Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean. Kaneko, H., Blanc-Mathieu, R., Endo, H., Chaffron, S., Delmont, T. O., Gaia, M., Henry, N., Hernandez-Velazquez, R., Nguyen, C. H., Mamitsuka, H., Forterre, P., Jaillon, O., de Vargas, C., Sullivan, M. B., Suttle, C. A., Guidi, L., & Ogata, H. iScience, 24(1):102002, 2021. Kaneko, Hiroto Blanc-Mathieu, Romain Endo, Hisashi Chaffron, Samuel Delmont, Tom O Gaia, Morgan Henry, Nicolas Hernandez-Velazquez, Rodrigo Nguyen, Canh Hao Mamitsuka, Hiroshi Forterre, Patrick Jaillon, Olivier de Vargas, Colomban Sullivan, Matthew B Suttle, Curtis A Guidi, Lionel Ogata, Hiroyuki eng iScience. 2020 Dec 29;24(1):102002. doi: 10.1016/j.isci.2020.102002. eCollection 2021 Jan 22.
Paper doi abstract bibtex 4 downloads The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral "shunt" and "shuttle"). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.
@article{RN216,
author = {Kaneko, H. and Blanc-Mathieu, R. and Endo, H. and Chaffron, S. and Delmont, T. O. and Gaia, M. and Henry, N. and Hernandez-Velazquez, R. and Nguyen, C. H. and Mamitsuka, H. and Forterre, P. and Jaillon, O. and de Vargas, C. and Sullivan, M. B. and Suttle, C. A. and Guidi, L. and Ogata, H.},
title = {Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean},
journal = {iScience},
volume = {24},
number = {1},
pages = {102002},
note = {Kaneko, Hiroto
Blanc-Mathieu, Romain
Endo, Hisashi
Chaffron, Samuel
Delmont, Tom O
Gaia, Morgan
Henry, Nicolas
Hernandez-Velazquez, Rodrigo
Nguyen, Canh Hao
Mamitsuka, Hiroshi
Forterre, Patrick
Jaillon, Olivier
de Vargas, Colomban
Sullivan, Matthew B
Suttle, Curtis A
Guidi, Lionel
Ogata, Hiroyuki
eng
iScience. 2020 Dec 29;24(1):102002. doi: 10.1016/j.isci.2020.102002. eCollection 2021 Jan 22.},
abstract = {The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral "shunt" and "shuttle"). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.},
keywords = {Biogeoscience
Carbon Cycle
Global Carbon Cycle
Oceanography
Viral Microbiology
Virology},
ISSN = {2589-0042 (Electronic)
2589-0042 (Linking)},
DOI = {10.1016/j.isci.2020.102002},
url = {https://www.ncbi.nlm.nih.gov/pubmed/33490910},
year = {2021},
type = {Journal Article}
}
Downloads: 4
{"_id":"BrWnG4o92uTmrah5d","bibbaseid":"kaneko-blancmathieu-endo-chaffron-delmont-gaia-henry-hernandezvelazquez-etal-eukaryoticviruscompositioncanpredicttheefficiencyofcarbonexportintheglobalocean-2021","author_short":["Kaneko, H.","Blanc-Mathieu, R.","Endo, H.","Chaffron, S.","Delmont, T. O.","Gaia, M.","Henry, N.","Hernandez-Velazquez, R.","Nguyen, C. H.","Mamitsuka, H.","Forterre, P.","Jaillon, O.","de Vargas, C.","Sullivan, M. B.","Suttle, C. A.","Guidi, L.","Ogata, H."],"bibdata":{"bibtype":"article","type":"Journal Article","author":[{"propositions":[],"lastnames":["Kaneko"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Blanc-Mathieu"],"firstnames":["R."],"suffixes":[]},{"propositions":[],"lastnames":["Endo"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Chaffron"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Delmont"],"firstnames":["T.","O."],"suffixes":[]},{"propositions":[],"lastnames":["Gaia"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Henry"],"firstnames":["N."],"suffixes":[]},{"propositions":[],"lastnames":["Hernandez-Velazquez"],"firstnames":["R."],"suffixes":[]},{"propositions":[],"lastnames":["Nguyen"],"firstnames":["C.","H."],"suffixes":[]},{"propositions":[],"lastnames":["Mamitsuka"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Forterre"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Jaillon"],"firstnames":["O."],"suffixes":[]},{"propositions":["de"],"lastnames":["Vargas"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Sullivan"],"firstnames":["M.","B."],"suffixes":[]},{"propositions":[],"lastnames":["Suttle"],"firstnames":["C.","A."],"suffixes":[]},{"propositions":[],"lastnames":["Guidi"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["Ogata"],"firstnames":["H."],"suffixes":[]}],"title":"Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean","journal":"iScience","volume":"24","number":"1","pages":"102002","note":"Kaneko, Hiroto Blanc-Mathieu, Romain Endo, Hisashi Chaffron, Samuel Delmont, Tom O Gaia, Morgan Henry, Nicolas Hernandez-Velazquez, Rodrigo Nguyen, Canh Hao Mamitsuka, Hiroshi Forterre, Patrick Jaillon, Olivier de Vargas, Colomban Sullivan, Matthew B Suttle, Curtis A Guidi, Lionel Ogata, Hiroyuki eng iScience. 2020 Dec 29;24(1):102002. doi: 10.1016/j.isci.2020.102002. eCollection 2021 Jan 22.","abstract":"The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral \"shunt\" and \"shuttle\"). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.","keywords":"Biogeoscience Carbon Cycle Global Carbon Cycle Oceanography Viral Microbiology Virology","issn":"2589-0042 (Electronic) 2589-0042 (Linking)","doi":"10.1016/j.isci.2020.102002","url":"https://www.ncbi.nlm.nih.gov/pubmed/33490910","year":"2021","bibtex":"@article{RN216,\r\n author = {Kaneko, H. and Blanc-Mathieu, R. and Endo, H. and Chaffron, S. and Delmont, T. O. and Gaia, M. and Henry, N. and Hernandez-Velazquez, R. and Nguyen, C. H. and Mamitsuka, H. and Forterre, P. and Jaillon, O. and de Vargas, C. and Sullivan, M. B. and Suttle, C. A. and Guidi, L. and Ogata, H.},\r\n title = {Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean},\r\n journal = {iScience},\r\n volume = {24},\r\n number = {1},\r\n pages = {102002},\r\n note = {Kaneko, Hiroto\r\nBlanc-Mathieu, Romain\r\nEndo, Hisashi\r\nChaffron, Samuel\r\nDelmont, Tom O\r\nGaia, Morgan\r\nHenry, Nicolas\r\nHernandez-Velazquez, Rodrigo\r\nNguyen, Canh Hao\r\nMamitsuka, Hiroshi\r\nForterre, Patrick\r\nJaillon, Olivier\r\nde Vargas, Colomban\r\nSullivan, Matthew B\r\nSuttle, Curtis A\r\nGuidi, Lionel\r\nOgata, Hiroyuki\r\neng\r\niScience. 2020 Dec 29;24(1):102002. doi: 10.1016/j.isci.2020.102002. eCollection 2021 Jan 22.},\r\n abstract = {The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral \"shunt\" and \"shuttle\"). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.},\r\n keywords = {Biogeoscience\r\nCarbon Cycle\r\nGlobal Carbon Cycle\r\nOceanography\r\nViral Microbiology\r\nVirology},\r\n ISSN = {2589-0042 (Electronic)\r\n2589-0042 (Linking)},\r\n DOI = {10.1016/j.isci.2020.102002},\r\n url = {https://www.ncbi.nlm.nih.gov/pubmed/33490910},\r\n year = {2021},\r\n type = {Journal Article}\r\n}\r\n\r\n","author_short":["Kaneko, H.","Blanc-Mathieu, R.","Endo, H.","Chaffron, S.","Delmont, T. O.","Gaia, M.","Henry, N.","Hernandez-Velazquez, R.","Nguyen, C. H.","Mamitsuka, H.","Forterre, P.","Jaillon, O.","de Vargas, C.","Sullivan, M. B.","Suttle, C. A.","Guidi, L.","Ogata, H."],"key":"RN216","id":"RN216","bibbaseid":"kaneko-blancmathieu-endo-chaffron-delmont-gaia-henry-hernandezvelazquez-etal-eukaryoticviruscompositioncanpredicttheefficiencyofcarbonexportintheglobalocean-2021","role":"author","urls":{"Paper":"https://www.ncbi.nlm.nih.gov/pubmed/33490910"},"keyword":["Biogeoscience Carbon Cycle Global Carbon Cycle Oceanography Viral Microbiology Virology"],"metadata":{"authorlinks":{}},"downloads":4},"bibtype":"article","biburl":"https://bibbase.org/network/files/CzfdMm64N7sna2FRu","dataSources":["iYLLk93CYsonxaLrY","t7xPM8AA6iLF6Ckv9","jJ47DxiMR6MjLSFRc","9s8gPwvuScLx6XcJT","CG9K4BdddQWrftb7x","GXJLvS6cuRBu7DapG","oN8Wd4zAfgwaCR7pT","Ly5oTfXjg2ogJZ3Mt","WBzsMjaYZGMDcZMoy","vAJa6ptXSf5sWDNtC","TkaCSd5Aj84jXPcpB"],"keywords":["biogeoscience carbon cycle global carbon cycle oceanography viral microbiology virology"],"search_terms":["eukaryotic","virus","composition","predict","efficiency","carbon","export","global","ocean","kaneko","blanc-mathieu","endo","chaffron","delmont","gaia","henry","hernandez-velazquez","nguyen","mamitsuka","forterre","jaillon","de vargas","sullivan","suttle","guidi","ogata"],"title":"Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean","year":2021,"downloads":4}