Molecular modeling of nucleic Acid structure: setup and analysis. Galindo-Murillo, R., Bergonzo, C., & Cheatham, T., E. Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.], 56:Unit 7.10, 1, 2014.
Molecular modeling of nucleic Acid structure: setup and analysis. [link]Website  abstract   bibtex   
The last in a set of units by the same authors, this unit addresses some important remaining questions about molecular modeling of nucleic acids. The unit describes how to choose an appropriate molecular mechanics force field; how to set up and equilibrate the system for accurate simulation of a nucleic acid in an explicit solvent by molecular dynamics or Monte Carlo simulation; and how to analyze molecular dynamics trajectories. Curr. Protoc. Nucleic Acid Chem. 56:7.10.1-7.10.21. © 2014 by John Wiley & Sons, Inc.
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 title = {Molecular modeling of nucleic Acid structure: setup and analysis.},
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 year = {2014},
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 pages = {Unit 7.10},
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 month = {1},
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 abstract = {The last in a set of units by the same authors, this unit addresses some important remaining questions about molecular modeling of nucleic acids. The unit describes how to choose an appropriate molecular mechanics force field; how to set up and equilibrate the system for accurate simulation of a nucleic acid in an explicit solvent by molecular dynamics or Monte Carlo simulation; and how to analyze molecular dynamics trajectories. Curr. Protoc. Nucleic Acid Chem. 56:7.10.1-7.10.21. © 2014 by John Wiley & Sons, Inc.},
 bibtype = {article},
 author = {Galindo-Murillo, Rodrigo and Bergonzo, Christina and Cheatham, Thomas E},
 journal = {Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.]}
}

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