Probabilistic graphical model representation in phylogenetics. Hohna, S., Heath, T. H, Boussau, B., Landis, M. J, Ronquist, F., & Huelsenbeck, J. P Systematic Biology, 63(5):753–771, 2014.
doi  bibtex   
@article{hohna_probabilistic_2014,
	title = {Probabilistic graphical model representation in phylogenetics},
	volume = {63},
	doi = {10.1093/sysbio/syu039},
	language = {English},
	number = {5},
	journal = {Systematic Biology},
	author = {Hohna, Sebastian and Heath, Tracy H and Boussau, Bastien and Landis, Michael J and Ronquist, Fredrik and Huelsenbeck, John P},
	year = {2014},
	pages = {753--771},
}

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