Enzyme Genetic Programming: Modelling Biological Evolvability in Genetic Programming. Lones, M. A. Ph.D. Thesis, The University of York, Heslington, York, YO10 5DD, UK, sep, 2003. Paper abstract bibtex 6 downloads This thesis introduces a new approach to program representation in genetic programming in which interactions between program components are expressed in terms of a component's behaviour rather through its relative position within a representation or through other non-behavioural systems of reference. This approach has the advantage that a component's behaviour is expressed in a way that is independent of any particular program it finds itself within; and thereby overcomes the problem when using conventional program representations whereby program components lose their behavioural context following recombination. More generally, this implicit context representation leads to a process of meaningful variation filtering; whereby inappropriate change induced by variation operators can be wholly or partially ignored. This occurs as a consequence of program behaviours emerging from the self-organisation of program components, ignoring those components which do not fit the contexts declared by the other components within the program. This process results in gradual change within the behaviour of a program during evolution. This thesis also presents results which show that implicit context representation leads to better size evolution characteristics than conventional genetic programming; and that functional redundancy and Lamarckian reinforcement learning both improve evolutionary search, agreeing with previous research by other authors.
@PhdThesis{lones2003thesis,
author = {Michael A. Lones},
title = {Enzyme Genetic Programming: Modelling Biological
Evolvability in Genetic Programming},
school = {The University of York},
year = {2003},
address = {Heslington, York, YO10 5DD, UK},
month = {sep},
keywords = {genetic algorithms, genetic programming, evolvability,
representation, self-organisation, biological
modelling},
URL = {http://www-users.york.ac.uk/~mal503/common/thesis/main.html},
size = {200 pages},
abstract = {This thesis introduces a new approach to program
representation in genetic programming in which
interactions between program components are expressed
in terms of a component's behaviour rather through its
relative position within a representation or through
other non-behavioural systems of reference. This
approach has the advantage that a component's behaviour
is expressed in a way that is independent of any
particular program it finds itself within; and thereby
overcomes the problem when using conventional program
representations whereby program components lose their
behavioural context following recombination. More
generally, this implicit context representation leads
to a process of meaningful variation filtering; whereby
inappropriate change induced by variation operators can
be wholly or partially ignored. This occurs as a
consequence of program behaviours emerging from the
self-organisation of program components, ignoring those
components which do not fit the contexts declared by
the other components within the program. This process
results in gradual change within the behaviour of a
program during evolution. This thesis also presents
results which show that implicit context representation
leads to better size evolution characteristics than
conventional genetic programming; and that functional
redundancy and Lamarckian reinforcement learning both
improve evolutionary search, agreeing with previous
research by other authors.},
}
Downloads: 6
{"_id":"5tSqLCN39DvLiz47v","bibbaseid":"lones-enzymegeneticprogrammingmodellingbiologicalevolvabilityingeneticprogramming-2003","downloads":6,"creationDate":"2017-05-22T14:30:01.356Z","title":"Enzyme Genetic Programming: Modelling Biological Evolvability in Genetic Programming","author_short":["Lones, M. A."],"year":2003,"bibtype":"phdthesis","biburl":"http://www.macs.hw.ac.uk/~ml355/common/bib/lonespubs.bib","bibdata":{"bibtype":"phdthesis","type":"phdthesis","author":[{"firstnames":["Michael","A."],"propositions":[],"lastnames":["Lones"],"suffixes":[]}],"title":"Enzyme Genetic Programming: Modelling Biological Evolvability in Genetic Programming","school":"The University of York","year":"2003","address":"Heslington, York, YO10 5DD, UK","month":"sep","keywords":"genetic algorithms, genetic programming, evolvability, representation, self-organisation, biological modelling","url":"http://www-users.york.ac.uk/~mal503/common/thesis/main.html","size":"200 pages","abstract":"This thesis introduces a new approach to program representation in genetic programming in which interactions between program components are expressed in terms of a component's behaviour rather through its relative position within a representation or through other non-behavioural systems of reference. This approach has the advantage that a component's behaviour is expressed in a way that is independent of any particular program it finds itself within; and thereby overcomes the problem when using conventional program representations whereby program components lose their behavioural context following recombination. More generally, this implicit context representation leads to a process of meaningful variation filtering; whereby inappropriate change induced by variation operators can be wholly or partially ignored. This occurs as a consequence of program behaviours emerging from the self-organisation of program components, ignoring those components which do not fit the contexts declared by the other components within the program. This process results in gradual change within the behaviour of a program during evolution. This thesis also presents results which show that implicit context representation leads to better size evolution characteristics than conventional genetic programming; and that functional redundancy and Lamarckian reinforcement learning both improve evolutionary search, agreeing with previous research by other authors.","bibtex":"@PhdThesis{lones2003thesis,\n author = {Michael A. Lones},\n title = {Enzyme Genetic Programming: Modelling Biological\n Evolvability in Genetic Programming},\n school = {The University of York},\n year = {2003},\n address = {Heslington, York, YO10 5DD, UK},\n month = {sep},\n keywords = {genetic algorithms, genetic programming, evolvability,\n representation, self-organisation, biological\n modelling},\n URL = {http://www-users.york.ac.uk/~mal503/common/thesis/main.html},\n size = {200 pages},\n abstract = {This thesis introduces a new approach to program\n representation in genetic programming in which\n interactions between program components are expressed\n in terms of a component's behaviour rather through its\n relative position within a representation or through\n other non-behavioural systems of reference. This\n approach has the advantage that a component's behaviour\n is expressed in a way that is independent of any\n particular program it finds itself within; and thereby\n overcomes the problem when using conventional program\n representations whereby program components lose their\n behavioural context following recombination. More\n generally, this implicit context representation leads\n to a process of meaningful variation filtering; whereby\n inappropriate change induced by variation operators can\n be wholly or partially ignored. This occurs as a\n consequence of program behaviours emerging from the\n self-organisation of program components, ignoring those\n components which do not fit the contexts declared by\n the other components within the program. This process\n results in gradual change within the behaviour of a\n program during evolution. This thesis also presents\n results which show that implicit context representation\n leads to better size evolution characteristics than\n conventional genetic programming; and that functional\n redundancy and Lamarckian reinforcement learning both\n improve evolutionary search, agreeing with previous\n research by other authors.},\n}\n\n","author_short":["Lones, M. A."],"key":"lones2003thesis","id":"lones2003thesis","bibbaseid":"lones-enzymegeneticprogrammingmodellingbiologicalevolvabilityingeneticprogramming-2003","role":"author","urls":{"Paper":"http://www-users.york.ac.uk/~mal503/common/thesis/main.html"},"keyword":["genetic algorithms","genetic programming","evolvability","representation","self-organisation","biological modelling"],"metadata":{"authorlinks":{"lones, m":"https://www.macs.hw.ac.uk/~ml355/publications.html"}},"downloads":6,"html":""},"search_terms":["enzyme","genetic","programming","modelling","biological","evolvability","genetic","programming","lones"],"keywords":["genetic algorithms","genetic programming","evolvability","representation","self-organisation","biological modelling"],"authorIDs":["phchpQ2wRTTjgcrSM"],"dataSources":["sEoNKzT5Zosn9FtpE"]}