Variation partitioning of species data matrices: estimation and comparison of fractions. Peres-Neto, P., R., Legendre, P., Dray, S., & Borcard, D. Ecology, 87:2614-2625, 2006.
abstract   bibtex   
Establishing relationships between species distributions and environmental characteristics is a major goal in the search for forces driving species distributions. Canonical ordinations such as redundancy analysis and canonical correspondence analysis are invaluable tools for modeling communities through environmental predictors. They provide the means for conducting direct explanatory analysis in which the association among species can be studied according to their common and unique relationships with the environmental variables and other sets of predictors of interest, such as spatial variables. Variation partitioning can then be used to test and determine the likelihood of these sets of predictors in explaining patterns in community structure. Although variation partitioning in canonical analysis is routinely used in ecological analysis, no effort has been reported in the literature to consider appropriate estimators so that comparisons between fractions or, eventually, between different canonical models are meaningful. In this paper, we show that variation partitioning as currently applied in canonical analysis is biased. We present appropriate unbiased estimators. In addition, we outline a statistical test to compare fractions in canonical analysis. The question addressed by the test is whether two fractions of variation are significantly different from each other. Such assessment provides an important step toward attaining an understanding of the factors patterning community structure. The test is shown to have correct Type I error rates and good power for both redundancy analysis and canonical correspondence analysis.
@article{
 title = {Variation partitioning of species data matrices: estimation and comparison of fractions},
 type = {article},
 year = {2006},
 pages = {2614-2625},
 volume = {87},
 id = {373d2091-fa38-37c5-84c1-4278db5f52b0},
 created = {2010-11-03T21:13:25.000Z},
 file_attached = {true},
 profile_id = {976aa121-3316-304c-8340-7ca54d70abe6},
 last_modified = {2017-03-16T14:38:37.564Z},
 read = {true},
 starred = {false},
 authored = {true},
 confirmed = {true},
 hidden = {false},
 citation_key = {Peres-Neto2006a},
 source_type = {article},
 folder_uuids = {7e415411-ab1b-4ef7-9523-01b20e85991d},
 private_publication = {false},
 abstract = {Establishing relationships between species distributions and environmental
characteristics is a major goal in the search for forces driving
species distributions. Canonical ordinations such as redundancy analysis
and canonical correspondence analysis are invaluable tools for modeling
communities through environmental predictors. They provide the means
for conducting direct explanatory analysis in which the association
among species can be studied according to their common and unique
relationships with the environmental variables and other sets of
predictors of interest, such as spatial variables. Variation partitioning
can then be used to test and determine the likelihood of these sets
of predictors in explaining patterns in community structure. Although
variation partitioning in canonical analysis is routinely used in
ecological analysis, no effort has been reported in the literature
to consider appropriate estimators so that comparisons between fractions
or, eventually, between different canonical models are meaningful.
In this paper, we show that variation partitioning as currently applied
in canonical analysis is biased. We present appropriate unbiased
estimators. In addition, we outline a statistical test to compare
fractions in canonical analysis. The question addressed by the test
is whether two fractions of variation are significantly different
from each other. Such assessment provides an important step toward
attaining an understanding of the factors patterning community structure.
The test is shown to have correct Type I error rates and good power
for both redundancy analysis and canonical correspondence analysis.},
 bibtype = {article},
 author = {Peres-Neto, P R and Legendre, P and Dray, Stéphane and Borcard, D},
 journal = {Ecology},
 keywords = {R2}
}

Downloads: 0