CellDesigner 3.5: a versatile modeling tool for biochemical networks. Funahashi, A., Matsuoka, Y., Jouraku, A., Morohashi, M., Kikuchi, N., & Kitano, H. Proceedings of the IEEE, 96(8):1254–1265, IEEE, 2008.
bibtex   
@article{funahashi2008celldesigner,
  title={CellDesigner 3.5: a versatile modeling tool for biochemical networks},
  author={Funahashi, Akira and Matsuoka, Yukiko and Jouraku, Akiya and Morohashi, Mineo and Kikuchi, Norihiro and Kitano, Hiroaki},
  journal={Proceedings of the IEEE},
  volume={96},
  number={8},
  pages={1254--1265},
  year={2008},
  publisher={IEEE}
}
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