Patterns and ecological drivers of ocean viral communities. Brum, J., R., Ignacio-Espinoza, J., C., Roux, S., Doulcier, G., Acinas, S., G., Alberti, A., Chaffron, S., Cruaud, C., de Vargas, C., Gasol, J., M., Gorsky, G., Gregory, A., C., Guidi, L., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Poulos, B., T., Schwenck, S., M., Speich, S., Dimier, C., Kandels-Lewis, S., Picheral, M., Searson, S., Bork, P., Bowler, C., Sunagawa, S., Wincker, P., Karsenti, E., & Sullivan, M., B. Science, 348(6237):1261498-1261498, 5, 2015. abstract bibtex Viruses influence ecosystems by modulating microbial population size, diversity, metabolic outputs, and gene flow. Here we use quantitative double-stranded DNA (dsDNA) viral-fraction metagenomes (viromes) and whole viral community morphological datasets from 43 Tara Oceans expedition samples to assess viral community patterns and structure in the upper ocean. Protein cluster cataloging defined pelagic upper-ocean viral community pan and core gene sets and suggested this sequence space is well-sampled. Analyses of viral protein clusters, populations, and morphology revealed biogeographic patterns whereby viral communities were passively transported on oceanic currents and locally structured by environmental conditions that impact host community structure. Together these investigations establish a global ocean dsDNA viromic dataset with analyses supporting the seed-bank hypothesis to explain how oceanic viral communities maintain high local diversity.
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title = {Patterns and ecological drivers of ocean viral communities},
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abstract = {Viruses influence ecosystems by modulating microbial population size, diversity, metabolic outputs, and gene flow. Here we use quantitative double-stranded DNA (dsDNA) viral-fraction metagenomes (viromes) and whole viral community morphological datasets from 43 Tara Oceans expedition samples to assess viral community patterns and structure in the upper ocean. Protein cluster cataloging defined pelagic upper-ocean viral community pan and core gene sets and suggested this sequence space is well-sampled. Analyses of viral protein clusters, populations, and morphology revealed biogeographic patterns whereby viral communities were passively transported on oceanic currents and locally structured by environmental conditions that impact host community structure. Together these investigations establish a global ocean dsDNA viromic dataset with analyses supporting the seed-bank hypothesis to explain how oceanic viral communities maintain high local diversity.},
bibtype = {article},
author = {Brum, Jennifer R and Ignacio-Espinoza, J César and Roux, Simon and Doulcier, Guilhem and Acinas, Silvia G and Alberti, Adriana and Chaffron, Samuel and Cruaud, Corinne and de Vargas, Colomban and Gasol, Josep M and Gorsky, Gabriel and Gregory, Ann C and Guidi, Lionel and Hingamp, Pascal and Iudicone, Daniele and Not, Fabrice and Ogata, Hiroyuki and Pesant, Stéphane and Poulos, Bonnie T and Schwenck, Sarah M and Speich, Sabrina and Dimier, Céline and Kandels-Lewis, Stefanie and Picheral, Marc and Searson, Sarah and Bork, Peer and Bowler, Chris and Sunagawa, Shinichi and Wincker, Patrick and Karsenti, Eric and Sullivan, Matthew B},
journal = {Science},
number = {6237}
}
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