@Article{paulsen2005,
   Author="Paulsen, I. T.  and Press, C. M.  and Ravel, J.  and Kobayashi, D. Y.  and Myers, G. S.  and Mavrodi, D. V.  and DeBoy, R. T.  and Seshadri, R.  and Ren, Q.  and Madupu, R.  and Dodson, R. J.  and Durkin, A. S.  and Brinkac, L. M.  and Daugherty, S. C.  and Sullivan, S. A.  and Rosovitz, M. J.  and Gwinn, M. L.  and Zhou, L.  and Schneider, D. J.  and Cartinhour, S. W.  and Nelson, W. C.  and Weidman, J.  and Watkins, K.  and Tran, K.  and Khouri, H.  and Pierson, E. A.  and Pierson, L. S.  and Thomashow, L. S.  and Loper, J. E. ",
   Title="{{C}omplete genome sequence of the plant commensal {P}seudomonas fluorescens {P}f-5}",
   Journal="Nat Biotechnol",
   Year="2005",
   Volume="23",
   Number="7",
   Pages="873--878",
   Month="7",
   Abstract={Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant pathogens. The complete sequence of the 7.1-Mb Pf-5 genome was determined. We analyzed repeat sequences to identify genomic islands that, together with other approaches, suggested P. fluorescens Pf-5's recent lateral acquisitions include six secondary metabolite gene clusters, seven phage regions and a mobile genomic island. We identified various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens. In addition to six known secondary metabolites produced by P. fluorescens Pf-5, three novel secondary metabolite biosynthesis gene clusters were also identified that may contribute to the biocontrol properties of P. fluorescens Pf-5.},
   Note={[PubMed Central:\href{https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7416659}{PMC7416659}] [DOI:\href{https://dx.doi.org/10.1038/nbt1110}{10.1038/nbt1110}] [PubMed:\href{https://www.ncbi.nlm.nih.gov/pubmed/18945079}{18945079}] }
}

{"_id":"CHADFnX7ZEZpao7sG","bibbaseid":"paulsen-press-ravel-kobayashi-myers-mavrodi-deboy-seshadri-etal-completegenomesequenceoftheplantcommensalpseudomonasfluorescenspf5-2005","author_short":["Paulsen, I. T.","Press, C. M.","Ravel, J.","Kobayashi, D. Y.","Myers, G. S.","Mavrodi, D. V.","DeBoy, R. T.","Seshadri, R.","Ren, Q.","Madupu, R.","Dodson, R. J.","Durkin, A. S.","Brinkac, L. M.","Daugherty, S. C.","Sullivan, S. A.","Rosovitz, M. J.","Gwinn, M. L.","Zhou, L.","Schneider, D. J.","Cartinhour, S. W.","Nelson, W. C.","Weidman, J.","Watkins, K.","Tran, K.","Khouri, H.","Pierson, E. A.","Pierson, L. S.","Thomashow, L. S.","Loper, J. E."],"bibdata":{"bibtype":"article","type":"article","author":[{"propositions":[],"lastnames":["Paulsen"],"firstnames":["I.","T."],"suffixes":[]},{"propositions":[],"lastnames":["Press"],"firstnames":["C.","M."],"suffixes":[]},{"propositions":[],"lastnames":["Ravel"],"firstnames":["J."],"suffixes":[]},{"propositions":[],"lastnames":["Kobayashi"],"firstnames":["D.","Y."],"suffixes":[]},{"propositions":[],"lastnames":["Myers"],"firstnames":["G.","S."],"suffixes":[]},{"propositions":[],"lastnames":["Mavrodi"],"firstnames":["D.","V."],"suffixes":[]},{"propositions":[],"lastnames":["DeBoy"],"firstnames":["R.","T."],"suffixes":[]},{"propositions":[],"lastnames":["Seshadri"],"firstnames":["R."],"suffixes":[]},{"propositions":[],"lastnames":["Ren"],"firstnames":["Q."],"suffixes":[]},{"propositions":[],"lastnames":["Madupu"],"firstnames":["R."],"suffixes":[]},{"propositions":[],"lastnames":["Dodson"],"firstnames":["R.","J."],"suffixes":[]},{"propositions":[],"lastnames":["Durkin"],"firstnames":["A.","S."],"suffixes":[]},{"propositions":[],"lastnames":["Brinkac"],"firstnames":["L.","M."],"suffixes":[]},{"propositions":[],"lastnames":["Daugherty"],"firstnames":["S.","C."],"suffixes":[]},{"propositions":[],"lastnames":["Sullivan"],"firstnames":["S.","A."],"suffixes":[]},{"propositions":[],"lastnames":["Rosovitz"],"firstnames":["M.","J."],"suffixes":[]},{"propositions":[],"lastnames":["Gwinn"],"firstnames":["M.","L."],"suffixes":[]},{"propositions":[],"lastnames":["Zhou"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["Schneider"],"firstnames":["D.","J."],"suffixes":[]},{"propositions":[],"lastnames":["Cartinhour"],"firstnames":["S.","W."],"suffixes":[]},{"propositions":[],"lastnames":["Nelson"],"firstnames":["W.","C."],"suffixes":[]},{"propositions":[],"lastnames":["Weidman"],"firstnames":["J."],"suffixes":[]},{"propositions":[],"lastnames":["Watkins"],"firstnames":["K."],"suffixes":[]},{"propositions":[],"lastnames":["Tran"],"firstnames":["K."],"suffixes":[]},{"propositions":[],"lastnames":["Khouri"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Pierson"],"firstnames":["E.","A."],"suffixes":[]},{"propositions":[],"lastnames":["Pierson"],"firstnames":["L.","S."],"suffixes":[]},{"propositions":[],"lastnames":["Thomashow"],"firstnames":["L.","S."],"suffixes":[]},{"propositions":[],"lastnames":["Loper"],"firstnames":["J.","E."],"suffixes":[]}],"title":"Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5","journal":"Nat Biotechnol","year":"2005","volume":"23","number":"7","pages":"873–878","month":"7","abstract":"Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant pathogens. The complete sequence of the 7.1-Mb Pf-5 genome was determined. We analyzed repeat sequences to identify genomic islands that, together with other approaches, suggested P. fluorescens Pf-5's recent lateral acquisitions include six secondary metabolite gene clusters, seven phage regions and a mobile genomic island. We identified various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens. In addition to six known secondary metabolites produced by P. fluorescens Pf-5, three novel secondary metabolite biosynthesis gene clusters were also identified that may contribute to the biocontrol properties of P. fluorescens Pf-5.","note":"[PubMed Central:\\hrefhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7416659PMC7416659] [DOI:\\hrefhttps://dx.doi.org/10.1038/nbt111010.1038/nbt1110] [PubMed:\\hrefhttps://www.ncbi.nlm.nih.gov/pubmed/1894507918945079] ","bibtex":"@Article{paulsen2005,\n Author=\"Paulsen, I. T. and Press, C. M. and Ravel, J. and Kobayashi, D. Y. and Myers, G. S. and Mavrodi, D. V. and DeBoy, R. T. and Seshadri, R. and Ren, Q. and Madupu, R. and Dodson, R. J. and Durkin, A. S. and Brinkac, L. M. and Daugherty, S. C. and Sullivan, S. A. and Rosovitz, M. J. and Gwinn, M. L. and Zhou, L. and Schneider, D. J. and Cartinhour, S. W. and Nelson, W. C. and Weidman, J. and Watkins, K. and Tran, K. and Khouri, H. and Pierson, E. A. and Pierson, L. S. and Thomashow, L. S. and Loper, J. E. \",\n Title=\"{{C}omplete genome sequence of the plant commensal {P}seudomonas fluorescens {P}f-5}\",\n Journal=\"Nat Biotechnol\",\n Year=\"2005\",\n Volume=\"23\",\n Number=\"7\",\n Pages=\"873--878\",\n Month=\"7\",\n Abstract={Pseudomonas fluorescens Pf-5 is a plant commensal bacterium that inhabits the rhizosphere and produces secondary metabolites that suppress soilborne plant pathogens. The complete sequence of the 7.1-Mb Pf-5 genome was determined. We analyzed repeat sequences to identify genomic islands that, together with other approaches, suggested P. fluorescens Pf-5's recent lateral acquisitions include six secondary metabolite gene clusters, seven phage regions and a mobile genomic island. We identified various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens. In addition to six known secondary metabolites produced by P. fluorescens Pf-5, three novel secondary metabolite biosynthesis gene clusters were also identified that may contribute to the biocontrol properties of P. fluorescens Pf-5.},\n Note={[PubMed Central:\\href{https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7416659}{PMC7416659}] [DOI:\\href{https://dx.doi.org/10.1038/nbt1110}{10.1038/nbt1110}] [PubMed:\\href{https://www.ncbi.nlm.nih.gov/pubmed/18945079}{18945079}] }\n}\n\n","author_short":["Paulsen, I. T.","Press, C. M.","Ravel, J.","Kobayashi, D. Y.","Myers, G. S.","Mavrodi, D. V.","DeBoy, R. T.","Seshadri, R.","Ren, Q.","Madupu, R.","Dodson, R. J.","Durkin, A. S.","Brinkac, L. M.","Daugherty, S. C.","Sullivan, S. A.","Rosovitz, M. J.","Gwinn, M. L.","Zhou, L.","Schneider, D. J.","Cartinhour, S. W.","Nelson, W. C.","Weidman, J.","Watkins, K.","Tran, K.","Khouri, H.","Pierson, E. A.","Pierson, L. S.","Thomashow, L. S.","Loper, J. E."],"key":"paulsen2005","id":"paulsen2005","bibbaseid":"paulsen-press-ravel-kobayashi-myers-mavrodi-deboy-seshadri-etal-completegenomesequenceoftheplantcommensalpseudomonasfluorescenspf5-2005","role":"author","urls":{},"metadata":{"authorlinks":{}},"html":""},"bibtype":"article","biburl":"https://bibbase.org/network/files/7omCQCMxvjPCQZfjb","dataSources":["4EGaEr5EKz54T8jGa"],"keywords":[],"search_terms":["complete","genome","sequence","plant","commensal","pseudomonas","fluorescens","paulsen","press","ravel","kobayashi","myers","mavrodi","deboy","seshadri","ren","madupu","dodson","durkin","brinkac","daugherty","sullivan","rosovitz","gwinn","zhou","schneider","cartinhour","nelson","weidman","watkins","tran","khouri","pierson","pierson","thomashow","loper"],"title":"Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5","year":2005}