@article{bouyssie_hdx-viewer_2019,
	title = {{HDX}-{Viewer}: interactive {3D} visualization of hydrogen–deuterium exchange data},
	volume = {35},
	issn = {1367-4803, 1460-2059},
	shorttitle = {{HDX}-{Viewer}},
	url = {https://academic.oup.com/bioinformatics/article/35/24/5331/5530164},
	doi = {10.1093/bioinformatics/btz550},
	abstract = {Abstract
            
              Summary
              With the advent of fully automated sample preparation robots for Hydrogen–Deuterium eXchange coupled to Mass Spectrometry (HDX-MS), this method has become paramount for ligand binding or epitope mapping screening, both in academic research and biopharmaceutical industries. However, bridging the gap between commercial HDX-MS software (for raw data interpretation) and molecular viewers (to map experiment results onto a 3D structure for biological interpretation) remains laborious and requires simple but sometimes limiting coding skills. We solved this bottleneck by developing HDX-Viewer, an open-source web-based application that facilitates and quickens HDX-MS data analysis. This user-friendly application automatically incorporates HDX-MS data from a custom template or commercial HDX-MS software in PDB files, and uploads them to an online 3D molecular viewer, thereby facilitating their visualization and biological interpretation.
            
            
              Availability and implementation
              The HDX-Viewer web application is released under the CeCILL (http://www.cecill.info) and GNU LGPL licenses and can be found at https://masstools.ipbs.fr/hdx-viewer. The source code is available at https://github.com/david-bouyssie/hdx-viewer.},
	language = {en},
	number = {24},
	urldate = {2022-06-08},
	journal = {Bioinformatics},
	author = {Bouyssié, David and Lesne, Jean and Locard-Paulet, Marie and Albigot, Renaud and Burlet-Schiltz, Odile and Marcoux, Julien},
	editor = {Elofsson, Arne},
	month = dec,
	year = {2019},
	pages = {5331--5333},
}

{"_id":"egitHWnr4PGgwYNmH","bibbaseid":"bouyssi-lesne-locardpaulet-albigot-burletschiltz-marcoux-hdxviewerinteractive3dvisualizationofhydrogendeuteriumexchangedata-2019","author_short":["Bouyssié, D.","Lesne, J.","Locard-Paulet, M.","Albigot, R.","Burlet-Schiltz, O.","Marcoux, J."],"bibdata":{"bibtype":"article","type":"article","title":"HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data","volume":"35","issn":"1367-4803, 1460-2059","shorttitle":"HDX-Viewer","url":"https://academic.oup.com/bioinformatics/article/35/24/5331/5530164","doi":"10.1093/bioinformatics/btz550","abstract":"Abstract Summary With the advent of fully automated sample preparation robots for Hydrogen–Deuterium eXchange coupled to Mass Spectrometry (HDX-MS), this method has become paramount for ligand binding or epitope mapping screening, both in academic research and biopharmaceutical industries. However, bridging the gap between commercial HDX-MS software (for raw data interpretation) and molecular viewers (to map experiment results onto a 3D structure for biological interpretation) remains laborious and requires simple but sometimes limiting coding skills. We solved this bottleneck by developing HDX-Viewer, an open-source web-based application that facilitates and quickens HDX-MS data analysis. This user-friendly application automatically incorporates HDX-MS data from a custom template or commercial HDX-MS software in PDB files, and uploads them to an online 3D molecular viewer, thereby facilitating their visualization and biological interpretation. Availability and implementation The HDX-Viewer web application is released under the CeCILL (http://www.cecill.info) and GNU LGPL licenses and can be found at https://masstools.ipbs.fr/hdx-viewer. The source code is available at https://github.com/david-bouyssie/hdx-viewer.","language":"en","number":"24","urldate":"2022-06-08","journal":"Bioinformatics","author":[{"propositions":[],"lastnames":["Bouyssié"],"firstnames":["David"],"suffixes":[]},{"propositions":[],"lastnames":["Lesne"],"firstnames":["Jean"],"suffixes":[]},{"propositions":[],"lastnames":["Locard-Paulet"],"firstnames":["Marie"],"suffixes":[]},{"propositions":[],"lastnames":["Albigot"],"firstnames":["Renaud"],"suffixes":[]},{"propositions":[],"lastnames":["Burlet-Schiltz"],"firstnames":["Odile"],"suffixes":[]},{"propositions":[],"lastnames":["Marcoux"],"firstnames":["Julien"],"suffixes":[]}],"editor":[{"propositions":[],"lastnames":["Elofsson"],"firstnames":["Arne"],"suffixes":[]}],"month":"December","year":"2019","pages":"5331–5333","bibtex":"@article{bouyssie_hdx-viewer_2019,\n\ttitle = {{HDX}-{Viewer}: interactive {3D} visualization of hydrogen–deuterium exchange data},\n\tvolume = {35},\n\tissn = {1367-4803, 1460-2059},\n\tshorttitle = {{HDX}-{Viewer}},\n\turl = {https://academic.oup.com/bioinformatics/article/35/24/5331/5530164},\n\tdoi = {10.1093/bioinformatics/btz550},\n\tabstract = {Abstract\n \n Summary\n With the advent of fully automated sample preparation robots for Hydrogen–Deuterium eXchange coupled to Mass Spectrometry (HDX-MS), this method has become paramount for ligand binding or epitope mapping screening, both in academic research and biopharmaceutical industries. However, bridging the gap between commercial HDX-MS software (for raw data interpretation) and molecular viewers (to map experiment results onto a 3D structure for biological interpretation) remains laborious and requires simple but sometimes limiting coding skills. We solved this bottleneck by developing HDX-Viewer, an open-source web-based application that facilitates and quickens HDX-MS data analysis. This user-friendly application automatically incorporates HDX-MS data from a custom template or commercial HDX-MS software in PDB files, and uploads them to an online 3D molecular viewer, thereby facilitating their visualization and biological interpretation.\n \n \n Availability and implementation\n The HDX-Viewer web application is released under the CeCILL (http://www.cecill.info) and GNU LGPL licenses and can be found at https://masstools.ipbs.fr/hdx-viewer. The source code is available at https://github.com/david-bouyssie/hdx-viewer.},\n\tlanguage = {en},\n\tnumber = {24},\n\turldate = {2022-06-08},\n\tjournal = {Bioinformatics},\n\tauthor = {Bouyssié, David and Lesne, Jean and Locard-Paulet, Marie and Albigot, Renaud and Burlet-Schiltz, Odile and Marcoux, Julien},\n\teditor = {Elofsson, Arne},\n\tmonth = dec,\n\tyear = {2019},\n\tpages = {5331--5333},\n}\n\n","author_short":["Bouyssié, D.","Lesne, J.","Locard-Paulet, M.","Albigot, R.","Burlet-Schiltz, O.","Marcoux, J."],"editor_short":["Elofsson, A."],"key":"bouyssie_hdx-viewer_2019","id":"bouyssie_hdx-viewer_2019","bibbaseid":"bouyssi-lesne-locardpaulet-albigot-burletschiltz-marcoux-hdxviewerinteractive3dvisualizationofhydrogendeuteriumexchangedata-2019","role":"author","urls":{"Paper":"https://academic.oup.com/bioinformatics/article/35/24/5331/5530164"},"metadata":{"authorlinks":{}},"html":""},"bibtype":"article","biburl":"https://bibbase.org/zotero/eric.larG4","dataSources":["4i5C7S78DvJNsaHyg","5L2zM5wNE5CBYNuea"],"keywords":[],"search_terms":["hdx","viewer","interactive","visualization","hydrogen","deuterium","exchange","data","bouyssié","lesne","locard-paulet","albigot","burlet-schiltz","marcoux"],"title":"HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data","year":2019}