Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Liu, K., Raghavan, S., Nelesen, S., Linder, C R., & Warnow, T. Science, 324(5934):1561–1564, American Association for the Advancement of Science, 2009.
bibtex   
@Article{liu09rapid,
  author    = {Liu, Kevin and Raghavan, Sindhu and Nelesen, Serita and Linder, C Randal and Warnow, Tandy},
  title     = {Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees},
  journal   = {Science},
  year      = {2009},
  volume    = {324},
  number    = {5934},
  pages     = {1561--1564},
  publisher = {American Association for the Advancement of Science},
}

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