Hydrophobic Gating of Ion Permeation in Magnesium Channel CorA. Neale, C., Chakrabarti, N., Pomorski, P., Pai, E., F., & Pomès, R. PLOS Computational Biology, 11(7):e1004303, 2015. Paper Website doi abstract bibtex Ion channels catalyze ionic permeation across membranes via water-filled pores. To under- stand how changes in intracellular magnesium concentration regulate the influx of Mg2+ into cells, we examine early events in the relaxation of Mg2+ channel CorA toward its open state using massively-repeated molecular dynamics simulations conducted either with or without regulatory ions. The pore of CorA contains a 2-nm-long hydrophobic bottleneck which remained dehydrated in most simulations. However, rapid hydration or “wetting” events con- current with small-amplitude fluctuations in pore diameter occurred spontaneously and reversibly. In the absence of regulatory ions, wetting transitions are more likely and include a wet state that is significantly more stable and more hydrated. The free energy profile for Mg2+ permeation presents a barrier whose magnitude is anticorrelated to pore diameter and the extent of hydrophobic hydration. These findings support an allosteric mechanism whereby wetting of a hydrophobic gate couples changes in intracellular magnesium con- centration to the onset of ionic conduction.
@article{
title = {Hydrophobic Gating of Ion Permeation in Magnesium Channel CorA},
type = {article},
year = {2015},
pages = {e1004303},
volume = {11},
websites = {http://dx.plos.org/10.1371/journal.pcbi.1004303},
id = {fea599c6-1ad5-3de1-962c-e204f8887328},
created = {2015-07-16T19:45:10.000Z},
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last_modified = {2017-03-28T17:10:06.277Z},
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abstract = {Ion channels catalyze ionic permeation across membranes via water-filled pores. To under- stand how changes in intracellular magnesium concentration regulate the influx of Mg2+ into cells, we examine early events in the relaxation of Mg2+ channel CorA toward its open state using massively-repeated molecular dynamics simulations conducted either with or without regulatory ions. The pore of CorA contains a 2-nm-long hydrophobic bottleneck which remained dehydrated in most simulations. However, rapid hydration or “wetting” events con- current with small-amplitude fluctuations in pore diameter occurred spontaneously and reversibly. In the absence of regulatory ions, wetting transitions are more likely and include a wet state that is significantly more stable and more hydrated. The free energy profile for Mg2+ permeation presents a barrier whose magnitude is anticorrelated to pore diameter and the extent of hydrophobic hydration. These findings support an allosteric mechanism whereby wetting of a hydrophobic gate couples changes in intracellular magnesium con- centration to the onset of ionic conduction.},
bibtype = {article},
author = {Neale, Chris and Chakrabarti, Nilmadhab and Pomorski, Pawel and Pai, Emil F. and Pomès, Régis},
doi = {10.1371/journal.pcbi.1004303},
journal = {PLOS Computational Biology},
number = {7}
}
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