Probing the Limits to MicroRNA-Mediated Control of Gene Expression. Martirosyan, A., Figliuzzi, M., Marinari, E., & De Martino, A. PLoS Computational Biology, Public Library of Science, 2016. cited By 19Paper doi abstract bibtex According to the ‘ceRNA hypothesis’, microRNAs (miRNAs) may act as mediators of an effective positive interaction between long coding or non-coding RNA molecules, carrying significant potential implications for a variety of biological processes. Here, inspired by recent work providing a quantitative description of small regulatory elements as information-conveying channels, we characterize the effectiveness of miRNA-mediated regulation in terms of the optimal information flow achievable between modulator (transcription factors) and target nodes (long RNAs). Our findings show that, while a sufficiently large degree of target derepression is needed to activate miRNA-mediated transmission, (a) in case of differential mechanisms of complex processing and/or transcriptional capabilities, regulation by a post-transcriptional miRNA-channel can outperform that achieved through direct transcriptional control; moreover, (b) in the presence of large populations of weakly interacting miRNA molecules the extra noise coming from titration disappears, allowing the miRNA-channel to process information as effectively as the direct channel. These observations establish the limits of miRNA-mediated post-transcriptional cross-talk and suggest that, besides providing a degree of noise buffering, this type of control may be effectively employed in cells both as a failsafe mechanism and as a preferential fine tuner of gene expression, pointing to the specific situations in which each of these functionalities is maximized. © 2016 Martirosyan et al.
@ARTICLE{Martirosyan2016,
author={Martirosyan, A. and Figliuzzi, M. and Marinari, E. and De Martino, A.},
title={Probing the Limits to MicroRNA-Mediated Control of Gene Expression},
journal={PLoS Computational Biology},
year={2016},
volume={12},
number={1},
page_count={23},
doi={10.1371/journal.pcbi.1004715},
art_number={e1004715},
note={cited By 19},
url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84956818622&doi=10.1371%2fjournal.pcbi.1004715&partnerID=40&md5=14b7d14e4761776941bb29260bac713b},
abstract={According to the ‘ceRNA hypothesis’, microRNAs (miRNAs) may act as mediators of an effective positive interaction between long coding or non-coding RNA molecules, carrying significant potential implications for a variety of biological processes. Here, inspired by recent work providing a quantitative description of small regulatory elements as information-conveying channels, we characterize the effectiveness of miRNA-mediated regulation in terms of the optimal information flow achievable between modulator (transcription factors) and target nodes (long RNAs). Our findings show that, while a sufficiently large degree of target derepression is needed to activate miRNA-mediated transmission, (a) in case of differential mechanisms of complex processing and/or transcriptional capabilities, regulation by a post-transcriptional miRNA-channel can outperform that achieved through direct transcriptional control; moreover, (b) in the presence of large populations of weakly interacting miRNA molecules the extra noise coming from titration disappears, allowing the miRNA-channel to process information as effectively as the direct channel. These observations establish the limits of miRNA-mediated post-transcriptional cross-talk and suggest that, besides providing a degree of noise buffering, this type of control may be effectively employed in cells both as a failsafe mechanism and as a preferential fine tuner of gene expression, pointing to the specific situations in which each of these functionalities is maximized. © 2016 Martirosyan et al.},
publisher={Public Library of Science},
issn={1553734X},
pubmed_id={26812364},
document_type={Article},
source={Scopus},
}
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