The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, César, Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, David A., Weaver, D., Collado-Vides, J., Paulsen, I., & Karp, P. D. Nucleic Acids Res, 45(D1):D543-D550, 2017.
abstract bibtex

EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New SmartTable tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.

@Article{keseler17ecocyc,
  author                 = {Keseler, Ingrid M. and Mackie, Amanda and Santos-Zavaleta, Alberto and Billington, Richard and Bonavides-Mart{\'i}nez, C{\'e}sar and Caspi, Ron and Fulcher, Carol and Gama-Castro, Socorro and Kothari, Anamika and Krummenacker, Markus and Latendresse, Mario and Mu{\~n}iz-Rascado, Luis and Ong, Quang and Paley, Suzanne and Peralta-Gil, Martin and Subhraveti, Pallavi and Vel{\'a}zquez-Ram{\'i}rez, David A. and Weaver, Daniel and Collado-Vides, Julio and Paulsen, Ian and Karp, Peter D.},
  title                  = {The {EcoCyc} database: reflecting new knowledge about Escherichia coli K-12.},
  journal                = {Nucleic Acids Res},
  year                   = {2017},
  volume                 = {45},
  pages                  = {D543-D550},
  optmonth                  = jan,
  abstract               = {EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New SmartTable tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.},
  article-doi            = {10.1093/nar/gkw1003},
  article-pii            = {gkw1003},
  completed              = {20170615},
  electronic-issn        = {1362-4962},
  electronic-publication = {20161129},
  history                = {2016/12/01 06:00 [entrez]},
  number                 = {D1},
  keywords               = {Computational Biology/*methods, *Databases, Genetic, Energy Metabolism, Escherichia coli K12/*genetics/*metabolism, Escherichia coli Proteins/genetics/metabolism, Gene Expression Regulation, Bacterial, Metabolic Networks and Pathways, Signal Transduction, Software, Transcription Factors/metabolism, Web Browser},
  location-id            = {10.1093/nar/gkw1003 [doi]},
  nlm-unique-id          = {0411011},
  owner                  = {NLM},
  print-issn             = {0305-1048},
  publication-status     = {ppublish},
  registry-number        = {0 (Transcription Factors)},
  revised                = {20181113},
  source                 = {Nucleic Acids Res. 2017 Jan 4;45(D1):D543-D550. doi: 10.1093/nar/gkw1003. Epub 2016 Nov 29.},
  status                 = {MEDLINE},
  subset                 = {IM},
  title-abbreviation     = {Nucleic Acids Res},
}

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