Bond-Graph Modelling and Causal Analysis of Biomolecular Systems. Gawthrop, P. J. In Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems, pages 587–623. Springer International Publishing, Berlin, 2017. doi abstract bibtex Bond graph modelling of the biomolecular systems of living organisms is introduced. Molecular species are represented by non-linear C components and reactions by non-linear two-port R components. As living systems are neither at thermodynamic equilibrium nor closed, open and non-equilibrium systems are considered and illustrated using examples of biomolecular systems. Open systems are modelled using chemostats: chemical species with fixed concentration. In addition to their role in ensuring that models are energetically correct, bond graphs provide a powerful and natural way of representing and analysing causality. Causality is used in this chapter to examine the properties of the junction structures of biomolecular systems and how they relate to biomolecular concepts.
@incollection{Gaw17,
author = {Gawthrop, Peter J.},
editor = {Borutzky, Wolfgang},
title = {Bond-Graph Modelling and Causal Analysis of Biomolecular Systems},
booktitle = {Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems},
year = {2017},
publisher = {Springer International Publishing},
address = {Berlin},
pages = {587--623},
isbn = {978-3-319-47434-2},
doi = {10.1007/978-3-319-47434-2_16},
abstract = {Bond graph modelling of the biomolecular systems of living
organisms is introduced. Molecular species are
represented by non-linear C components and reactions
by non-linear two-port R components. As living
systems are neither at thermodynamic equilibrium nor
closed, open and non-equilibrium systems are
considered and illustrated using examples of
biomolecular systems. Open systems are modelled
using chemostats: chemical species with fixed
concentration. In addition to their role in ensuring
that models are energetically correct, bond graphs
provide a powerful and natural way of representing
and analysing causality. Causality is used in this
chapter to examine the properties of the junction
structures of biomolecular systems and how they
relate to biomolecular concepts.}
}
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