The UniProt-GO Annotation database in 2011.

The UniProt-GO Annotation database in 2011. Dimmer, E. C, Huntley, R. P, Alam-Faruque, Y., Sawford, T., O'Donovan, C., Martin, M. J, Bely, B., Browne, P., Mun Chan, W., Eberhardt, R., Gardner, M., Laiho, K., Legge, D., Magrane, M., Pichler, K., Poggioli, D., Sehra, H., Auchincloss, A., Axelsen, K., Blatter, M., Boutet, E., Braconi-Quintaje, S., Breuza, L., Bridge, A., Coudert, E., Estreicher, A., Famiglietti, L., Ferro-Rojas, S., Feuermann, M., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., James, J., Jimenez, S., Jungo, F., Keller, G., Lemercier, P., Lieberherr, D., Masson, P., Moinat, M., Pedruzzi, I., Poux, S., Rivoire, C., Roechert, B., Schneider, M., Stutz, A., Sundaram, S., Tognolli, M., Bougueleret, L., Argoud-Puy, G., Cusin, I., Duek- Roggli, P., Xenarios, I., & Apweiler, R. Nucleic Acids Research, 40(Database issue):D565–70, January, 2012.

Paper doi abstract bibtex

The GO annotation dataset provided by the UniProt Consortium (GOA: http://www.ebi.ac.uk/GOA) is a comprehensive set of evidenced-based associations between terms from the Gene Ontology resource and UniProtKB proteins. Currently supplying over 100 million annotations to 11 million proteins in more than 360,000 taxa, this resource has increased 2-fold over the last 2 years and has benefited from a wealth of checks to improve annotation correctness and consistency as well as now supplying a greater information content enabled by GO Consortium annotation format developments. Detailed, manual GO annotations obtained from the curation of peer-reviewed papers are directly contributed by all UniProt curators and supplemented with manual and electronic annotations from 36 model organism and domain-focused scientific resources. The inclusion of high-quality, automatic annotation predictions ensures the UniProt GO annotation dataset supplies functional information to a wide range of proteins, including those from poorly characterized, non-model organism species. UniProt GO annotations are freely available in a range of formats accessible by both file downloads and web-based views. In addition, the introduction of a new, normalized file format in 2010 has made for easier handling of the complete UniProt-GOA data set.

@article{dimmer_uniprot-go_2012,
	title = {The {UniProt}-{GO} {Annotation} database in 2011.},
	volume = {40},
	url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=22123736&retmode=ref&cmd=prlinks},
	doi = {10.1093/nar/gkr1048},
	abstract = {The GO annotation dataset provided by the UniProt Consortium (GOA: http://www.ebi.ac.uk/GOA) is a comprehensive set of evidenced-based associations between terms from the Gene Ontology resource and UniProtKB proteins. Currently supplying over 100 million annotations to 11 million proteins in more than 360,000 taxa, this resource has increased 2-fold over the last 2 years and has benefited from a wealth of checks to improve annotation correctness and consistency as well as now supplying a greater information content enabled by GO Consortium annotation format developments. Detailed, manual GO annotations obtained from the curation of peer-reviewed papers are directly contributed by all UniProt curators and supplemented with manual and electronic annotations from 36 model organism and domain-focused scientific resources. The inclusion of high-quality, automatic annotation predictions ensures the UniProt GO annotation dataset supplies functional information to a wide range of proteins, including those from poorly characterized, non-model organism species. UniProt GO annotations are freely available in a range of formats accessible by both file downloads and web-based views. In addition, the introduction of a new, normalized file format in 2010 has made for easier handling of the complete UniProt-GOA data set.},
	language = {English},
	number = {Database issue},
	journal = {Nucleic Acids Research},
	author = {Dimmer, Emily C and Huntley, Rachael P and Alam-Faruque, Yasmin and Sawford, Tony and O'Donovan, Claire and Martin, Maria J and Bely, Benoit and Browne, Paul and Mun Chan, Wei and Eberhardt, Ruth and Gardner, Michael and Laiho, Kati and Legge, Duncan and Magrane, Michele and Pichler, Klemens and Poggioli, Diego and Sehra, Harminder and Auchincloss, Andrea and Axelsen, Kristian and Blatter, Marie-Claude and Boutet, Emmanuel and Braconi-Quintaje, Silvia and Breuza, Lionel and Bridge, Alan and Coudert, Elizabeth and Estreicher, Anne and Famiglietti, Livia and Ferro-Rojas, Serenella and Feuermann, Marc and Gos, Arnaud and Gruaz-Gumowski, Nadine and Hinz, Ursula and Hulo, Chantal and James, Janet and Jimenez, Silvia and Jungo, Florence and Keller, Guillaume and Lemercier, Phillippe and Lieberherr, Damien and Masson, Patrick and Moinat, Madelaine and Pedruzzi, Ivo and Poux, Sylvain and Rivoire, Catherine and Roechert, Bernd and Schneider, Michael and Stutz, Andre and Sundaram, Shyamala and Tognolli, Michael and Bougueleret, Lydie and Argoud-Puy, Ghislaine and Cusin, Isabelle and Duek- Roggli, Paula and Xenarios, Ioannis and Apweiler, Rolf},
	month = jan,
	year = {2012},
	pmid = {22123736},
	pmcid = {PMC3245010},
	pages = {D565--70},
}

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