurements) was used to develop transfer functions with similar performance as those based on the full 100 lakes, and a 15-lake test-set (with 2 years of monthly limnological measurements throughout the ice-free seasons) was used to test the transfer functions developed from the 85-lake training-set. Results from the intra-set cross-validation exercise demonstrated that lake-specific prediction errors (RMSEP) for the 15-lake test-set corresponded closely with the median measured values (pH) and the estimations based on spatial interpolations of data from weather stations (July T). The prediction errors associated with diatom inferences were usually within the range of seasonal and interannual variability. Overall, our results confirm that diatoms can provide reliable and robust estimates of lake-water pH and July T, that WA-PLS is a robust calibration method and that long-term environmental data are needed for further improvement of paleolimnological transfer functions.},
	language = {en},
	number = {1},
	urldate = {2017-02-07},
	journal = {Journal of Paleolimnology},
	author = {Bigler, Christian and Hall, Roland I.},
	month = jan,
	year = {2002},
	keywords = {\#nosource, Hydrobiology, Lake sediments, Northern Fennoscandia, Physical Geography, Sedimentology, abisko, climate change, diatoms, intra-set cross-validation, pH, temperature, training-set, transfer functions, weighted averaging partial least squares regression (WA-PLS)},
	pages = {97--115},
}

{"_id":"8QSe7ytY7h97wTjsD","bibbaseid":"bigler-hall-diatomsasindicatorsofclimaticandlimnologicalchangeinswedishlaplanda100lakecalibrationsetanditsvalidationforpaleoecologicalreconstructions-2002","author_short":["Bigler, C.","Hall, R. I."],"bibdata":{"bibtype":"article","type":"article","title":"Diatoms as indicators of climatic and limnological change in Swedish Lapland: a 100-lake calibration set and its validation for paleoecological reconstructions","volume":"27","issn":"0921-2728, 1573-0417","shorttitle":"Diatoms as indicators of climatic and limnological change in Swedish Lapland","url":"http://link.springer.com/article/10.1023/A:1013562325326","doi":"10.1023/A:1013562325326","abstract":"This study investigated the distribution of subfossil diatom assemblages in surficial sediments of 100 lakes along steep ecological and climatic gradients in northernmost Sweden (Abisko region, 67.07° N to 68.48° N latitude, 17.67° E to 23.52° E longitude) to develop and cross-validate transfer functions for paleoenvironmental reconstruction. Of 19 environmental variables determined for each site, 15 were included in the statistical analysis. Lake-water pH (8.0%), sedimentary loss-on-ignition (LOI, 5.9% and estimated mean July air temperature (July T, 4.8%) explained the greatest amounts of variation in the distribution of diatom taxa among the 100 lakes. Temperature and pH optima and tolerances were calculated for abundant taxa. Transfer functions, based on WA-PLS (weighted averaging partial least squares), were developed for pH (r2 = 0.77, root-mean-square-error of prediction (RMSEP) = 0.19 pH units, maximum bias = 0.31, as assessed by leave-one-out cross-validation) based on 99 lakes and for July T (r2 = 0.75, RMSEP = 0.96 °C, max. bias = 1.37 °C) based on the full 100 lake set. We subsequently assessed the ability of the diatom transfer functions to estimate lake-water pH and July T using a form of independent cross-validation. To do this, the 100-lake set was divided in two subsets. An 85-lake training-set (based on single limnological measurements) was used to develop transfer functions with similar performance as those based on the full 100 lakes, and a 15-lake test-set (with 2 years of monthly limnological measurements throughout the ice-free seasons) was used to test the transfer functions developed from the 85-lake training-set. Results from the intra-set cross-validation exercise demonstrated that lake-specific prediction errors (RMSEP) for the 15-lake test-set corresponded closely with the median measured values (pH) and the estimations based on spatial interpolations of data from weather stations (July T). The prediction errors associated with diatom inferences were usually within the range of seasonal and interannual variability. Overall, our results confirm that diatoms can provide reliable and robust estimates of lake-water pH and July T, that WA-PLS is a robust calibration method and that long-term environmental data are needed for further improvement of paleolimnological transfer functions.","language":"en","number":"1","urldate":"2017-02-07","journal":"Journal of Paleolimnology","author":[{"propositions":[],"lastnames":["Bigler"],"firstnames":["Christian"],"suffixes":[]},{"propositions":[],"lastnames":["Hall"],"firstnames":["Roland","I."],"suffixes":[]}],"month":"January","year":"2002","keywords":"#nosource, Hydrobiology, Lake sediments, Northern Fennoscandia, Physical Geography, Sedimentology, abisko, climate change, diatoms, intra-set cross-validation, pH, temperature, training-set, transfer functions, weighted averaging partial least squares regression (WA-PLS)","pages":"97–115","bibtex":"@article{bigler_diatoms_2002,\n\ttitle = {Diatoms as indicators of climatic and limnological change in {Swedish} {Lapland}: a 100-lake calibration set and its validation for paleoecological reconstructions},\n\tvolume = {27},\n\tissn = {0921-2728, 1573-0417},\n\tshorttitle = {Diatoms as indicators of climatic and limnological change in {Swedish} {Lapland}},\n\turl = {http://link.springer.com/article/10.1023/A:1013562325326},\n\tdoi = {10.1023/A:1013562325326},\n\tabstract = {This study investigated the distribution of subfossil diatom assemblages in surficial sediments of 100 lakes along steep ecological and climatic gradients in northernmost Sweden (Abisko region, 67.07° N to 68.48° N latitude, 17.67° E to 23.52° E longitude) to develop and cross-validate transfer functions for paleoenvironmental reconstruction. Of 19 environmental variables determined for each site, 15 were included in the statistical analysis. Lake-water pH (8.0\\%), sedimentary loss-on-ignition (LOI, 5.9\\% and estimated mean July air temperature (July T, 4.8\\%) explained the greatest amounts of variation in the distribution of diatom taxa among the 100 lakes. Temperature and pH optima and tolerances were calculated for abundant taxa. Transfer functions, based on WA-PLS (weighted averaging partial least squares), were developed for pH (r2 = 0.77, root-mean-square-error of prediction (RMSEP) = 0.19 pH units, maximum bias = 0.31, as assessed by leave-one-out cross-validation) based on 99 lakes and for July T (r2 = 0.75, RMSEP = 0.96 °C, max. bias = 1.37 °C) based on the full 100 lake set. We subsequently assessed the ability of the diatom transfer functions to estimate lake-water pH and July T using a form of independent cross-validation. To do this, the 100-lake set was divided in two subsets. An 85-lake training-set (based on single limnological measurements) was used to develop transfer functions with similar performance as those based on the full 100 lakes, and a 15-lake test-set (with 2 years of monthly limnological measurements throughout the ice-free seasons) was used to test the transfer functions developed from the 85-lake training-set. Results from the intra-set cross-validation exercise demonstrated that lake-specific prediction errors (RMSEP) for the 15-lake test-set corresponded closely with the median measured values (pH) and the estimations based on spatial interpolations of data from weather stations (July T). The prediction errors associated with diatom inferences were usually within the range of seasonal and interannual variability. Overall, our results confirm that diatoms can provide reliable and robust estimates of lake-water pH and July T, that WA-PLS is a robust calibration method and that long-term environmental data are needed for further improvement of paleolimnological transfer functions.},\n\tlanguage = {en},\n\tnumber = {1},\n\turldate = {2017-02-07},\n\tjournal = {Journal of Paleolimnology},\n\tauthor = {Bigler, Christian and Hall, Roland I.},\n\tmonth = jan,\n\tyear = {2002},\n\tkeywords = {\\#nosource, Hydrobiology, Lake sediments, Northern Fennoscandia, Physical Geography, Sedimentology, abisko, climate change, diatoms, intra-set cross-validation, pH, temperature, training-set, transfer functions, weighted averaging partial least squares regression (WA-PLS)},\n\tpages = {97--115},\n}\n\n\n\n","author_short":["Bigler, C.","Hall, R. 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