The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Galdzicki, M., Clancy, K. P., Oberortner, E., Pocock, M., Quinn, J. Y., Rodriguez, C. A., Roehner, N., Wilson, M. L., Adam, L., Anderson, J. C., Bartley, B. A., Beal, J., Chandran, D., Chen, J., Densmore, D., Endy, D., Grunberg, R., Hallinan, J., Hillson, N. J., Johnson, J. D., Kuchinsky, A., Lux, M., Misirli, G., Peccoud, J., Plahar, H. A., Sirin, E., Stan, G., Villalobos, A., Wipat, A., Gennari, J. H., Myers, C. J., & Sauro, H. M. Nature Biotechnology, 32:545–550, June, 2014. doi abstract bibtex The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.
@article{galdzicki_synthetic_2014,
title = {The {Synthetic} {Biology} {Open} {Language} ({SBOL}) provides a community standard for communicating designs in synthetic biology},
volume = {32},
issn = {1087-0156},
doi = {10.1038/nbt.2891 http://www.nature.com/nbt/journal/v32/n6/abs/nbt.2891.html#supplementary-information},
abstract = {The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.},
language = {eng},
journal = {Nature Biotechnology},
author = {Galdzicki, Michal and Clancy, Kevin P. and Oberortner, Ernst and Pocock, Matthew and Quinn, Jacqueline Y. and Rodriguez, Cesar A. and Roehner, Nicholas and Wilson, Mandy L. and Adam, Laura and Anderson, J. Christopher and Bartley, Bryan A. and Beal, Jacob and Chandran, Deepak and Chen, Joanna and Densmore, Douglas and Endy, Drew and Grunberg, Raik and Hallinan, Jennifer and Hillson, Nathan J. and Johnson, Jeffrey D. and Kuchinsky, Allan and Lux, Matthew and Misirli, Goksel and Peccoud, Jean and Plahar, Hector A. and Sirin, Evren and Stan, Guy-Bart and Villalobos, Alan and Wipat, Anil and Gennari, John H. and Myers, Chris J. and Sauro, Herbert M.},
month = jun,
year = {2014},
pages = {545--550}
}
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