Recovering local structure information from high-pressure total scattering experiments. Herlihy, A., Geddes, H. S., Sosso, G. C., Bull, C. L., Ridley, C. J., Goodwin, A. L., Senn, M. S., & Funnell, N. P. Journal of Applied Crystallography, 54(6):1546–1554, December, 2021. Paper doi abstract bibtex High pressure is a powerful thermodynamic tool for exploring the structure and the phase behaviour of the crystalline state, and is now widely used in conventional crystallographic measurements. High-pressure local structure measurements using neutron diffraction have, thus far, been limited by the presence of a strongly scattering, perdeuterated, pressure-transmitting medium (PTM), the signal from which contaminates the resulting pair distribution functions (PDFs). Here, a method is reported for subtracting the pairwise correlations of the commonly used 4:1 methanol:ethanol PTM from neutron PDFs obtained under hydrostatic compression. The method applies a molecular-dynamics-informed empirical correction and a non-negative matrix factorization algorithm to recover the PDF of the pure sample. Proof of principle is demonstrated, producing corrected high-pressure PDFs of simple crystalline materials, Ni and MgO, and benchmarking these against simulated data from the average structure. Finally, the first local structure determination of α-quartz under hydrostatic pressure is presented, extracting compression behaviour of the real-space structure.
@article{herlihy_recovering_2021,
title = {Recovering local structure information from high-pressure total scattering experiments},
volume = {54},
issn = {1600-5767},
url = {https://scripts.iucr.org/cgi-bin/paper?S1600576721009420},
doi = {10.1107/S1600576721009420},
abstract = {High pressure is a powerful thermodynamic tool for exploring the structure and the phase behaviour of the crystalline state, and is now widely used in conventional crystallographic measurements. High-pressure local structure measurements using neutron diffraction have, thus far, been limited by the presence of a strongly scattering, perdeuterated, pressure-transmitting medium (PTM), the signal from which contaminates the resulting pair distribution functions (PDFs). Here, a method is reported for subtracting the pairwise correlations of the commonly used 4:1 methanol:ethanol PTM from neutron PDFs obtained under hydrostatic compression. The method applies a molecular-dynamics-informed empirical correction and a non-negative matrix factorization algorithm to recover the PDF of the pure sample. Proof of principle is demonstrated, producing corrected high-pressure PDFs of simple crystalline materials, Ni and MgO, and benchmarking these against simulated data from the average structure. Finally, the first local structure determination of α-quartz under hydrostatic pressure is presented, extracting compression behaviour of the real-space structure.},
language = {en},
number = {6},
urldate = {2022-01-05},
journal = {Journal of Applied Crystallography},
author = {Herlihy, Anna and Geddes, Harry S. and Sosso, Gabriele C. and Bull, Craig L. and Ridley, Christopher J. and Goodwin, Andrew L. and Senn, Mark S. and Funnell, Nicholas P.},
month = dec,
year = {2021},
pages = {1546--1554},
}
Downloads: 0
{"_id":"C4YzqMJXCQkAzWeQk","bibbaseid":"herlihy-geddes-sosso-bull-ridley-goodwin-senn-funnell-recoveringlocalstructureinformationfromhighpressuretotalscatteringexperiments-2021","author_short":["Herlihy, A.","Geddes, H. S.","Sosso, G. C.","Bull, C. L.","Ridley, C. J.","Goodwin, A. L.","Senn, M. S.","Funnell, N. P."],"bibdata":{"bibtype":"article","type":"article","title":"Recovering local structure information from high-pressure total scattering experiments","volume":"54","issn":"1600-5767","url":"https://scripts.iucr.org/cgi-bin/paper?S1600576721009420","doi":"10.1107/S1600576721009420","abstract":"High pressure is a powerful thermodynamic tool for exploring the structure and the phase behaviour of the crystalline state, and is now widely used in conventional crystallographic measurements. High-pressure local structure measurements using neutron diffraction have, thus far, been limited by the presence of a strongly scattering, perdeuterated, pressure-transmitting medium (PTM), the signal from which contaminates the resulting pair distribution functions (PDFs). Here, a method is reported for subtracting the pairwise correlations of the commonly used 4:1 methanol:ethanol PTM from neutron PDFs obtained under hydrostatic compression. The method applies a molecular-dynamics-informed empirical correction and a non-negative matrix factorization algorithm to recover the PDF of the pure sample. Proof of principle is demonstrated, producing corrected high-pressure PDFs of simple crystalline materials, Ni and MgO, and benchmarking these against simulated data from the average structure. Finally, the first local structure determination of α-quartz under hydrostatic pressure is presented, extracting compression behaviour of the real-space structure.","language":"en","number":"6","urldate":"2022-01-05","journal":"Journal of Applied Crystallography","author":[{"propositions":[],"lastnames":["Herlihy"],"firstnames":["Anna"],"suffixes":[]},{"propositions":[],"lastnames":["Geddes"],"firstnames":["Harry","S."],"suffixes":[]},{"propositions":[],"lastnames":["Sosso"],"firstnames":["Gabriele","C."],"suffixes":[]},{"propositions":[],"lastnames":["Bull"],"firstnames":["Craig","L."],"suffixes":[]},{"propositions":[],"lastnames":["Ridley"],"firstnames":["Christopher","J."],"suffixes":[]},{"propositions":[],"lastnames":["Goodwin"],"firstnames":["Andrew","L."],"suffixes":[]},{"propositions":[],"lastnames":["Senn"],"firstnames":["Mark","S."],"suffixes":[]},{"propositions":[],"lastnames":["Funnell"],"firstnames":["Nicholas","P."],"suffixes":[]}],"month":"December","year":"2021","pages":"1546–1554","bibtex":"@article{herlihy_recovering_2021,\n\ttitle = {Recovering local structure information from high-pressure total scattering experiments},\n\tvolume = {54},\n\tissn = {1600-5767},\n\turl = {https://scripts.iucr.org/cgi-bin/paper?S1600576721009420},\n\tdoi = {10.1107/S1600576721009420},\n\tabstract = {High pressure is a powerful thermodynamic tool for exploring the structure and the phase behaviour of the crystalline state, and is now widely used in conventional crystallographic measurements. High-pressure local structure measurements using neutron diffraction have, thus far, been limited by the presence of a strongly scattering, perdeuterated, pressure-transmitting medium (PTM), the signal from which contaminates the resulting pair distribution functions (PDFs). Here, a method is reported for subtracting the pairwise correlations of the commonly used 4:1 methanol:ethanol PTM from neutron PDFs obtained under hydrostatic compression. The method applies a molecular-dynamics-informed empirical correction and a non-negative matrix factorization algorithm to recover the PDF of the pure sample. Proof of principle is demonstrated, producing corrected high-pressure PDFs of simple crystalline materials, Ni and MgO, and benchmarking these against simulated data from the average structure. Finally, the first local structure determination of α-quartz under hydrostatic pressure is presented, extracting compression behaviour of the real-space structure.},\n\tlanguage = {en},\n\tnumber = {6},\n\turldate = {2022-01-05},\n\tjournal = {Journal of Applied Crystallography},\n\tauthor = {Herlihy, Anna and Geddes, Harry S. and Sosso, Gabriele C. and Bull, Craig L. and Ridley, Christopher J. and Goodwin, Andrew L. and Senn, Mark S. and Funnell, Nicholas P.},\n\tmonth = dec,\n\tyear = {2021},\n\tpages = {1546--1554},\n}\n\n","author_short":["Herlihy, A.","Geddes, H. S.","Sosso, G. C.","Bull, C. L.","Ridley, C. J.","Goodwin, A. L.","Senn, M. S.","Funnell, N. P."],"key":"herlihy_recovering_2021","id":"herlihy_recovering_2021","bibbaseid":"herlihy-geddes-sosso-bull-ridley-goodwin-senn-funnell-recoveringlocalstructureinformationfromhighpressuretotalscatteringexperiments-2021","role":"author","urls":{"Paper":"https://scripts.iucr.org/cgi-bin/paper?S1600576721009420"},"metadata":{"authorlinks":{}}},"bibtype":"article","biburl":"https://api.zotero.org/users/441788/collections/KAFEE4KN/items?key=RfAdjEiyg7kYFw665zCNcSoQ&format=bibtex&limit=100","dataSources":["5x4YgGnYqb2LqdTQ3"],"keywords":[],"search_terms":["recovering","local","structure","information","high","pressure","total","scattering","experiments","herlihy","geddes","sosso","bull","ridley","goodwin","senn","funnell"],"title":"Recovering local structure information from high-pressure total scattering experiments","year":2021}