Eukaryotic plankton diversity in the sunlit ocean. De Vargas, C., Audic, S., Henry, N., Decelle, J., Mahe, F., Logares, R., Lara, E., Berney, C., Le Bescot, N., Probert, I., Carmichael, M., Poulain, J., Romac, S., Colin, S., Aury, J. M., Bittner, L., Chaffron, S., Dunthorn, M., Engelen, S., Flegontova, O., Guidi, L., Horak, A., Jaillon, O., Lima-Mendez, G., Lukes, J., Malviya, S., Morard, R., Mulot, M., Scalco, E., Siano, R., Vincent, F., Zingone, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans, C., Acinas, S. G., Bork, P., Bowler, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Raes, J., Sieracki, M. E., Speich, S., Stemmann, L., Sunagawa, S., Weissenbach, J., Wincker, P., & Karsenti, E. Science, 348(6237):1261605, 2015. de Vargas, Colomban Audic, Stephane Henry, Nicolas Decelle, Johan Mahe, Frederic Logares, Ramiro Lara, Enrique Berney, Cedric Le Bescot, Noan Probert, Ian Carmichael, Margaux Poulain, Julie Romac, Sarah Colin, Sebastien Aury, Jean-Marc Bittner, Lucie Chaffron, Samuel Dunthorn, Micah Engelen, Stefan Flegontova, Olga Guidi, Lionel Horak, Ales Jaillon, Olivier Lima-Mendez, Gipsi Lukes, Julius Malviya, Shruti Morard, Raphael Mulot, Matthieu Scalco, Eleonora Siano, Raffaele Vincent, Flora Zingone, Adriana Dimier, Celine Picheral, Marc Searson, Sarah Kandels-Lewis, Stefanie Acinas, Silvia G Bork, Peer Bowler, Chris Gorsky, Gabriel Grimsley, Nigel Hingamp, Pascal Iudicone, Daniele Not, Fabrice Ogata, Hiroyuki Pesant, Stephane Raes, Jeroen Sieracki, Michael E Speich, Sabrina Stemmann, Lars Sunagawa, Shinichi Weissenbach, Jean Wincker, Patrick Karsenti, Eric eng Dataset Research Support, Non-U.S. Gov't Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.
Paper doi abstract bibtex 25 downloads Marine plankton support global biological and geochemical processes. Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, >0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at 150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups. Diversity emerged at all taxonomic levels, both within the groups comprising the 11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies. Most eukaryotic plankton biodiversity belonged to heterotrophic protistan groups, particularly those known to be parasites or symbiotic hosts.
@article{RN29,
author = {De Vargas, C. and Audic, S. and Henry, N. and Decelle, J. and Mahe, F. and Logares, R. and Lara, E. and Berney, C. and Le Bescot, N. and Probert, I. and Carmichael, M. and Poulain, J. and Romac, S. and Colin, S. and Aury, J. M. and Bittner, L. and Chaffron, S. and Dunthorn, M. and Engelen, S. and Flegontova, O. and Guidi, L. and Horak, A. and Jaillon, O. and Lima-Mendez, G. and Lukes, J. and Malviya, S. and Morard, R. and Mulot, M. and Scalco, E. and Siano, R. and Vincent, F. and Zingone, A. and Dimier, C. and Picheral, M. and Searson, S. and Kandels-Lewis, S. and Tara Oceans, Coordinators and Acinas, S. G. and Bork, P. and Bowler, C. and Gorsky, G. and Grimsley, N. and Hingamp, P. and Iudicone, D. and Not, F. and Ogata, H. and Pesant, S. and Raes, J. and Sieracki, M. E. and Speich, S. and Stemmann, L. and Sunagawa, S. and Weissenbach, J. and Wincker, P. and Karsenti, E.},
title = {Eukaryotic plankton diversity in the sunlit ocean},
journal = {Science},
volume = {348},
number = {6237},
pages = {1261605},
note = {de Vargas, Colomban
Audic, Stephane
Henry, Nicolas
Decelle, Johan
Mahe, Frederic
Logares, Ramiro
Lara, Enrique
Berney, Cedric
Le Bescot, Noan
Probert, Ian
Carmichael, Margaux
Poulain, Julie
Romac, Sarah
Colin, Sebastien
Aury, Jean-Marc
Bittner, Lucie
Chaffron, Samuel
Dunthorn, Micah
Engelen, Stefan
Flegontova, Olga
Guidi, Lionel
Horak, Ales
Jaillon, Olivier
Lima-Mendez, Gipsi
Lukes, Julius
Malviya, Shruti
Morard, Raphael
Mulot, Matthieu
Scalco, Eleonora
Siano, Raffaele
Vincent, Flora
Zingone, Adriana
Dimier, Celine
Picheral, Marc
Searson, Sarah
Kandels-Lewis, Stefanie
Acinas, Silvia G
Bork, Peer
Bowler, Chris
Gorsky, Gabriel
Grimsley, Nigel
Hingamp, Pascal
Iudicone, Daniele
Not, Fabrice
Ogata, Hiroyuki
Pesant, Stephane
Raes, Jeroen
Sieracki, Michael E
Speich, Sabrina
Stemmann, Lars
Sunagawa, Shinichi
Weissenbach, Jean
Wincker, Patrick
Karsenti, Eric
eng
Dataset
Research Support, Non-U.S. Gov't
Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.},
abstract = {Marine plankton support global biological and geochemical processes. Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, >0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at ~150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups. Diversity emerged at all taxonomic levels, both within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies. Most eukaryotic plankton biodiversity belonged to heterotrophic protistan groups, particularly those known to be parasites or symbiotic hosts.},
keywords = {Animals
*Biodiversity
DNA Barcoding, Taxonomic
DNA, Ribosomal/genetics
Eukaryota/*classification/genetics
Oceans and Seas
Phylogeny
Plankton/*classification/genetics
Ribosomes/genetics
Sequence Analysis, DNA
Sunlight},
ISSN = {1095-9203 (Electronic)
0036-8075 (Linking)},
DOI = {10.1126/science.1261605},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25999516},
year = {2015},
type = {Journal Article}
}
Downloads: 25
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plankton diversity in the sunlit ocean","journal":"Science","volume":"348","number":"6237","pages":"1261605","note":"de Vargas, Colomban Audic, Stephane Henry, Nicolas Decelle, Johan Mahe, Frederic Logares, Ramiro Lara, Enrique Berney, Cedric Le Bescot, Noan Probert, Ian Carmichael, Margaux Poulain, Julie Romac, Sarah Colin, Sebastien Aury, Jean-Marc Bittner, Lucie Chaffron, Samuel Dunthorn, Micah Engelen, Stefan Flegontova, Olga Guidi, Lionel Horak, Ales Jaillon, Olivier Lima-Mendez, Gipsi Lukes, Julius Malviya, Shruti Morard, Raphael Mulot, Matthieu Scalco, Eleonora Siano, Raffaele Vincent, Flora Zingone, Adriana Dimier, Celine Picheral, Marc Searson, Sarah Kandels-Lewis, Stefanie Acinas, Silvia G Bork, Peer Bowler, Chris Gorsky, Gabriel Grimsley, Nigel Hingamp, Pascal Iudicone, Daniele Not, Fabrice Ogata, Hiroyuki Pesant, Stephane Raes, Jeroen Sieracki, Michael E Speich, Sabrina Stemmann, Lars Sunagawa, Shinichi Weissenbach, Jean Wincker, Patrick Karsenti, Eric eng Dataset Research 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Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, >0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at 150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups. Diversity emerged at all taxonomic levels, both within the groups comprising the 11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies. 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M. and Bittner, L. and Chaffron, S. and Dunthorn, M. and Engelen, S. and Flegontova, O. and Guidi, L. and Horak, A. and Jaillon, O. and Lima-Mendez, G. and Lukes, J. and Malviya, S. and Morard, R. and Mulot, M. and Scalco, E. and Siano, R. and Vincent, F. and Zingone, A. and Dimier, C. and Picheral, M. and Searson, S. and Kandels-Lewis, S. and Tara Oceans, Coordinators and Acinas, S. G. and Bork, P. and Bowler, C. and Gorsky, G. and Grimsley, N. and Hingamp, P. and Iudicone, D. and Not, F. and Ogata, H. and Pesant, S. and Raes, J. and Sieracki, M. E. and Speich, S. and Stemmann, L. and Sunagawa, S. and Weissenbach, J. and Wincker, P. and Karsenti, E.},\r\n title = {Eukaryotic plankton diversity in the sunlit ocean},\r\n journal = {Science},\r\n volume = {348},\r\n number = {6237},\r\n pages = {1261605},\r\n note = {de Vargas, Colomban\r\nAudic, Stephane\r\nHenry, Nicolas\r\nDecelle, Johan\r\nMahe, Frederic\r\nLogares, Ramiro\r\nLara, Enrique\r\nBerney, Cedric\r\nLe Bescot, Noan\r\nProbert, Ian\r\nCarmichael, Margaux\r\nPoulain, Julie\r\nRomac, Sarah\r\nColin, Sebastien\r\nAury, Jean-Marc\r\nBittner, Lucie\r\nChaffron, Samuel\r\nDunthorn, Micah\r\nEngelen, Stefan\r\nFlegontova, Olga\r\nGuidi, Lionel\r\nHorak, Ales\r\nJaillon, Olivier\r\nLima-Mendez, Gipsi\r\nLukes, Julius\r\nMalviya, Shruti\r\nMorard, Raphael\r\nMulot, Matthieu\r\nScalco, Eleonora\r\nSiano, Raffaele\r\nVincent, Flora\r\nZingone, Adriana\r\nDimier, Celine\r\nPicheral, Marc\r\nSearson, Sarah\r\nKandels-Lewis, Stefanie\r\nAcinas, Silvia G\r\nBork, Peer\r\nBowler, Chris\r\nGorsky, Gabriel\r\nGrimsley, Nigel\r\nHingamp, Pascal\r\nIudicone, Daniele\r\nNot, Fabrice\r\nOgata, Hiroyuki\r\nPesant, Stephane\r\nRaes, Jeroen\r\nSieracki, Michael E\r\nSpeich, Sabrina\r\nStemmann, Lars\r\nSunagawa, Shinichi\r\nWeissenbach, Jean\r\nWincker, Patrick\r\nKarsenti, Eric\r\neng\r\nDataset\r\nResearch Support, Non-U.S. Gov't\r\nScience. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.},\r\n abstract = {Marine plankton support global biological and geochemical processes. Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, >0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at ~150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups. Diversity emerged at all taxonomic levels, both within the groups comprising the ~11,200 cataloged morphospecies of eukaryotic plankton and among twice as many other deep-branching lineages of unappreciated importance in plankton ecology studies. 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