@article{
 title = {The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.},
 type = {article},
 year = {2010},
 pages = {8},
 volume = {1},
 id = {bd4393d2-9c5c-3229-bdf8-2833362c9772},
 created = {2015-01-29T12:42:44.000Z},
 file_attached = {false},
 profile_id = {17c87d5d-2470-32d7-b273-0734a1d9195f},
 last_modified = {2017-03-22T07:45:59.566Z},
 read = {false},
 starred = {false},
 authored = {true},
 confirmed = {true},
 hidden = {false},
 citation_key = {Katayama2010},
 private_publication = {false},
 abstract = {Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS) and Computational Biology Research Center (CBRC) and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies.},
 bibtype = {article},
 author = {Katayama, Toshiaki and Arakawa, Kazuharu and Nakao, Mitsuteru and Ono, Keiichiro and Aoki-Kinoshita, Kiyoko F and Yamamoto, Yasunori and Yamaguchi, Atsuko and Kawashima, Shuichi and Chun, Hong-Woo and Aerts, Jan and Aranda, Bruno and Barboza, Lord Hendrix and Bonnal, Raoul Jp and Bruskiewich, Richard and Bryne, Jan C and Fernández, José M and Funahashi, Akira and Gordon, Paul Mk and Goto, Naohisa and Groscurth, Andreas and Gutteridge, Alex and Holland, Richard and Kano, Yoshinobu and Kawas, Edward A and Kerhornou, Arnaud and Kibukawa, Eri and Kinjo, Akira R and Kuhn, Michael and Lapp, Hilmar and Lehvaslaiho, Heikki and Nakamura, Hiroyuki and Nakamura, Yasukazu and Nishizawa, Tatsuya and Nobata, Chikashi and Noguchi, Tamotsu and Oinn, Thomas M and Okamoto, Shinobu and Owen, Stuart and Pafilis, Evangelos and Pocock, Matthew and Prins, Pjotr and Ranzinger, René and Reisinger, Florian and Salwinski, Lukasz and Schreiber, Mark and Senger, Martin and Shigemoto, Yasumasa and Standley, Daron M and Sugawara, Hideaki and Tashiro, Toshiyuki and Trelles, Oswaldo and Vos, Rutger A and Wilkinson, Mark D and York, William and Zmasek, Christian M and Asai, Kiyoshi and Takagi, Toshihisa},
 doi = {10.1186/2041-1480-1-8},
 journal = {Journal of biomedical semantics}
}

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