UTD HLTRI at TREC 2017: Precision Medicine Track. Goodwin, T. R., Skinner, M. A., & Harabagiu, S. M. In Proceedings of the 26th Text REtrieval Conference, November, 2017. Paper Slides abstract bibtex "In this paper, we describe the system designed for the TREC 2017 Precision Medicine track by the University of Texas at Dallas (UTD) Human Language Technology Research In- stitute (HLTRI). Our system incorporates an aspect-based retrieval paradigm wherein each of the four structured com- ponents of the topic is cast as a separate aspect, along with two “hidden” aspects encoding the need that retrieved docu- ments be within the domain of precision medicine and that retrieved documents have a focus on treatment. To this end, we construct knowledge graph encoding the relationships be- tween drugs, genes, and mutations. Our experiments reveal that the aspect-based approach leads to improved quality of retrieved scientific articles and clinical trials."
@InProceedings{goodwin2017utd,
title = {UTD HLTRI at TREC 2017: Precision Medicine Track},
author = {Goodwin, Travis R. and Skinner, Michael A. and Harabagiu, Sanda M.},
booktitle = {Proceedings of the 26th Text REtrieval Conference},
shortbooktitle={TREC '17},
location= {Washington, DC, USA},
year = {2017},
month = {November},
url_Paper = {papers/trec_2017_draft.pdf},
url_Slides = {papers/trec_2017_slides.pdf},
abstract={"In this paper, we describe the system designed for the TREC
2017 Precision Medicine track by the University of Texas
at Dallas (UTD) Human Language Technology Research In-
stitute (HLTRI). Our system incorporates an aspect-based
retrieval paradigm wherein each of the four structured com-
ponents of the topic is cast as a separate aspect, along with
two “hidden” aspects encoding the need that retrieved docu-
ments be within the domain of precision medicine and that
retrieved documents have a focus on treatment. To this end,
we construct knowledge graph encoding the relationships be-
tween drugs, genes, and mutations. Our experiments reveal
that the aspect-based approach leads to improved quality of
retrieved scientific articles and clinical trials."},
keywords = {precision medicine, knowledge graph, information retrieval, question answering, medical informatics}
}
Downloads: 0
{"_id":"e77cna8bScwDHfWri","bibbaseid":"goodwin-skinner-harabagiu-utdhltriattrec2017precisionmedicinetrack-2017","downloads":0,"creationDate":"2017-12-12T00:23:28.489Z","title":"UTD HLTRI at TREC 2017: Precision Medicine Track","author_short":["Goodwin, T. R.","Skinner, M. A.","Harabagiu, S. M."],"year":2017,"bibtype":"inproceedings","biburl":"http://www.hlt.utdallas.edu/~travis/publications.bib","bibdata":{"bibtype":"inproceedings","type":"inproceedings","title":"UTD HLTRI at TREC 2017: Precision Medicine Track","author":[{"propositions":[],"lastnames":["Goodwin"],"firstnames":["Travis","R."],"suffixes":[]},{"propositions":[],"lastnames":["Skinner"],"firstnames":["Michael","A."],"suffixes":[]},{"propositions":[],"lastnames":["Harabagiu"],"firstnames":["Sanda","M."],"suffixes":[]}],"booktitle":"Proceedings of the 26th Text REtrieval Conference","shortbooktitle":"TREC '17","location":"Washington, DC, USA","year":"2017","month":"November","url_paper":"papers/trec_2017_draft.pdf","url_slides":"papers/trec_2017_slides.pdf","abstract":"\"In this paper, we describe the system designed for the TREC 2017 Precision Medicine track by the University of Texas at Dallas (UTD) Human Language Technology Research In- stitute (HLTRI). Our system incorporates an aspect-based retrieval paradigm wherein each of the four structured com- ponents of the topic is cast as a separate aspect, along with two “hidden” aspects encoding the need that retrieved docu- ments be within the domain of precision medicine and that retrieved documents have a focus on treatment. To this end, we construct knowledge graph encoding the relationships be- tween drugs, genes, and mutations. Our experiments reveal that the aspect-based approach leads to improved quality of retrieved scientific articles and clinical trials.\"","keywords":"precision medicine, knowledge graph, information retrieval, question answering, medical informatics","bibtex":"@InProceedings{goodwin2017utd,\ntitle = {UTD HLTRI at TREC 2017: Precision Medicine Track},\nauthor = {Goodwin, Travis R. and Skinner, Michael A. and Harabagiu, Sanda M.},\nbooktitle = {Proceedings of the 26th Text REtrieval Conference},\nshortbooktitle={TREC '17},\nlocation= {Washington, DC, USA},\nyear = {2017},\nmonth = {November},\nurl_Paper = {papers/trec_2017_draft.pdf},\nurl_Slides = {papers/trec_2017_slides.pdf},\n abstract={\"In this paper, we describe the system designed for the TREC\n2017 Precision Medicine track by the University of Texas\nat Dallas (UTD) Human Language Technology Research In-\nstitute (HLTRI). Our system incorporates an aspect-based\nretrieval paradigm wherein each of the four structured com-\nponents of the topic is cast as a separate aspect, along with\ntwo “hidden” aspects encoding the need that retrieved docu-\nments be within the domain of precision medicine and that\nretrieved documents have a focus on treatment. To this end,\nwe construct knowledge graph encoding the relationships be-\ntween drugs, genes, and mutations. Our experiments reveal\nthat the aspect-based approach leads to improved quality of\nretrieved scientific articles and clinical trials.\"},\nkeywords = {precision medicine, knowledge graph, information retrieval, question answering, medical informatics}\n}\n\n","author_short":["Goodwin, T. R.","Skinner, M. A.","Harabagiu, S. M."],"key":"goodwin2017utd","id":"goodwin2017utd","bibbaseid":"goodwin-skinner-harabagiu-utdhltriattrec2017precisionmedicinetrack-2017","role":"author","urls":{" paper":"http://www.hlt.utdallas.edu/~travis/papers/trec_2017_draft.pdf"," slides":"http://www.hlt.utdallas.edu/~travis/papers/trec_2017_slides.pdf"},"keyword":["precision medicine","knowledge graph","information retrieval","question answering","medical informatics"],"downloads":0,"html":""},"search_terms":["utd","hltri","trec","2017","precision","medicine","track","goodwin","skinner","harabagiu"],"keywords":["precision medicine","knowledge graph","information retrieval","question answering","medical informatics"],"authorIDs":["5a2f21809abaa8bf3500003f"],"dataSources":["ea3q84ZXjZvjBmaC4"]}