Elements of a stochastic 3D prediction engine in larval zebrafish prey capture. Bolton, A. D., Haesemeyer, M., Jordi, J., Schaechtle, U., Saad, F. A., Mansinghka, V. K., Tenenbaum, J. B., & Engert, F. eLife, 8:e51975, eLife Sciences Publications, Ltd, November, 2019.
Link abstract bibtex 7 downloads The computational principles underlying predictive capabilities in animals are poorly understood. Here, we wondered whether predictive models mediating prey capture could be reduced to a simple set of sensorimotor rules performed by a primitive organism. For this task, we chose the larval zebrafish, a tractable vertebrate that pursues and captures swimming microbes. Using a novel naturalistic 3D setup, we show that the zebrafish combines position and velocity perception to construct a future positional estimate of its prey, indicating an ability to project trajectories forward in time. Importantly, the stochasticity in the fish's sensorimotor transformations provides a considerable advantage over equivalent noise-free strategies. This surprising result coalesces with recent findings that illustrate the benefits of biological stochasticity to adaptive behavior. In sum, our study reveals that zebrafish are equipped with a recursive prey capture algorithm, built up from simple stochastic rules, that embodies an implicit predictive model of the world.
@article {bolton2019zebra,
title = {Elements of a stochastic {3D} prediction engine in larval zebrafish prey capture},
author = {Bolton, Andrew D. and Haesemeyer, Martin and Jordi, Joshua and Schaechtle, Ulrich and Saad, Feras A. and Mansinghka, Vikash K. and Tenenbaum, Joshua B. and Engert, Florian},
editor = {Berman, Gordon J},
volume = 8,
year = 2019,
month = nov,
pages = {e51975},
journal = {eLife},
fdoi = {10.7554/eLife.51975},
url_link = {https://doi.org/10.7554/eLife.51975},
abstract = {The computational principles underlying predictive capabilities in animals are poorly understood. Here, we wondered whether predictive models mediating prey capture could be reduced to a simple set of sensorimotor rules performed by a primitive organism. For this task, we chose the larval zebrafish, a tractable vertebrate that pursues and captures swimming microbes. Using a novel naturalistic 3D setup, we show that the zebrafish combines position and velocity perception to construct a future positional estimate of its prey, indicating an ability to project trajectories forward in time. Importantly, the stochasticity in the fish's sensorimotor transformations provides a considerable advantage over equivalent noise-free strategies. This surprising result coalesces with recent findings that illustrate the benefits of biological stochasticity to adaptive behavior. In sum, our study reveals that zebrafish are equipped with a recursive prey capture algorithm, built up from simple stochastic rules, that embodies an implicit predictive model of the world.},
publisher = {eLife Sciences Publications, Ltd},
}
Downloads: 7
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D.","Haesemeyer, M.","Jordi, J.","Schaechtle, U.","Saad, F. A.","Mansinghka, V. K.","Tenenbaum, J. B.","Engert, F."],"bibdata":{"bibtype":"article","type":"article","title":"Elements of a stochastic 3D prediction engine in larval zebrafish prey capture","author":[{"propositions":[],"lastnames":["Bolton"],"firstnames":["Andrew","D."],"suffixes":[]},{"propositions":[],"lastnames":["Haesemeyer"],"firstnames":["Martin"],"suffixes":[]},{"propositions":[],"lastnames":["Jordi"],"firstnames":["Joshua"],"suffixes":[]},{"propositions":[],"lastnames":["Schaechtle"],"firstnames":["Ulrich"],"suffixes":[]},{"propositions":[],"lastnames":["Saad"],"firstnames":["Feras","A."],"suffixes":[]},{"propositions":[],"lastnames":["Mansinghka"],"firstnames":["Vikash","K."],"suffixes":[]},{"propositions":[],"lastnames":["Tenenbaum"],"firstnames":["Joshua","B."],"suffixes":[]},{"propositions":[],"lastnames":["Engert"],"firstnames":["Florian"],"suffixes":[]}],"editor":[{"propositions":[],"lastnames":["Berman"],"firstnames":["Gordon","J"],"suffixes":[]}],"volume":"8","year":"2019","month":"November","pages":"e51975","journal":"eLife","fdoi":"10.7554/eLife.51975","url_link":"https://doi.org/10.7554/eLife.51975","abstract":"The computational principles underlying predictive capabilities in animals are poorly understood. Here, we wondered whether predictive models mediating prey capture could be reduced to a simple set of sensorimotor rules performed by a primitive organism. For this task, we chose the larval zebrafish, a tractable vertebrate that pursues and captures swimming microbes. Using a novel naturalistic 3D setup, we show that the zebrafish combines position and velocity perception to construct a future positional estimate of its prey, indicating an ability to project trajectories forward in time. Importantly, the stochasticity in the fish's sensorimotor transformations provides a considerable advantage over equivalent noise-free strategies. This surprising result coalesces with recent findings that illustrate the benefits of biological stochasticity to adaptive behavior. In sum, our study reveals that zebrafish are equipped with a recursive prey capture algorithm, built up from simple stochastic rules, that embodies an implicit predictive model of the world.","publisher":"eLife Sciences Publications, Ltd","bibtex":"@article {bolton2019zebra,\ntitle = {Elements of a stochastic {3D} prediction engine in larval zebrafish prey capture},\nauthor = {Bolton, Andrew D. and Haesemeyer, Martin and Jordi, Joshua and Schaechtle, Ulrich and Saad, Feras A. and Mansinghka, Vikash K. and Tenenbaum, Joshua B. and Engert, Florian},\neditor = {Berman, Gordon J},\nvolume = 8,\nyear = 2019,\nmonth = nov,\npages = {e51975},\njournal = {eLife},\nfdoi = {10.7554/eLife.51975},\nurl_link = {https://doi.org/10.7554/eLife.51975},\nabstract = {The computational principles underlying predictive capabilities in animals are poorly understood. Here, we wondered whether predictive models mediating prey capture could be reduced to a simple set of sensorimotor rules performed by a primitive organism. For this task, we chose the larval zebrafish, a tractable vertebrate that pursues and captures swimming microbes. Using a novel naturalistic 3D setup, we show that the zebrafish combines position and velocity perception to construct a future positional estimate of its prey, indicating an ability to project trajectories forward in time. Importantly, the stochasticity in the fish's sensorimotor transformations provides a considerable advantage over equivalent noise-free strategies. This surprising result coalesces with recent findings that illustrate the benefits of biological stochasticity to adaptive behavior. In sum, our study reveals that zebrafish are equipped with a recursive prey capture algorithm, built up from simple stochastic rules, that embodies an implicit predictive model of the world.},\npublisher = {eLife Sciences Publications, Ltd},\n}\n\n","author_short":["Bolton, A. D.","Haesemeyer, M.","Jordi, J.","Schaechtle, U.","Saad, F. A.","Mansinghka, V. K.","Tenenbaum, J. B.","Engert, F."],"editor_short":["Berman, G. J"],"key":"bolton2019zebra","id":"bolton2019zebra","bibbaseid":"bolton-haesemeyer-jordi-schaechtle-saad-mansinghka-tenenbaum-engert-elementsofastochastic3dpredictionengineinlarvalzebrafishpreycapture-2019","role":"author","urls":{" link":"https://doi.org/10.7554/eLife.51975"},"metadata":{"authorlinks":{"mansinghka, v":"http://probcomp.csail.mit.edu/","saad, f":"http://fsaad.mit.edu/"}},"downloads":7},"bibtype":"article","biburl":"probcomp.csail.mit.edu/papers.bib","creationDate":"2019-12-10T18:34:11.748Z","downloads":7,"keywords":[],"search_terms":["elements","stochastic","prediction","engine","larval","zebrafish","prey","capture","bolton","haesemeyer","jordi","schaechtle","saad","mansinghka","tenenbaum","engert"],"title":"Elements of a stochastic 3D prediction engine in larval zebrafish prey capture","year":2019,"dataSources":["KjwPBikSY3GLxsjaT","PGvySWpKSvwM9TdfF"]}